Polygalacturonase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 45 - 121 | 3.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 121 |
| AccB1I | GGYRCC | 1 cut(s) | 143 |
| AclWI | GGATC | 1 cut(s) | 428 |
| AfaI | GTAC | 2 cut(s) | 78, 400 |
| AflIII | ACRYGT | 1 cut(s) | 256 |
| AgsI | TTSAA | 1 cut(s) | 329 |
| AhlI | ACTAGT | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| AluBI | AGCT | 7 cut(s) | 25, 62, 215, 246, 251, 310, 347 |
| AluI | AGCT | 7 cut(s) | 25, 62, 215, 246, 251, 310, 347 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| AlwI | GGATC | 1 cut(s) | 428 |
| ApeKI | GCWGC | 2 cut(s) | 30, 215 |
| BanI | GGYRCC | 1 cut(s) | 143 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BbvI | GCAGC | 2 cut(s) | 17, 202 |
| BccI | CCATC | 2 cut(s) | 134, 281 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BcuI | ACTAGT | 1 cut(s) | 359 |
| BfaI | CTAG | 2 cut(s) | 44, 360 |
| BfmI | CTRYAG | 2 cut(s) | 72, 311 |
| BfuAI | ACCTGC | 1 cut(s) | 121 |
| BisI | GCNGC | 2 cut(s) | 31, 216 |
| BlpI | GCTNAGC | 1 cut(s) | 247 |
| BlsI | GCNGC | 2 cut(s) | 32, 217 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmiI | GGNNCC | 1 cut(s) | 145 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BpmI | CTGGAG | 2 cut(s) | 69, 189 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 247 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| Bse1I | ACTGG | 1 cut(s) | 172 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseMII | CTCAG | 1 cut(s) | 261 |
| BseNI | ACTGG | 1 cut(s) | 172 |
| BseXI | GCAGC | 2 cut(s) | 17, 202 |
| BshNI | GGYRCC | 1 cut(s) | 143 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp1407I | TGTACA | 1 cut(s) | 398 |
| Bsp143I | GATC | 2 cut(s) | 382, 420 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 247 |
| BspCNI | CTCAG | 1 cut(s) | 260 |
| BspLI | GGNNCC | 1 cut(s) | 145 |
| BspMI | ACCTGC | 1 cut(s) | 121 |
| BspPI | GGATC | 1 cut(s) | 428 |
| BspT107I | GGYRCC | 1 cut(s) | 143 |
| BsrGI | TGTACA | 1 cut(s) | 398 |
| BsrI | ACTGG | 1 cut(s) | 172 |
| BssMI | GATC | 2 cut(s) | 382, 420 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 2 cut(s) | 76, 97 |
| BstAUI | TGTACA | 1 cut(s) | 398 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstDEI | CTNAG | 2 cut(s) | 151, 247 |
| BstKTI | GATC | 2 cut(s) | 385, 423 |
| BstMBI | GATC | 2 cut(s) | 382, 420 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstNSI | RCATGY | 1 cut(s) | 260 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstSFI | CTRYAG | 2 cut(s) | 72, 311 |
| BstV1I | GCAGC | 2 cut(s) | 17, 202 |
| BveI | ACCTGC | 1 cut(s) | 121 |
| Csp6I | GTAC | 2 cut(s) | 77, 399 |
| CviAII | CATG | 2 cut(s) | 105, 257 |
| CviQI | GTAC | 2 cut(s) | 77, 399 |
| DdeI | CTNAG | 2 cut(s) | 151, 247 |
| DpnI | GATC | 2 cut(s) | 384, 422 |
| DpnII | GATC | 2 cut(s) | 382, 420 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| FaeI | CATG | 2 cut(s) | 108, 260 |
| FaiI | YATR | 7 cut(s) | 106, 125, 212, 236, 240, 258, 397 |
| FatI | CATG | 2 cut(s) | 104, 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 216 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 216 |
| FspBI | CTAG | 2 cut(s) | 44, 360 |
| GluI | GCNGC | 2 cut(s) | 31, 216 |
| GsuI | CTGGAG | 2 cut(s) | 69, 189 |
| Hin1II | CATG | 2 cut(s) | 108, 260 |
| HinfI | GANTC | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 2 cut(s) | 66, 278 |
| Hpy188III | TCNNGA | 1 cut(s) | 55 |
| HpyAV | CCTTC | 1 cut(s) | 275 |
| HpyCH4III | ACNGT | 2 cut(s) | 76, 97 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 151, 247 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Hsp92II | CATG | 2 cut(s) | 108, 260 |
| Kzo9I | GATC | 2 cut(s) | 382, 420 |
| LpnPI | CCDG | 7 cut(s) | 68, 72, 99, 126, 145, 153, 186 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 202 |
| MaeI | CTAG | 2 cut(s) | 44, 360 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 3 cut(s) | 191, 203, 355 |
| MalI | GATC | 2 cut(s) | 384, 422 |
| MboI | GATC | 2 cut(s) | 382, 420 |
| MfeI | CAATTG | 1 cut(s) | 12 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 4 cut(s) | 12, 128, 231, 285 |
| MlyI | GAGTC | 1 cut(s) | 188 |
| MnlI | CCTC | 3 cut(s) | 40, 93, 164 |
| MseI | TTAA | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MunI | CAATTG | 1 cut(s) | 12 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| NdeII | GATC | 2 cut(s) | 382, 420 |
| NlaIII | CATG | 2 cut(s) | 108, 260 |
| NlaIV | GGNNCC | 1 cut(s) | 145 |
| NmuCI | GTSAC | 2 cut(s) | 191, 203 |
| NspI | RCATGY | 1 cut(s) | 260 |
| PciI | ACATGT | 1 cut(s) | 256 |
| PfoI | TCCNGGA | 1 cut(s) | 85 |
| PkrI | GCNGC | 2 cut(s) | 32, 217 |
| PleI | GAGTC | 1 cut(s) | 188 |
| PpsI | GAGTC | 1 cut(s) | 188 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PscI | ACATGT | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 1 cut(s) | 145 |
| RsaI | GTAC | 2 cut(s) | 78, 400 |
| RsaNI | GTAC | 2 cut(s) | 77, 399 |
| SaqAI | TTAA | 1 cut(s) | 131 |
| SatI | GCNGC | 2 cut(s) | 31, 216 |
| Sau3AI | GATC | 2 cut(s) | 382, 420 |
| SchI | GAGTC | 1 cut(s) | 188 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SfcI | CTRYAG | 2 cut(s) | 72, 311 |
| SpeI | ACTAGT | 1 cut(s) | 359 |
| Sse9I | AATT | 4 cut(s) | 12, 128, 231, 285 |
| SspMI | CTAG | 2 cut(s) | 44, 360 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 2 cut(s) | 76, 97 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TasI | AATT | 4 cut(s) | 12, 128, 231, 285 |
| TatI | WGTACW | 2 cut(s) | 76, 398 |
| Tru1I | TTAA | 1 cut(s) | 131 |
| Tru9I | TTAA | 1 cut(s) | 131 |
| TseFI | GTSAC | 2 cut(s) | 191, 203 |
| TseI | GCWGC | 2 cut(s) | 30, 215 |
| Tsp45I | GTSAC | 2 cut(s) | 191, 203 |
| TspDTI | ATGAA | 4 cut(s) | 140, 199, 320, 380 |
| XceI | RCATGY | 1 cut(s) | 260 |
| XspI | CTAG | 2 cut(s) | 44, 360 |