ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 464, 821 |
| AclWI | GGATC | 1 cut(s) | 397 |
| AcsI | RAATTY | 1 cut(s) | 1082 |
| AcuI | CTGAAG | 1 cut(s) | 392 |
| AfaI | GTAC | 3 cut(s) | 141, 860, 967 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 46, 57, 638, 874, 897 |
| AgsI | TTSAA | 7 cut(s) | 91, 260, 412, 461, 709, 908, 1037 |
| AluBI | AGCT | 3 cut(s) | 683, 737, 1029 |
| AluI | AGCT | 3 cut(s) | 683, 737, 1029 |
| Alw21I | GWGCWC | 1 cut(s) | 113 |
| Alw44I | GTGCAC | 1 cut(s) | 109 |
| AlwI | GGATC | 1 cut(s) | 397 |
| AoxI | GGCC | 4 cut(s) | 48, 348, 742, 865 |
| ApaLI | GTGCAC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 1 cut(s) | 592 |
| ApoI | RAATTY | 1 cut(s) | 1082 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 716 |
| AspA2I | CCTAGG | 1 cut(s) | 862 |
| AspS9I | GGNCC | 2 cut(s) | 349, 742 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 541 |
| AvrII | CCTAGG | 1 cut(s) | 862 |
| BaeGI | GKGCMC | 1 cut(s) | 113 |
| BbsI | GAAGAC | 2 cut(s) | 328, 929 |
| Bbv12I | GWGCWC | 1 cut(s) | 113 |
| BbvI | GCAGC | 1 cut(s) | 604 |
| BccI | CCATC | 1 cut(s) | 586 |
| BclI | TGATCA | 1 cut(s) | 987 |
| BfaI | CTAG | 3 cut(s) | 180, 582, 863 |
| BisI | GCNGC | 1 cut(s) | 593 |
| BlnI | CCTAGG | 1 cut(s) | 862 |
| BlsI | GCNGC | 1 cut(s) | 594 |
| BmgT120I | GGNCC | 2 cut(s) | 349, 742 |
| BpiI | GAAGAC | 2 cut(s) | 328, 929 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| Bpu10I | CCTNAGC | 1 cut(s) | 500 |
| BpuEI | CTTGAG | 1 cut(s) | 374 |
| BsaJI | CCNNGG | 2 cut(s) | 494, 862 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 46, 57, 638, 874, 897 |
| Bse1I | ACTGG | 2 cut(s) | 51, 215 |
| BseDI | CCNNGG | 2 cut(s) | 494, 862 |
| BseGI | GGATG | 1 cut(s) | 271 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 46, 57, 638, 874, 897 |
| BseMII | CTCAG | 3 cut(s) | 44, 514, 953 |
| BseNI | ACTGG | 2 cut(s) | 51, 215 |
| BseRI | GAGGAG | 1 cut(s) | 131 |
| BseSI | GKGCMC | 1 cut(s) | 113 |
| BseXI | GCAGC | 1 cut(s) | 604 |
| BshFI | GGCC | 4 cut(s) | 50, 350, 744, 867 |
| BsiHKAI | GWGCWC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 46, 57, 638, 874, 897 |
| BsmI | GAATGC | 1 cut(s) | 308 |
| BsnI | GGCC | 4 cut(s) | 50, 350, 744, 867 |
| Bsp1286I | GDGCHC | 1 cut(s) | 113 |
| Bsp143I | GATC | 3 cut(s) | 75, 389, 987 |
| Bsp19I | CCATGG | 1 cut(s) | 494 |
| BspACI | CCGC | 2 cut(s) | 464, 821 |
| BspANI | GGCC | 4 cut(s) | 50, 350, 744, 867 |
| BspCNI | CTCAG | 4 cut(s) | 4, 43, 513, 954 |
| BspPI | GGATC | 1 cut(s) | 397 |
| BspQI | GCTCTTC | 1 cut(s) | 582 |
| BsrI | ACTGG | 2 cut(s) | 51, 215 |
| BssECI | CCNNGG | 2 cut(s) | 494, 862 |
| BssMI | GATC | 3 cut(s) | 75, 389, 987 |
| BssT1I | CCWWGG | 2 cut(s) | 494, 862 |
| Bst4CI | ACNGT | 2 cut(s) | 529, 573 |
| Bst6I | CTCTTC | 3 cut(s) | 255, 582, 804 |
| BstDEI | CTNAG | 6 cut(s) | 12, 30, 500, 560, 783, 962 |
| BstDSI | CCRYGG | 1 cut(s) | 494 |
| BstF5I | GGATG | 1 cut(s) | 271 |
| BstKTI | GATC | 3 cut(s) | 78, 392, 990 |
| BstMBI | GATC | 3 cut(s) | 75, 389, 987 |
| BstSLI | GKGCMC | 1 cut(s) | 113 |
| BstV1I | GCAGC | 1 cut(s) | 604 |
| BstV2I | GAAGAC | 2 cut(s) | 328, 929 |
| BsuRI | GGCC | 4 cut(s) | 50, 350, 744, 867 |
| BtgI | CCRYGG | 1 cut(s) | 494 |
| BtsCI | GGATG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 2 cut(s) | 1014, 1076 |
| Cfr13I | GGNCC | 2 cut(s) | 349, 742 |
| CseI | GACGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 3 cut(s) | 140, 859, 966 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 79, 114 |
| CviAII | CATG | 7 cut(s) | 281, 421, 478, 495, 605, 851, 1075 |
| CviQI | GTAC | 3 cut(s) | 140, 859, 966 |
| DdeI | CTNAG | 6 cut(s) | 12, 30, 500, 560, 783, 962 |
| DpnI | GATC | 3 cut(s) | 77, 391, 989 |
| DpnII | GATC | 3 cut(s) | 75, 389, 987 |
| Eam1104I | CTCTTC | 3 cut(s) | 255, 582, 804 |
| EarI | CTCTTC | 3 cut(s) | 255, 582, 804 |
| Eco130I | CCWWGG | 2 cut(s) | 494, 862 |
| Eco147I | AGGCCT | 1 cut(s) | 867 |
| Eco32I | GATATC | 2 cut(s) | 286, 360 |
| Eco57I | CTGAAG | 1 cut(s) | 392 |
| EcoRI | GAATTC | 1 cut(s) | 1082 |
| EcoRV | GATATC | 2 cut(s) | 286, 360 |
| EcoT14I | CCWWGG | 2 cut(s) | 494, 862 |
| ErhI | CCWWGG | 2 cut(s) | 494, 862 |
| FaeI | CATG | 7 cut(s) | 284, 424, 481, 498, 608, 854, 1078 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 701, 733 |
| FatI | CATG | 7 cut(s) | 280, 420, 477, 494, 604, 850, 1074 |
| FauNDI | CATATG | 1 cut(s) | 433 |
| FbaI | TGATCA | 1 cut(s) | 987 |
| Fnu4HI | GCNGC | 1 cut(s) | 593 |
| FokI | GGATG | 1 cut(s) | 278 |
| Fsp4HI | GCNGC | 1 cut(s) | 593 |
| FspBI | CTAG | 3 cut(s) | 180, 582, 863 |
| GluI | GCNGC | 1 cut(s) | 593 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| HaeIII | GGCC | 4 cut(s) | 50, 350, 744, 867 |
| HgaI | GACGC | 1 cut(s) | 365 |
| Hin1II | CATG | 7 cut(s) | 284, 424, 481, 498, 608, 854, 1078 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HindIII | AAGCTT | 1 cut(s) | 735 |
| HinfI | GANTC | 2 cut(s) | 119, 662 |
| HphI | GGTGA | 2 cut(s) | 167, 541 |
| Hpy166II | GTNNAC | 6 cut(s) | 19, 111, 165, 198, 754, 844 |
| Hpy188I | TCNGA | 1 cut(s) | 124 |
| Hpy188III | TCNNGA | 4 cut(s) | 370, 582, 797, 1058 |
| Hpy8I | GTNNAC | 6 cut(s) | 19, 111, 165, 198, 754, 844 |
| Hpy99I | CGWCG | 1 cut(s) | 381 |
| HpyAV | CCTTC | 2 cut(s) | 787, 878 |
| HpyCH4III | ACNGT | 2 cut(s) | 529, 573 |
| HpyCH4V | TGCA | 7 cut(s) | 111, 280, 308, 656, 771, 917, 1074 |
| HpyF3I | CTNAG | 6 cut(s) | 12, 30, 500, 560, 783, 962 |
| Hsp92II | CATG | 7 cut(s) | 284, 424, 481, 498, 608, 854, 1078 |
| Ksp22I | TGATCA | 1 cut(s) | 987 |
| Kzo9I | GATC | 3 cut(s) | 75, 389, 987 |
| LguI | GCTCTTC | 1 cut(s) | 582 |
| LpnPI | CCDG | 9 cut(s) | 43, 64, 228, 383, 487, 734, 882, 1043, 1072 |
| Lsp1109I | GCAGC | 1 cut(s) | 604 |
| MaeI | CTAG | 3 cut(s) | 180, 582, 863 |
| MaeIII | GTNAC | 2 cut(s) | 53, 220 |
| MalI | GATC | 3 cut(s) | 77, 391, 989 |
| MboI | GATC | 3 cut(s) | 75, 389, 987 |
| MboII | GAAGA | 8 cut(s) | 78, 272, 333, 599, 709, 721, 821, 934 |
| MhlI | GDGCHC | 1 cut(s) | 113 |
| MluCI | AATT | 7 cut(s) | 135, 191, 246, 703, 908, 1037, 1082 |
| MlyI | GAGTC | 1 cut(s) | 128 |
| MmeI | TCCRAC | 1 cut(s) | 896 |
| MnlI | CCTC | 9 cut(s) | 7, 109, 222, 256, 380, 557, 642, 685, 724 |
| MroXI | GAANNNNTTC | 1 cut(s) | 716 |
| MseI | TTAA | 3 cut(s) | 249, 417, 674 |
| Mva1269I | GAATGC | 1 cut(s) | 308 |
| NcoI | CCATGG | 1 cut(s) | 494 |
| NdeI | CATATG | 1 cut(s) | 433 |
| NdeII | GATC | 3 cut(s) | 75, 389, 987 |
| NlaIII | CATG | 7 cut(s) | 284, 424, 481, 498, 608, 854, 1078 |
| NmeAIII | GCCGAG | 1 cut(s) | 342 |
| PceI | AGGCCT | 1 cut(s) | 867 |
| PciSI | GCTCTTC | 1 cut(s) | 582 |
| PctI | GAATGC | 1 cut(s) | 308 |
| PdmI | GAANNNNTTC | 1 cut(s) | 716 |
| PfeI | GAWTC | 1 cut(s) | 662 |
| PkrI | GCNGC | 1 cut(s) | 594 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| PspPI | GGNCC | 2 cut(s) | 349, 742 |
| RsaI | GTAC | 3 cut(s) | 141, 860, 967 |
| RsaNI | GTAC | 3 cut(s) | 140, 859, 966 |
| SapI | GCTCTTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 3 cut(s) | 249, 417, 674 |
| SatI | GCNGC | 1 cut(s) | 593 |
| Sau3AI | GATC | 3 cut(s) | 75, 389, 987 |
| Sau96I | GGNCC | 2 cut(s) | 349, 742 |
| SchI | GAGTC | 1 cut(s) | 128 |
| SduI | GDGCHC | 1 cut(s) | 113 |
| SmlI | CTYRAG | 1 cut(s) | 353 |
| SmoI | CTYRAG | 1 cut(s) | 353 |
| Sse9I | AATT | 7 cut(s) | 135, 191, 246, 703, 908, 1037, 1082 |
| SseBI | AGGCCT | 1 cut(s) | 867 |
| SsiI | CCGC | 2 cut(s) | 464, 821 |
| SspMI | CTAG | 3 cut(s) | 180, 582, 863 |
| StuI | AGGCCT | 1 cut(s) | 867 |
| StyI | CCWWGG | 2 cut(s) | 494, 862 |
| TaaI | ACNGT | 2 cut(s) | 529, 573 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TaqII | GACCGA | 1 cut(s) | 629 |
| TasI | AATT | 7 cut(s) | 135, 191, 246, 703, 908, 1037, 1082 |
| TatI | WGTACW | 2 cut(s) | 139, 965 |
| TfiI | GAWTC | 1 cut(s) | 662 |
| Tru1I | TTAA | 3 cut(s) | 249, 417, 674 |
| Tru9I | TTAA | 3 cut(s) | 249, 417, 674 |
| TscAI | CASTG | 2 cut(s) | 1014, 1076 |
| TseI | GCWGC | 1 cut(s) | 592 |
| TspDTI | ATGAA | 4 cut(s) | 248, 282, 437, 953 |
| TspGWI | ACGGA | 2 cut(s) | 128, 890 |
| TspRI | CASTG | 2 cut(s) | 1014, 1076 |
| VneI | GTGCAC | 1 cut(s) | 109 |
| XapI | RAATTY | 1 cut(s) | 1082 |
| XbaI | TCTAGA | 1 cut(s) | 581 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 501 |
| XmaJI | CCTAGG | 1 cut(s) | 862 |
| XmnI | GAANNNNTTC | 1 cut(s) | 716 |
| XspI | CTAG | 3 cut(s) | 180, 582, 863 |