Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 217 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1494 |
| AccI | GTMKAC | 2 cut(s) | 5, 904 |
| AccII | CGCG | 1 cut(s) | 767 |
| AciI | CCGC | 3 cut(s) | 765, 1529, 1735 |
| AclWI | GGATC | 4 cut(s) | 257, 1357, 1445, 1608 |
| AcoI | YGGCCR | 2 cut(s) | 1305, 1729 |
| AcsI | RAATTY | 2 cut(s) | 364, 555 |
| AcuI | CTGAAG | 1 cut(s) | 1447 |
| AfaI | GTAC | 2 cut(s) | 122, 1338 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1162, 1418, 1494 |
| AflIII | ACRYGT | 3 cut(s) | 661, 718, 928 |
| AhlI | ACTAGT | 1 cut(s) | 448 |
| AjnI | CCWGG | 2 cut(s) | 1256, 1645 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 350, 382 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 708, 740 |
| AluBI | AGCT | 9 cut(s) | 25, 43, 170, 617, 701, 947, 1091, 1566, 1594 |
| AluI | AGCT | 9 cut(s) | 25, 43, 170, 617, 701, 947, 1091, 1566, 1594 |
| Alw21I | GWGCWC | 1 cut(s) | 1325 |
| Alw26I | GTCTC | 3 cut(s) | 995, 1002, 1702 |
| AlwI | GGATC | 4 cut(s) | 257, 1357, 1445, 1608 |
| Ama87I | CYCGRG | 1 cut(s) | 1249 |
| AoxI | GGCC | 6 cut(s) | 207, 278, 528, 1305, 1391, 1729 |
| ApaI | GGGCCC | 1 cut(s) | 1395 |
| ApeKI | GCWGC | 8 cut(s) | 22, 40, 506, 517, 922, 959, 1676, 1737 |
| ApoI | RAATTY | 2 cut(s) | 364, 555 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 4 cut(s) | 208, 724, 1391, 1392 |
| AsuC2I | CCSGG | 4 cut(s) | 728, 1133, 1250, 1251 |
| AsuHPI | GGTGA | 5 cut(s) | 382, 1177, 1598, 1614, 1686 |
| AsuII | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| AvaI | CYCGRG | 1 cut(s) | 1249 |
| AvaII | GGWCC | 1 cut(s) | 724 |
| AxyI | CCTNAGG | 1 cut(s) | 843 |
| BaeGI | GKGCMC | 1 cut(s) | 1395 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 284, 317 |
| BalI | TGGCCA | 2 cut(s) | 1307, 1731 |
| BanII | GRGCYC | 1 cut(s) | 1395 |
| BauI | CACGAG | 1 cut(s) | 100 |
| BbsI | GAAGAC | 1 cut(s) | 1132 |
| Bbv12I | GWGCWC | 1 cut(s) | 1325 |
| BbvCI | CCTCAGC | 2 cut(s) | 189, 1562 |
| BbvI | GCAGC | 8 cut(s) | 34, 52, 493, 504, 934, 971, 1663, 1724 |
| BccI | CCATC | 3 cut(s) | 155, 230, 1414 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1520, 1554 |
| BciT130I | CCWGG | 2 cut(s) | 1258, 1647 |
| BcnI | CCSGG | 4 cut(s) | 728, 1133, 1250, 1251 |
| BcoDI | GTCTC | 3 cut(s) | 995, 1002, 1702 |
| BcuI | ACTAGT | 1 cut(s) | 448 |
| BfaI | CTAG | 2 cut(s) | 390, 449 |
| BfuAI | ACCTGC | 1 cut(s) | 217 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1313 |
| BglII | AGATCT | 1 cut(s) | 1513 |
| BisI | GCNGC | 9 cut(s) | 23, 41, 507, 518, 923, 960, 1529, 1677, 1738 |
| BlsI | GCNGC | 9 cut(s) | 24, 42, 508, 519, 924, 961, 1530, 1678, 1739 |
| Bme1390I | CCNGG | 6 cut(s) | 728, 1133, 1250, 1251, 1258, 1647 |
| Bme18I | GGWCC | 1 cut(s) | 724 |
| BmeT110I | CYCGRG | 1 cut(s) | 1249 |
| BmgT120I | GGNCC | 4 cut(s) | 208, 724, 1391, 1392 |
| BmiI | GGNNCC | 3 cut(s) | 1255, 1393, 1447 |
| BmrFI | CCNGG | 6 cut(s) | 728, 1133, 1250, 1251, 1258, 1647 |
| BmsI | GCATC | 8 cut(s) | 376, 385, 454, 466, 571, 664, 946, 1162 |
| BoxI | GACNNNNGTC | 1 cut(s) | 33 |
| BpiI | GAAGAC | 1 cut(s) | 1132 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 326, 358 |
| Bpu10I | CCTNAGC | 2 cut(s) | 189, 1562 |
| Bpu14I | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| BpuMI | CCSGG | 4 cut(s) | 728, 1133, 1250, 1251 |
| BsaAI | YACGTR | 1 cut(s) | 590 |
| BsaI | GGTCTC | 1 cut(s) | 995 |
| BsaJI | CCNNGG | 4 cut(s) | 211, 266, 275, 1249 |
| BsaWI | WCCGGW | 1 cut(s) | 1696 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1711, 1741 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1162, 1418, 1494 |
| Bse1I | ACTGG | 2 cut(s) | 646, 1725 |
| Bse21I | CCTNAGG | 1 cut(s) | 843 |
| BseBI | CCWGG | 2 cut(s) | 1258, 1647 |
| BseDI | CCNNGG | 4 cut(s) | 211, 266, 275, 1249 |
| BseGI | GGATG | 1 cut(s) | 1177 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1162, 1418, 1494 |
| BseNI | ACTGG | 2 cut(s) | 646, 1725 |
| BseRI | GAGGAG | 3 cut(s) | 1401, 1458, 1474 |
| BseSI | GKGCMC | 1 cut(s) | 1395 |
| BseXI | GCAGC | 8 cut(s) | 34, 52, 493, 504, 934, 971, 1663, 1724 |
| Bsh1236I | CGCG | 1 cut(s) | 767 |
| BshFI | GGCC | 6 cut(s) | 209, 280, 530, 1307, 1393, 1731 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1325 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1249 |
| BsiSI | CCGG | 5 cut(s) | 727, 1133, 1250, 1435, 1697 |
| BslFI | GGGAC | 1 cut(s) | 1222 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1162, 1418, 1494 |
| BsmAI | GTCTC | 3 cut(s) | 995, 1002, 1702 |
| BsmFI | GGGAC | 1 cut(s) | 1222 |
| BsmI | GAATGC | 1 cut(s) | 520 |
| BsnI | GGCC | 6 cut(s) | 209, 280, 530, 1307, 1393, 1731 |
| Bso31I | GGTCTC | 1 cut(s) | 995 |
| BsoBI | CYCGRG | 1 cut(s) | 1249 |
| Bsp119I | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| Bsp120I | GGGCCC | 1 cut(s) | 1391 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1325, 1395 |
| BspACI | CCGC | 3 cut(s) | 765, 1529, 1735 |
| BspANI | GGCC | 6 cut(s) | 209, 280, 530, 1307, 1393, 1731 |
| BspFNI | CGCG | 1 cut(s) | 767 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspLI | GGNNCC | 3 cut(s) | 1255, 1393, 1447 |
| BspMI | ACCTGC | 1 cut(s) | 217 |
| BspPI | GGATC | 4 cut(s) | 257, 1357, 1445, 1608 |
| BspQI | GCTCTTC | 1 cut(s) | 1330 |
| BspT104I | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| BspTNI | GGTCTC | 1 cut(s) | 995 |
| BsrI | ACTGG | 2 cut(s) | 646, 1725 |
| BssECI | CCNNGG | 4 cut(s) | 211, 266, 275, 1249 |
| BssSI | CACGAG | 1 cut(s) | 100 |
| BssT1I | CCWWGG | 2 cut(s) | 266, 275 |
| Bst2BI | CACGAG | 1 cut(s) | 100 |
| Bst2UI | CCWGG | 2 cut(s) | 1258, 1647 |
| Bst4CI | ACNGT | 6 cut(s) | 10, 381, 640, 1125, 1430, 1535 |
| Bst6I | CTCTTC | 4 cut(s) | 768, 1330, 1359, 1466 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 473 |
| BstBAI | YACGTR | 1 cut(s) | 590 |
| BstBI | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| BstC8I | GCNNGC | 2 cut(s) | 504, 1102 |
| BstDSI | CCRYGG | 1 cut(s) | 211 |
| BstF5I | GGATG | 1 cut(s) | 1177 |
| BstFNI | CGCG | 1 cut(s) | 767 |
| BstMAI | GTCTC | 3 cut(s) | 995, 1002, 1702 |
| BstNI | CCWGG | 2 cut(s) | 1258, 1647 |
| BstNSI | RCATGY | 4 cut(s) | 665, 722, 932, 1104 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 33 |
| BstSCI | CCNGG | 6 cut(s) | 726, 1131, 1248, 1249, 1256, 1645 |
| BstSLI | GKGCMC | 1 cut(s) | 1395 |
| BstUI | CGCG | 1 cut(s) | 767 |
| BstV1I | GCAGC | 8 cut(s) | 34, 52, 493, 504, 934, 971, 1663, 1724 |
| BstV2I | GAAGAC | 1 cut(s) | 1132 |
| BstX2I | RGATCY | 4 cut(s) | 262, 1349, 1513, 1600 |
| BstYI | RGATCY | 4 cut(s) | 262, 1349, 1513, 1600 |
| Bsu36I | CCTNAGG | 1 cut(s) | 843 |
| BsuRI | GGCC | 6 cut(s) | 209, 280, 530, 1307, 1393, 1731 |
| BtgI | CCRYGG | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 1177 |
| BtsI | GCAGTG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 5 cut(s) | 150, 207, 978, 1531, 1732 |
| BveI | ACCTGC | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 2 cut(s) | 504, 1102 |
| CciI | TCATGA | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 4 cut(s) | 208, 724, 1391, 1392 |
| Cfr9I | CCCGGG | 1 cut(s) | 1249 |
| Csp6I | GTAC | 2 cut(s) | 121, 1337 |
| CviAII | CATG | 6 cut(s) | 461, 662, 719, 929, 1101, 1268 |
| CviQI | GTAC | 2 cut(s) | 121, 1337 |
| DraI | TTTAAA | 1 cut(s) | 292 |
| EaeI | YGGCCR | 2 cut(s) | 1305, 1729 |
| Eam1104I | CTCTTC | 4 cut(s) | 768, 1330, 1359, 1466 |
| EarI | CTCTTC | 4 cut(s) | 768, 1330, 1359, 1466 |
| Eco130I | CCWWGG | 2 cut(s) | 266, 275 |
| Eco24I | GRGCYC | 1 cut(s) | 1395 |
| Eco31I | GGTCTC | 1 cut(s) | 995 |
| Eco32I | GATATC | 1 cut(s) | 54 |
| Eco47I | GGWCC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 1 cut(s) | 1447 |
| Eco81I | CCTNAGG | 1 cut(s) | 843 |
| Eco88I | CYCGRG | 1 cut(s) | 1249 |
| EcoRII | CCWGG | 2 cut(s) | 1256, 1645 |
| EcoRV | GATATC | 1 cut(s) | 54 |
| EcoT14I | CCWWGG | 2 cut(s) | 266, 275 |
| EcoT38I | GRGCYC | 1 cut(s) | 1395 |
| ErhI | CCWWGG | 2 cut(s) | 266, 275 |
| FaeI | CATG | 6 cut(s) | 464, 665, 722, 932, 1104, 1271 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1634, 1666 |
| FaqI | GGGAC | 1 cut(s) | 1222 |
| FatI | CATG | 6 cut(s) | 460, 661, 718, 928, 1100, 1267 |
| FauNDI | CATATG | 2 cut(s) | 32, 739 |
| FblI | GTMKAC | 2 cut(s) | 5, 904 |
| Fnu4HI | GCNGC | 9 cut(s) | 23, 41, 507, 518, 923, 960, 1529, 1677, 1738 |
| FokI | GGATG | 1 cut(s) | 1184 |
| FriOI | GRGCYC | 1 cut(s) | 1395 |
| Fsp4HI | GCNGC | 9 cut(s) | 23, 41, 507, 518, 923, 960, 1529, 1677, 1738 |
| FspBI | CTAG | 2 cut(s) | 390, 449 |
| GluI | GCNGC | 9 cut(s) | 23, 41, 507, 518, 923, 960, 1529, 1677, 1738 |
| HaeIII | GGCC | 6 cut(s) | 209, 280, 530, 1307, 1393, 1731 |
| HapII | CCGG | 5 cut(s) | 727, 1133, 1250, 1435, 1697 |
| Hin1II | CATG | 6 cut(s) | 464, 665, 722, 932, 1104, 1271 |
| HincII | GTYRAC | 2 cut(s) | 6, 310 |
| HindII | GTYRAC | 2 cut(s) | 6, 310 |
| HindIII | AAGCTT | 2 cut(s) | 615, 1592 |
| HinfI | GANTC | 7 cut(s) | 64, 968, 1010, 1210, 1422, 1586, 1710 |
| HpaII | CCGG | 5 cut(s) | 727, 1133, 1250, 1435, 1697 |
| HphI | GGTGA | 5 cut(s) | 382, 1177, 1598, 1614, 1686 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 310, 905, 1051, 1060 |
| Hpy188I | TCNGA | 9 cut(s) | 113, 346, 420, 939, 1007, 1179, 1192, 1442, 1513 |
| Hpy188III | TCNNGA | 6 cut(s) | 100, 429, 461, 992, 1277, 1419 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 310, 905, 1051, 1060 |
| Hpy99I | CGWCG | 1 cut(s) | 1434 |
| HpyAV | CCTTC | 5 cut(s) | 138, 883, 1162, 1425, 1459 |
| HpyCH4III | ACNGT | 6 cut(s) | 10, 381, 640, 1125, 1430, 1535 |
| HpyCH4IV | ACGT | 1 cut(s) | 589 |
| HpyCH4V | TGCA | 8 cut(s) | 252, 398, 467, 520, 693, 959, 979, 1117 |
| HpySE526I | ACGT | 1 cut(s) | 589 |
| Hsp92II | CATG | 6 cut(s) | 464, 665, 722, 932, 1104, 1271 |
| LguI | GCTCTTC | 1 cut(s) | 1330 |
| LmnI | GCTCC | 2 cut(s) | 767, 1445 |
| Lsp1109I | GCAGC | 8 cut(s) | 34, 52, 493, 504, 934, 971, 1663, 1724 |
| LweI | GCATC | 8 cut(s) | 376, 385, 454, 466, 571, 664, 946, 1162 |
| MaeI | CTAG | 2 cut(s) | 390, 449 |
| MaeII | ACGT | 1 cut(s) | 589 |
| MaeIII | GTNAC | 6 cut(s) | 97, 1148, 1370, 1378, 1497, 1692 |
| MboII | GAAGA | 9 cut(s) | 123, 272, 785, 925, 1132, 1317, 1346, 1453, 1595 |
| MflI | RGATCY | 4 cut(s) | 262, 1349, 1513, 1600 |
| MhlI | GDGCHC | 2 cut(s) | 1325, 1395 |
| MlsI | TGGCCA | 2 cut(s) | 1307, 1731 |
| MluCI | AATT | 9 cut(s) | 364, 555, 848, 898, 1118, 1239, 1301, 1396, 1489 |
| MluNI | TGGCCA | 2 cut(s) | 1307, 1731 |
| MlyI | GAGTC | 4 cut(s) | 962, 1004, 1204, 1704 |
| MmeI | TCCRAC | 4 cut(s) | 155, 750, 798, 1697 |
| Mox20I | TGGCCA | 2 cut(s) | 1307, 1731 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 2 cut(s) | 1307, 1731 |
| MseI | TTAA | 3 cut(s) | 291, 942, 1238 |
| MslI | CAYNNNNRTG | 1 cut(s) | 462 |
| Msp20I | TGGCCA | 2 cut(s) | 1307, 1731 |
| MspA1I | CMGCKG | 3 cut(s) | 43, 701, 1737 |
| MspI | CCGG | 5 cut(s) | 727, 1133, 1250, 1435, 1697 |
| MspR9I | CCNGG | 6 cut(s) | 728, 1133, 1250, 1251, 1258, 1647 |
| MssI | GTTTAAAC | 1 cut(s) | 292 |
| Mva1269I | GAATGC | 1 cut(s) | 520 |
| MvaI | CCWGG | 2 cut(s) | 1258, 1647 |
| MvnI | CGCG | 1 cut(s) | 767 |
| NciI | CCSGG | 4 cut(s) | 728, 1133, 1250, 1251 |
| NdeI | CATATG | 2 cut(s) | 32, 739 |
| NlaIII | CATG | 6 cut(s) | 464, 665, 722, 932, 1104, 1271 |
| NlaIV | GGNNCC | 3 cut(s) | 1255, 1393, 1447 |
| NmeAIII | GCCGAG | 2 cut(s) | 40, 85 |
| NmuCI | GTSAC | 3 cut(s) | 97, 1148, 1692 |
| NspI | RCATGY | 4 cut(s) | 665, 722, 932, 1104 |
| NspV | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| PaeI | GCATGC | 1 cut(s) | 1104 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PciI | ACATGT | 3 cut(s) | 661, 718, 928 |
| PciSI | GCTCTTC | 1 cut(s) | 1330 |
| PctI | GAATGC | 1 cut(s) | 520 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 64, 1422, 1586 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1494 |
| PfoI | TCCNGGA | 1 cut(s) | 726 |
| PkrI | GCNGC | 9 cut(s) | 24, 42, 508, 519, 924, 961, 1530, 1678, 1739 |
| PleI | GAGTC | 4 cut(s) | 962, 1004, 1204, 1704 |
| PmeI | GTTTAAAC | 1 cut(s) | 292 |
| PpsI | GAGTC | 4 cut(s) | 962, 1004, 1204, 1704 |
| Ppu21I | YACGTR | 1 cut(s) | 590 |
| PscI | ACATGT | 3 cut(s) | 661, 718, 928 |
| PshAI | GACNNNNGTC | 1 cut(s) | 33 |
| Psp6I | CCWGG | 2 cut(s) | 1256, 1645 |
| PspGI | CCWGG | 2 cut(s) | 1256, 1645 |
| PspN4I | GGNNCC | 3 cut(s) | 1255, 1393, 1447 |
| PspOMI | GGGCCC | 1 cut(s) | 1391 |
| PspPI | GGNCC | 4 cut(s) | 208, 724, 1391, 1392 |
| PsuI | RGATCY | 4 cut(s) | 262, 1349, 1513, 1600 |
| PvuII | CAGCTG | 2 cut(s) | 43, 701 |
| RsaI | GTAC | 2 cut(s) | 122, 1338 |
| RsaNI | GTAC | 2 cut(s) | 121, 1337 |
| RseI | CAYNNNNRTG | 1 cut(s) | 462 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SapI | GCTCTTC | 1 cut(s) | 1330 |
| SaqAI | TTAA | 3 cut(s) | 291, 942, 1238 |
| SatI | GCNGC | 9 cut(s) | 23, 41, 507, 518, 923, 960, 1529, 1677, 1738 |
| Sau96I | GGNCC | 4 cut(s) | 208, 724, 1391, 1392 |
| SchI | GAGTC | 4 cut(s) | 962, 1004, 1204, 1704 |
| ScrFI | CCNGG | 6 cut(s) | 728, 1133, 1250, 1251, 1258, 1647 |
| SduI | GDGCHC | 2 cut(s) | 1325, 1395 |
| SfaNI | GCATC | 8 cut(s) | 376, 385, 454, 466, 571, 664, 946, 1162 |
| SfuI | TTCGAA | 3 cut(s) | 578, 1143, 1589 |
| SinI | GGWCC | 1 cut(s) | 724 |
| SmaI | CCCGGG | 1 cut(s) | 1251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 462 |
| SpeI | ACTAGT | 1 cut(s) | 448 |
| SphI | GCATGC | 1 cut(s) | 1104 |
| Sse9I | AATT | 9 cut(s) | 364, 555, 848, 898, 1118, 1239, 1301, 1396, 1489 |
| SsiI | CCGC | 3 cut(s) | 765, 1529, 1735 |
| SspMI | CTAG | 2 cut(s) | 390, 449 |
| StyD4I | CCNGG | 6 cut(s) | 726, 1131, 1248, 1249, 1256, 1645 |
| StyI | CCWWGG | 2 cut(s) | 266, 275 |
| TaaI | ACNGT | 6 cut(s) | 10, 381, 640, 1125, 1430, 1535 |
| TaiI | ACGT | 1 cut(s) | 592 |
| TasI | AATT | 9 cut(s) | 364, 555, 848, 898, 1118, 1239, 1301, 1396, 1489 |
| TauI | GCSGC | 1 cut(s) | 1531 |
| TfiI | GAWTC | 3 cut(s) | 64, 1422, 1586 |
| Tru1I | TTAA | 3 cut(s) | 291, 942, 1238 |
| Tru9I | TTAA | 3 cut(s) | 291, 942, 1238 |
| TscAI | CASTG | 5 cut(s) | 157, 207, 978, 1538, 1732 |
| TseFI | GTSAC | 3 cut(s) | 97, 1148, 1692 |
| TseI | GCWGC | 8 cut(s) | 22, 40, 506, 517, 922, 959, 1676, 1737 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 1148, 1692 |
| TspDTI | ATGAA | 3 cut(s) | 123, 513, 1256 |
| TspMI | CCCGGG | 1 cut(s) | 1249 |
| TspRI | CASTG | 5 cut(s) | 157, 207, 978, 1538, 1732 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1494 |
| VpaK11BI | GGWCC | 1 cut(s) | 724 |
| XapI | RAATTY | 2 cut(s) | 364, 555 |
| XceI | RCATGY | 4 cut(s) | 665, 722, 932, 1104 |
| XmaI | CCCGGG | 1 cut(s) | 1249 |
| XmiI | GTMKAC | 2 cut(s) | 5, 904 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 390, 449 |