Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AciI | CCGC | 1 cut(s) | 599 |
| AclWI | GGATC | 1 cut(s) | 132 |
| AcoI | YGGCCR | 1 cut(s) | 565 |
| AcsI | RAATTY | 1 cut(s) | 74 |
| AcvI | CACGTG | 1 cut(s) | 130 |
| AfaI | GTAC | 3 cut(s) | 151, 391, 397 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 121 |
| AflIII | ACRYGT | 1 cut(s) | 352 |
| AgsI | TTSAA | 3 cut(s) | 80, 140, 240 |
| AhlI | ACTAGT | 1 cut(s) | 392 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AluBI | AGCT | 3 cut(s) | 83, 227, 533 |
| AluI | AGCT | 3 cut(s) | 83, 227, 533 |
| Alw21I | GWGCWC | 1 cut(s) | 541 |
| Alw26I | GTCTC | 2 cut(s) | 171, 341 |
| AlwI | GGATC | 1 cut(s) | 132 |
| Ama87I | CYCGRG | 1 cut(s) | 399 |
| AoxI | GGCC | 1 cut(s) | 565 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| ApoI | RAATTY | 1 cut(s) | 74 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 538, 570 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 169, 465 |
| AvaI | CYCGRG | 1 cut(s) | 399 |
| AvaII | GGWCC | 1 cut(s) | 301 |
| BalI | TGGCCA | 1 cut(s) | 567 |
| BbrPI | CACGTG | 1 cut(s) | 130 |
| Bbv12I | GWGCWC | 1 cut(s) | 541 |
| BbvI | GCAGC | 1 cut(s) | 13 |
| BccI | CCATC | 4 cut(s) | 64, 312, 453, 511 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BcoDI | GTCTC | 2 cut(s) | 171, 341 |
| BcuI | ACTAGT | 1 cut(s) | 392 |
| BfaI | CTAG | 3 cut(s) | 312, 393, 524 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| BmcAI | AGTACT | 1 cut(s) | 397 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 1 cut(s) | 301 |
| BmeT110I | CYCGRG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 1 cut(s) | 301 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 2 cut(s) | 154, 373 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 81, 113 |
| BpmI | CTGGAG | 1 cut(s) | 555 |
| BsaAI | YACGTR | 1 cut(s) | 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 1 cut(s) | 153 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 121 |
| Bse8I | GATNNNNATC | 1 cut(s) | 123 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 1 cut(s) | 153 |
| BseGI | GGATG | 3 cut(s) | 209, 373, 388 |
| BseJI | GATNNNNATC | 1 cut(s) | 123 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseXI | GCAGC | 1 cut(s) | 13 |
| BshFI | GGCC | 1 cut(s) | 567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 541 |
| BsiHKCI | CYCGRG | 1 cut(s) | 399 |
| BslFI | GGGAC | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BsmAI | GTCTC | 2 cut(s) | 171, 341 |
| BsmFI | GGGAC | 1 cut(s) | 24 |
| BsnI | GGCC | 1 cut(s) | 567 |
| BsoBI | CYCGRG | 1 cut(s) | 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 541 |
| Bsp143I | GATC | 1 cut(s) | 124 |
| Bsp19I | CCATGG | 1 cut(s) | 153 |
| BspACI | CCGC | 1 cut(s) | 599 |
| BspANI | GGCC | 1 cut(s) | 567 |
| BspCNI | CTCAG | 1 cut(s) | 187 |
| BspPI | GGATC | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 153 |
| BssMI | GATC | 1 cut(s) | 124 |
| BssT1I | CCWWGG | 1 cut(s) | 153 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 149 |
| BstBAI | YACGTR | 1 cut(s) | 130 |
| BstDEI | CTNAG | 2 cut(s) | 195, 325 |
| BstDSI | CCRYGG | 1 cut(s) | 153 |
| BstF5I | GGATG | 3 cut(s) | 209, 373, 388 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 1 cut(s) | 127 |
| BstMAI | GTCTC | 2 cut(s) | 171, 341 |
| BstMBI | GATC | 1 cut(s) | 124 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 89 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstNSI | RCATGY | 1 cut(s) | 356 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 13 |
| BsuRI | GGCC | 1 cut(s) | 567 |
| BtgI | CCRYGG | 1 cut(s) | 153 |
| BtsCI | GGATG | 3 cut(s) | 209, 373, 388 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| CfoI | GCGC | 1 cut(s) | 443 |
| Cfr13I | GGNCC | 1 cut(s) | 301 |
| Csp6I | GTAC | 3 cut(s) | 150, 390, 396 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 267, 302, 412, 447 |
| CviAII | CATG | 3 cut(s) | 50, 154, 353 |
| CviJI | RGCY | 5 cut(s) | 83, 227, 435, 533, 567 |
| CviKI_1 | RGCY | 5 cut(s) | 83, 227, 435, 533, 567 |
| CviQI | GTAC | 3 cut(s) | 150, 390, 396 |
| DdeI | CTNAG | 2 cut(s) | 195, 325 |
| DpnI | GATC | 1 cut(s) | 126 |
| DpnII | GATC | 1 cut(s) | 124 |
| EaeI | YGGCCR | 1 cut(s) | 565 |
| Eco130I | CCWWGG | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 301 |
| Eco72I | CACGTG | 1 cut(s) | 130 |
| Eco88I | CYCGRG | 1 cut(s) | 399 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 1 cut(s) | 153 |
| ErhI | CCWWGG | 1 cut(s) | 153 |
| FaeI | CATG | 3 cut(s) | 53, 157, 356 |
| FaqI | GGGAC | 1 cut(s) | 24 |
| FatI | CATG | 3 cut(s) | 49, 153, 352 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| FokI | GGATG | 3 cut(s) | 216, 380, 395 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| FspBI | CTAG | 3 cut(s) | 312, 393, 524 |
| GlaI | GCGC | 1 cut(s) | 442 |
| GluI | GCNGC | 1 cut(s) | 27 |
| GsuI | CTGGAG | 1 cut(s) | 555 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 567 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1II | CATG | 3 cut(s) | 53, 157, 356 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HindIII | AAGCTT | 1 cut(s) | 225 |
| HinfI | GANTC | 1 cut(s) | 96 |
| HphI | GGTGA | 3 cut(s) | 104, 169, 465 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188I | TCNGA | 2 cut(s) | 69, 196 |
| Hpy188III | TCNNGA | 2 cut(s) | 272, 524 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 1 cut(s) | 513 |
| HpyAV | CCTTC | 2 cut(s) | 255, 450 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 149 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 1 cut(s) | 167 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 89 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 325 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 3 cut(s) | 53, 157, 356 |
| HspAI | GCGC | 1 cut(s) | 441 |
| Kzo9I | GATC | 1 cut(s) | 124 |
| LmnI | GCTCC | 1 cut(s) | 536 |
| LpnPI | CCDG | 4 cut(s) | 78, 350, 377, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 13 |
| LweI | GCATC | 2 cut(s) | 154, 373 |
| MaeI | CTAG | 3 cut(s) | 312, 393, 524 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 1 cut(s) | 126 |
| MboI | GATC | 1 cut(s) | 124 |
| MboII | GAAGA | 2 cut(s) | 197, 240 |
| MhlI | GDGCHC | 1 cut(s) | 541 |
| MlsI | TGGCCA | 1 cut(s) | 567 |
| MluCI | AATT | 3 cut(s) | 74, 240, 469 |
| MluNI | TGGCCA | 1 cut(s) | 567 |
| MlyI | GAGTC | 1 cut(s) | 90 |
| MnlI | CCTC | 3 cut(s) | 190, 208, 373 |
| Mox20I | TGGCCA | 1 cut(s) | 567 |
| MscI | TGGCCA | 1 cut(s) | 567 |
| Msp20I | TGGCCA | 1 cut(s) | 567 |
| MspA1I | CMGCKG | 1 cut(s) | 533 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 89 |
| NcoI | CCATGG | 1 cut(s) | 153 |
| NdeII | GATC | 1 cut(s) | 124 |
| NlaIII | CATG | 3 cut(s) | 53, 157, 356 |
| NspI | RCATGY | 1 cut(s) | 356 |
| PaeR7I | CTCGAG | 1 cut(s) | 399 |
| PciI | ACATGT | 1 cut(s) | 352 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PfoI | TCCNGGA | 1 cut(s) | 363 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PmaCI | CACGTG | 1 cut(s) | 130 |
| PmlI | CACGTG | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| Ppu21I | YACGTR | 1 cut(s) | 130 |
| PscI | ACATGT | 1 cut(s) | 352 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspCI | CACGTG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspPI | GGNCC | 1 cut(s) | 301 |
| PspXI | VCTCGAGB | 1 cut(s) | 399 |
| PvuII | CAGCTG | 1 cut(s) | 533 |
| RsaI | GTAC | 3 cut(s) | 151, 391, 397 |
| RsaNI | GTAC | 3 cut(s) | 150, 390, 396 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau3AI | GATC | 1 cut(s) | 124 |
| Sau96I | GGNCC | 1 cut(s) | 301 |
| ScaI | AGTACT | 1 cut(s) | 397 |
| SchI | GAGTC | 1 cut(s) | 90 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SduI | GDGCHC | 1 cut(s) | 541 |
| SetI | ASST | 5 cut(s) | 85, 132, 201, 229, 535 |
| SfaNI | GCATC | 2 cut(s) | 154, 373 |
| Sfr274I | CTCGAG | 1 cut(s) | 399 |
| SinI | GGWCC | 1 cut(s) | 301 |
| SlaI | CTCGAG | 1 cut(s) | 399 |
| SmlI | CTYRAG | 1 cut(s) | 399 |
| SmoI | CTYRAG | 1 cut(s) | 399 |
| SpeI | ACTAGT | 1 cut(s) | 392 |
| Sse9I | AATT | 3 cut(s) | 74, 240, 469 |
| SsiI | CCGC | 1 cut(s) | 599 |
| SspMI | CTAG | 3 cut(s) | 312, 393, 524 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| StyI | CCWWGG | 1 cut(s) | 153 |
| TaaI | ACNGT | 2 cut(s) | 10, 149 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 3 cut(s) | 55, 400, 508 |
| TasI | AATT | 3 cut(s) | 74, 240, 469 |
| TatI | WGTACW | 2 cut(s) | 389, 395 |
| TscAI | CASTG | 1 cut(s) | 37 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 2 cut(s) | 240, 593 |
| TspGWI | ACGGA | 1 cut(s) | 158 |
| TspRI | CASTG | 1 cut(s) | 37 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 1 cut(s) | 301 |
| XapI | RAATTY | 1 cut(s) | 74 |
| XbaI | TCTAGA | 1 cut(s) | 523 |
| XceI | RCATGY | 1 cut(s) | 356 |
| XhoI | CTCGAG | 1 cut(s) | 399 |
| XspI | CTAG | 3 cut(s) | 312, 393, 524 |
| ZrmI | AGTACT | 1 cut(s) | 397 |