Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 362, 392 |
| AfaI | GTAC | 1 cut(s) | 183 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 244, 245 |
| AflIII | ACRYGT | 1 cut(s) | 184 |
| AgsI | TTSAA | 1 cut(s) | 92 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 139 |
| AluBI | AGCT | 2 cut(s) | 344, 462 |
| AluI | AGCT | 2 cut(s) | 344, 462 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AoxI | GGCC | 1 cut(s) | 67 |
| ApeKI | GCWGC | 2 cut(s) | 341, 459 |
| AspS9I | GGNCC | 1 cut(s) | 68 |
| AsuC2I | CCSGG | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 302 |
| BaeGI | GKGCMC | 1 cut(s) | 409 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 144, 176 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 1 cut(s) | 435 |
| BceAI | ACGGC | 2 cut(s) | 283, 425 |
| BcnI | CCSGG | 1 cut(s) | 11 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BfaI | CTAG | 2 cut(s) | 240, 463 |
| BisI | GCNGC | 2 cut(s) | 342, 460 |
| BlsI | GCNGC | 2 cut(s) | 343, 461 |
| Bme1390I | CCNGG | 1 cut(s) | 11 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 11 |
| BpmI | CTGGAG | 1 cut(s) | 64 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BpuMI | CCSGG | 1 cut(s) | 11 |
| BsaAI | YACGTR | 2 cut(s) | 185, 317 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 242, 243, 244, 245 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 244, 245 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseRI | GAGGAG | 2 cut(s) | 47, 223 |
| BseSI | GKGCMC | 1 cut(s) | 409 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| Bsh1285I | CGRYCG | 1 cut(s) | 136 |
| BshFI | GGCC | 1 cut(s) | 69 |
| BsiEI | CGRYCG | 1 cut(s) | 136 |
| BsiSI | CCGG | 1 cut(s) | 10 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 242, 243, 244, 245 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| BsmI | GAATGC | 1 cut(s) | 87 |
| BsnI | GGCC | 1 cut(s) | 69 |
| Bsp1286I | GDGCHC | 1 cut(s) | 409 |
| Bsp19I | CCATGG | 1 cut(s) | 286 |
| BspACI | CCGC | 2 cut(s) | 362, 392 |
| BspANI | GGCC | 1 cut(s) | 69 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssT1I | CCWWGG | 1 cut(s) | 286 |
| Bst4CI | ACNGT | 1 cut(s) | 296 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 347 |
| BstBAI | YACGTR | 2 cut(s) | 185, 317 |
| BstC8I | GCNNGC | 1 cut(s) | 352 |
| BstDEI | CTNAG | 2 cut(s) | 60, 442 |
| BstDSI | CCRYGG | 1 cut(s) | 286 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMCI | CGRYCG | 1 cut(s) | 136 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 347 |
| BstSCI | CCNGG | 1 cut(s) | 9 |
| BstSLI | GKGCMC | 1 cut(s) | 409 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BsuRI | GGCC | 1 cut(s) | 69 |
| BtgI | CCRYGG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 301 |
| Cac8I | GCNNGC | 1 cut(s) | 352 |
| Cfr13I | GGNCC | 1 cut(s) | 68 |
| Csp6I | GTAC | 1 cut(s) | 182 |
| CviAII | CATG | 3 cut(s) | 287, 326, 385 |
| CviJI | RGCY | 6 cut(s) | 69, 281, 344, 412, 422, 462 |
| CviKI_1 | RGCY | 6 cut(s) | 69, 281, 344, 412, 422, 462 |
| CviQI | GTAC | 1 cut(s) | 182 |
| DdeI | CTNAG | 2 cut(s) | 60, 442 |
| DriI | GACNNNNNGTC | 1 cut(s) | 139 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 139 |
| EciI | GGCGGA | 1 cut(s) | 407 |
| Eco130I | CCWWGG | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 1 cut(s) | 286 |
| ErhI | CCWWGG | 1 cut(s) | 286 |
| FaeI | CATG | 3 cut(s) | 290, 329, 388 |
| FaiI | YATR | 7 cut(s) | 124, 130, 276, 288, 327, 366, 386 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FatI | CATG | 3 cut(s) | 286, 325, 384 |
| FauI | CCCGC | 1 cut(s) | 369 |
| Fnu4HI | GCNGC | 2 cut(s) | 342, 460 |
| Fsp4HI | GCNGC | 2 cut(s) | 342, 460 |
| FspBI | CTAG | 2 cut(s) | 240, 463 |
| GluI | GCNGC | 2 cut(s) | 342, 460 |
| GsuI | CTGGAG | 1 cut(s) | 64 |
| HaeIII | GGCC | 1 cut(s) | 69 |
| HapII | CCGG | 1 cut(s) | 10 |
| Hin1II | CATG | 3 cut(s) | 290, 329, 388 |
| HincII | GTYRAC | 1 cut(s) | 265 |
| HindII | GTYRAC | 1 cut(s) | 265 |
| HinfI | GANTC | 2 cut(s) | 58, 140 |
| HpaII | CCGG | 1 cut(s) | 10 |
| HphI | GGTGA | 2 cut(s) | 35, 302 |
| Hpy166II | GTNNAC | 1 cut(s) | 265 |
| Hpy188I | TCNGA | 2 cut(s) | 63, 432 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 92, 164 |
| Hpy8I | GTNNAC | 1 cut(s) | 265 |
| HpyAV | CCTTC | 1 cut(s) | 20 |
| HpyCH4III | ACNGT | 1 cut(s) | 296 |
| HpyCH4IV | ACGT | 3 cut(s) | 184, 316, 368 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 347 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 442 |
| HpySE526I | ACGT | 3 cut(s) | 184, 316, 368 |
| Hsp92II | CATG | 3 cut(s) | 290, 329, 388 |
| LmnI | GCTCC | 2 cut(s) | 45, 456 |
| LpnPI | CCDG | 3 cut(s) | 23, 28, 188 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| MaeI | CTAG | 2 cut(s) | 240, 463 |
| MaeII | ACGT | 3 cut(s) | 184, 316, 368 |
| MaeIII | GTNAC | 1 cut(s) | 290 |
| MboII | GAAGA | 1 cut(s) | 461 |
| MhlI | GDGCHC | 1 cut(s) | 409 |
| MluCI | AATT | 2 cut(s) | 104, 153 |
| MlyI | GAGTC | 2 cut(s) | 52, 149 |
| MnlI | CCTC | 8 cut(s) | 25, 126, 160, 188, 201, 204, 382, 388 |
| MseI | TTAA | 3 cut(s) | 38, 107, 156 |
| MspI | CCGG | 1 cut(s) | 10 |
| MspR9I | CCNGG | 1 cut(s) | 11 |
| Mva1269I | GAATGC | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 347 |
| NciI | CCSGG | 1 cut(s) | 11 |
| NcoI | CCATGG | 1 cut(s) | 286 |
| NlaIII | CATG | 3 cut(s) | 290, 329, 388 |
| NmuCI | GTSAC | 1 cut(s) | 290 |
| PctI | GAATGC | 1 cut(s) | 87 |
| PkrI | GCNGC | 2 cut(s) | 343, 461 |
| PleI | GAGTC | 2 cut(s) | 52, 148 |
| PpsI | GAGTC | 2 cut(s) | 52, 148 |
| Ppu21I | YACGTR | 2 cut(s) | 185, 317 |
| PspPI | GGNCC | 1 cut(s) | 68 |
| RsaI | GTAC | 1 cut(s) | 183 |
| RsaNI | GTAC | 1 cut(s) | 182 |
| SaqAI | TTAA | 3 cut(s) | 38, 107, 156 |
| SatI | GCNGC | 2 cut(s) | 342, 460 |
| Sau96I | GGNCC | 1 cut(s) | 68 |
| SchI | GAGTC | 2 cut(s) | 52, 149 |
| ScrFI | CCNGG | 1 cut(s) | 11 |
| SduI | GDGCHC | 1 cut(s) | 409 |
| SetI | ASST | 6 cut(s) | 118, 187, 319, 346, 371, 464 |
| SmlI | CTYRAG | 1 cut(s) | 164 |
| SmoI | CTYRAG | 1 cut(s) | 164 |
| Sse9I | AATT | 2 cut(s) | 104, 153 |
| SsiI | CCGC | 2 cut(s) | 362, 392 |
| SspMI | CTAG | 2 cut(s) | 240, 463 |
| StyD4I | CCNGG | 1 cut(s) | 9 |
| StyI | CCWWGG | 1 cut(s) | 286 |
| TaaI | ACNGT | 1 cut(s) | 296 |
| TaiI | ACGT | 3 cut(s) | 187, 319, 371 |
| TaqII | GACCGA | 1 cut(s) | 150 |
| TasI | AATT | 2 cut(s) | 104, 153 |
| Tru1I | TTAA | 3 cut(s) | 38, 107, 156 |
| Tru9I | TTAA | 3 cut(s) | 38, 107, 156 |
| TscAI | CASTG | 1 cut(s) | 301 |
| TseFI | GTSAC | 1 cut(s) | 290 |
| TseI | GCWGC | 2 cut(s) | 341, 459 |
| Tsp45I | GTSAC | 1 cut(s) | 290 |
| TspDTI | ATGAA | 1 cut(s) | 336 |
| TspRI | CASTG | 1 cut(s) | 301 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 293 |
| XspI | CTAG | 2 cut(s) | 240, 463 |