ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 87 | 1.1e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 298 |
| AciI | CCGC | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 204 |
| AfaI | GTAC | 1 cut(s) | 340 |
| AjnI | CCWGG | 1 cut(s) | 301 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| AoxI | GGCC | 1 cut(s) | 24 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| ApoI | RAATTY | 1 cut(s) | 204 |
| AspLEI | GCGC | 1 cut(s) | 253 |
| BanI | GGYRCC | 1 cut(s) | 298 |
| BanII | GRGCYC | 1 cut(s) | 140 |
| BbvI | GCAGC | 1 cut(s) | 100 |
| BciT130I | CCWGG | 1 cut(s) | 303 |
| BfaI | CTAG | 1 cut(s) | 261 |
| BisI | GCNGC | 2 cut(s) | 114, 154 |
| BlsI | GCNGC | 2 cut(s) | 115, 155 |
| Bme1390I | CCNGG | 1 cut(s) | 303 |
| BmiI | GGNNCC | 2 cut(s) | 139, 300 |
| BmrFI | CCNGG | 1 cut(s) | 303 |
| BoxI | GACNNNNGTC | 1 cut(s) | 107 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 80, 112 |
| BpuEI | CTTGAG | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 64, 105 |
| BseBI | CCWGG | 1 cut(s) | 303 |
| BseDI | CCNNGG | 3 cut(s) | 27, 64, 105 |
| BseGI | GGATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseXI | GCAGC | 1 cut(s) | 100 |
| Bsh1285I | CGRYCG | 1 cut(s) | 105 |
| BshFI | GGCC | 1 cut(s) | 26 |
| BshNI | GGYRCC | 1 cut(s) | 298 |
| BsiEI | CGRYCG | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 156 |
| BsnI | GGCC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| Bsp143I | GATC | 2 cut(s) | 241, 268 |
| BspACI | CCGC | 1 cut(s) | 154 |
| BspANI | GGCC | 1 cut(s) | 26 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspLI | GGNNCC | 2 cut(s) | 139, 300 |
| BspT107I | GGYRCC | 1 cut(s) | 298 |
| BssECI | CCNNGG | 3 cut(s) | 27, 64, 105 |
| BssMI | GATC | 2 cut(s) | 241, 268 |
| BssT1I | CCWWGG | 1 cut(s) | 64 |
| Bst2UI | CCWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| Bst6I | CTCTTC | 1 cut(s) | 103 |
| BstDEI | CTNAG | 2 cut(s) | 144, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 1 cut(s) | 322 |
| BstHHI | GCGC | 1 cut(s) | 253 |
| BstKTI | GATC | 2 cut(s) | 244, 271 |
| BstMBI | GATC | 2 cut(s) | 241, 268 |
| BstMCI | CGRYCG | 1 cut(s) | 105 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 38, 257 |
| BstNI | CCWGG | 1 cut(s) | 303 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 107 |
| BstSCI | CCNGG | 1 cut(s) | 301 |
| BstV1I | GCAGC | 1 cut(s) | 100 |
| BsuRI | GGCC | 1 cut(s) | 26 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 322 |
| CfoI | GCGC | 1 cut(s) | 253 |
| CsiI | ACCWGGT | 1 cut(s) | 301 |
| Csp6I | GTAC | 1 cut(s) | 339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 216, 251 |
| CviAII | CATG | 3 cut(s) | 17, 51, 128 |
| CviJI | RGCY | 8 cut(s) | 11, 26, 32, 56, 63, 138, 153, 239 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 26, 32, 56, 63, 138, 153, 239 |
| CviQI | GTAC | 1 cut(s) | 339 |
| DdeI | CTNAG | 2 cut(s) | 144, 357 |
| DpnI | GATC | 2 cut(s) | 243, 270 |
| DpnII | GATC | 2 cut(s) | 241, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 103 |
| EarI | CTCTTC | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 1 cut(s) | 64 |
| Eco24I | GRGCYC | 1 cut(s) | 140 |
| EcoRI | GAATTC | 1 cut(s) | 204 |
| EcoRII | CCWGG | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 64 |
| EcoT38I | GRGCYC | 1 cut(s) | 140 |
| ErhI | CCWWGG | 1 cut(s) | 64 |
| FaeI | CATG | 3 cut(s) | 20, 54, 131 |
| FaiI | YATR | 7 cut(s) | 18, 52, 129, 213, 327, 344, 350 |
| FatI | CATG | 3 cut(s) | 16, 50, 127 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 154 |
| FokI | GGATG | 1 cut(s) | 329 |
| FriOI | GRGCYC | 1 cut(s) | 140 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 154 |
| FspBI | CTAG | 1 cut(s) | 261 |
| GlaI | GCGC | 1 cut(s) | 252 |
| GluI | GCNGC | 2 cut(s) | 114, 154 |
| HaeIII | GGCC | 1 cut(s) | 26 |
| HhaI | GCGC | 1 cut(s) | 253 |
| Hin1II | CATG | 3 cut(s) | 20, 54, 131 |
| Hin6I | GCGC | 1 cut(s) | 251 |
| HinP1I | GCGC | 1 cut(s) | 251 |
| HincII | GTYRAC | 1 cut(s) | 48 |
| HindII | GTYRAC | 1 cut(s) | 48 |
| HinfI | GANTC | 2 cut(s) | 95, 121 |
| HpaI | GTTAAC | 1 cut(s) | 48 |
| Hpy166II | GTNNAC | 1 cut(s) | 48 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 1 cut(s) | 48 |
| HpyAV | CCTTC | 1 cut(s) | 67 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 3 cut(s) | 16, 171, 184 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 38, 257 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 357 |
| Hsp92II | CATG | 3 cut(s) | 20, 54, 131 |
| HspAI | GCGC | 1 cut(s) | 251 |
| KspAI | GTTAAC | 1 cut(s) | 48 |
| Kzo9I | GATC | 2 cut(s) | 241, 268 |
| LmnI | GCTCC | 1 cut(s) | 143 |
| LpnPI | CCDG | 4 cut(s) | 27, 288, 299, 315 |
| Lsp1109I | GCAGC | 1 cut(s) | 100 |
| MabI | ACCWGGT | 1 cut(s) | 301 |
| MaeI | CTAG | 1 cut(s) | 261 |
| MalI | GATC | 2 cut(s) | 243, 270 |
| MboI | GATC | 2 cut(s) | 241, 268 |
| MboII | GAAGA | 1 cut(s) | 90 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MluCI | AATT | 2 cut(s) | 204, 334 |
| MlyI | GAGTC | 2 cut(s) | 89, 115 |
| MmeI | TCCRAC | 1 cut(s) | 50 |
| MnlI | CCTC | 6 cut(s) | 16, 22, 70, 139, 151, 322 |
| MseI | TTAA | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MspR9I | CCNGG | 1 cut(s) | 303 |
| Mva1269I | GAATGC | 1 cut(s) | 156 |
| MvaI | CCWGG | 1 cut(s) | 303 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 38, 257 |
| NdeII | GATC | 2 cut(s) | 241, 268 |
| NlaIII | CATG | 3 cut(s) | 20, 54, 131 |
| NlaIV | GGNNCC | 2 cut(s) | 139, 300 |
| NmeAIII | GCCGAG | 1 cut(s) | 52 |
| PctI | GAATGC | 1 cut(s) | 156 |
| PkrI | GCNGC | 2 cut(s) | 115, 155 |
| PleI | GAGTC | 2 cut(s) | 89, 115 |
| PpsI | GAGTC | 2 cut(s) | 89, 115 |
| PshAI | GACNNNNGTC | 1 cut(s) | 107 |
| Psp6I | CCWGG | 1 cut(s) | 301 |
| PspGI | CCWGG | 1 cut(s) | 301 |
| PspN4I | GGNNCC | 2 cut(s) | 139, 300 |
| RsaI | GTAC | 1 cut(s) | 340 |
| RsaNI | GTAC | 1 cut(s) | 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SatI | GCNGC | 2 cut(s) | 114, 154 |
| Sau3AI | GATC | 2 cut(s) | 241, 268 |
| SchI | GAGTC | 2 cut(s) | 89, 115 |
| ScrFI | CCNGG | 1 cut(s) | 303 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SetI | ASST | 6 cut(s) | 13, 70, 81, 150, 266, 304 |
| SexAI | ACCWGGT | 1 cut(s) | 301 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| Sse9I | AATT | 2 cut(s) | 204, 334 |
| SsiI | CCGC | 1 cut(s) | 154 |
| SspMI | CTAG | 1 cut(s) | 261 |
| StyD4I | CCNGG | 1 cut(s) | 301 |
| StyI | CCWWGG | 1 cut(s) | 64 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TaqI | TCGA | 1 cut(s) | 101 |
| TasI | AATT | 2 cut(s) | 204, 334 |
| TatI | WGTACW | 1 cut(s) | 338 |
| TauI | GCSGC | 1 cut(s) | 156 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TseI | GCWGC | 1 cut(s) | 113 |
| XapI | RAATTY | 1 cut(s) | 204 |
| XspI | CTAG | 1 cut(s) | 261 |