Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcsI | RAATTY | 2 cut(s) | 337, 506 |
| AdeI | CACNNNGTG | 1 cut(s) | 723 |
| AfaI | GTAC | 2 cut(s) | 454, 648 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 230, 579, 633, 634 |
| AflIII | ACRYGT | 1 cut(s) | 208 |
| AgsI | TTSAA | 3 cut(s) | 307, 343, 595 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 671 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 2 cut(s) | 467, 518 |
| AluI | AGCT | 2 cut(s) | 467, 518 |
| Ama87I | CYCGRG | 1 cut(s) | 627 |
| AoxI | GGCC | 2 cut(s) | 297, 570 |
| ApeKI | GCWGC | 3 cut(s) | 659, 677, 704 |
| ApoI | RAATTY | 2 cut(s) | 337, 506 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 87 |
| AspS9I | GGNCC | 4 cut(s) | 235, 277, 298, 689 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AvaI | CYCGRG | 1 cut(s) | 627 |
| AvaII | GGWCC | 3 cut(s) | 235, 277, 689 |
| BanII | GRGCYC | 3 cut(s) | 143, 367, 418 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 143, 175 |
| BbvI | GCAGC | 3 cut(s) | 646, 664, 691 |
| BccI | CCATC | 1 cut(s) | 326 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BfaI | CTAG | 3 cut(s) | 117, 519, 552 |
| BisI | GCNGC | 3 cut(s) | 660, 678, 705 |
| BlsI | GCNGC | 3 cut(s) | 661, 679, 706 |
| BmcAI | AGTACT | 1 cut(s) | 648 |
| Bme1390I | CCNGG | 2 cut(s) | 282, 296 |
| Bme18I | GGWCC | 3 cut(s) | 235, 277, 689 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 671 |
| BmeT110I | CYCGRG | 1 cut(s) | 627 |
| BmgT120I | GGNCC | 4 cut(s) | 235, 277, 298, 689 |
| BmiI | GGNNCC | 7 cut(s) | 45, 140, 236, 237, 279, 300, 691 |
| BmrFI | CCNGG | 2 cut(s) | 282, 296 |
| BmsI | GCATC | 5 cut(s) | 10, 342, 592, 614, 716 |
| BpuEI | CTTGAG | 2 cut(s) | 453, 572 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| BsaJI | CCNNGG | 2 cut(s) | 280, 628 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 230, 579, 633, 634 |
| Bse118I | RCCGGY | 1 cut(s) | 568 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseDI | CCNNGG | 2 cut(s) | 280, 628 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 230, 579, 633, 634 |
| BseMII | CTCAG | 1 cut(s) | 641 |
| BseRI | GAGGAG | 1 cut(s) | 657 |
| BseXI | GCAGC | 3 cut(s) | 646, 664, 691 |
| BsgI | GTGCAG | 2 cut(s) | 231, 275 |
| BshFI | GGCC | 2 cut(s) | 299, 572 |
| BsiHKCI | CYCGRG | 1 cut(s) | 627 |
| BsiSI | CCGG | 2 cut(s) | 296, 569 |
| BslFI | GGGAC | 4 cut(s) | 248, 263, 597, 675 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 230, 579, 633, 634 |
| BsmFI | GGGAC | 4 cut(s) | 248, 263, 597, 675 |
| BsmI | GAATGC | 3 cut(s) | 87, 89, 96 |
| BsnI | GGCC | 2 cut(s) | 299, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 627 |
| Bsp1286I | GDGCHC | 3 cut(s) | 143, 367, 418 |
| Bsp143I | GATC | 1 cut(s) | 10 |
| BspANI | GGCC | 2 cut(s) | 299, 572 |
| BspCNI | CTCAG | 1 cut(s) | 642 |
| BspLI | GGNNCC | 7 cut(s) | 45, 140, 236, 237, 279, 300, 691 |
| BsrFI | RCCGGY | 1 cut(s) | 568 |
| BssAI | RCCGGY | 1 cut(s) | 568 |
| BssECI | CCNNGG | 2 cut(s) | 280, 628 |
| BssMI | GATC | 1 cut(s) | 10 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 2 cut(s) | 252, 452 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 1 cut(s) | 702 |
| BstDEI | CTNAG | 1 cut(s) | 650 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstKTI | GATC | 1 cut(s) | 13 |
| BstMBI | GATC | 1 cut(s) | 10 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 93, 683 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstNSI | RCATGY | 2 cut(s) | 212, 704 |
| BstSCI | CCNGG | 2 cut(s) | 280, 294 |
| BstV1I | GCAGC | 3 cut(s) | 646, 664, 691 |
| BsuRI | GGCC | 2 cut(s) | 299, 572 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsI | GCAGTG | 1 cut(s) | 41 |
| BtsIMutI | CAGTG | 3 cut(s) | 41, 248, 315 |
| Cac8I | GCNNGC | 1 cut(s) | 702 |
| Cfr10I | RCCGGY | 1 cut(s) | 568 |
| Cfr13I | GGNCC | 4 cut(s) | 235, 277, 298, 689 |
| CseI | GACGC | 1 cut(s) | 564 |
| Csp6I | GTAC | 2 cut(s) | 453, 647 |
| CviAII | CATG | 3 cut(s) | 74, 209, 701 |
| CviQI | GTAC | 2 cut(s) | 453, 647 |
| DdeI | CTNAG | 1 cut(s) | 650 |
| DpnI | GATC | 1 cut(s) | 12 |
| DpnII | GATC | 1 cut(s) | 10 |
| DraIII | CACNNNGTG | 1 cut(s) | 723 |
| DriI | GACNNNNNGTC | 1 cut(s) | 671 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 671 |
| Eco24I | GRGCYC | 3 cut(s) | 143, 367, 418 |
| Eco47I | GGWCC | 3 cut(s) | 235, 277, 689 |
| Eco88I | CYCGRG | 1 cut(s) | 627 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 228 |
| EcoO109I | RGGNCCY | 2 cut(s) | 235, 277 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| EcoT22I | ATGCAT | 3 cut(s) | 89, 98, 607 |
| EcoT38I | GRGCYC | 3 cut(s) | 143, 367, 418 |
| FaeI | CATG | 3 cut(s) | 77, 212, 704 |
| FaqI | GGGAC | 4 cut(s) | 248, 263, 597, 675 |
| FatI | CATG | 3 cut(s) | 73, 208, 700 |
| Fnu4HI | GCNGC | 3 cut(s) | 660, 678, 705 |
| FokI | GGATG | 1 cut(s) | 364 |
| FriOI | GRGCYC | 3 cut(s) | 143, 367, 418 |
| Fsp4HI | GCNGC | 3 cut(s) | 660, 678, 705 |
| FspBI | CTAG | 3 cut(s) | 117, 519, 552 |
| GluI | GCNGC | 3 cut(s) | 660, 678, 705 |
| HaeIII | GGCC | 2 cut(s) | 299, 572 |
| HapII | CCGG | 2 cut(s) | 296, 569 |
| HgaI | GACGC | 1 cut(s) | 564 |
| Hin1II | CATG | 3 cut(s) | 77, 212, 704 |
| HinfI | GANTC | 1 cut(s) | 585 |
| HpaII | CCGG | 2 cut(s) | 296, 569 |
| Hpy166II | GTNNAC | 1 cut(s) | 455 |
| Hpy188I | TCNGA | 2 cut(s) | 331, 513 |
| Hpy188III | TCNNGA | 2 cut(s) | 421, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 455 |
| HpyAV | CCTTC | 5 cut(s) | 34, 145, 234, 262, 268 |
| HpyCH4III | ACNGT | 2 cut(s) | 252, 452 |
| HpyCH4IV | ACGT | 2 cut(s) | 371, 597 |
| HpyCH4V | TGCA | 9 cut(s) | 80, 87, 96, 205, 248, 292, 605, 700, 707 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 93, 683 |
| HpyF3I | CTNAG | 1 cut(s) | 650 |
| HpySE526I | ACGT | 2 cut(s) | 371, 597 |
| Hsp92II | CATG | 3 cut(s) | 77, 212, 704 |
| KflI | GGGWCCC | 1 cut(s) | 235 |
| Kzo9I | GATC | 1 cut(s) | 10 |
| LmnI | GCTCC | 2 cut(s) | 49, 138 |
| Lsp1109I | GCAGC | 3 cut(s) | 646, 664, 691 |
| LweI | GCATC | 5 cut(s) | 10, 342, 592, 614, 716 |
| MaeI | CTAG | 3 cut(s) | 117, 519, 552 |
| MaeII | ACGT | 2 cut(s) | 371, 597 |
| MalI | GATC | 1 cut(s) | 12 |
| MboI | GATC | 1 cut(s) | 10 |
| MhlI | GDGCHC | 3 cut(s) | 143, 367, 418 |
| MluCI | AATT | 4 cut(s) | 15, 320, 337, 506 |
| MlyI | GAGTC | 1 cut(s) | 579 |
| MmeI | TCCRAC | 1 cut(s) | 480 |
| MnlI | CCTC | 5 cut(s) | 59, 376, 496, 623, 635 |
| Mph1103I | ATGCAT | 3 cut(s) | 89, 98, 607 |
| MroXI | GAANNNNTTC | 1 cut(s) | 87 |
| MspI | CCGG | 2 cut(s) | 296, 569 |
| MspR9I | CCNGG | 2 cut(s) | 282, 296 |
| Mva1269I | GAATGC | 3 cut(s) | 87, 89, 96 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 93, 683 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NdeII | GATC | 1 cut(s) | 10 |
| NlaIII | CATG | 3 cut(s) | 77, 212, 704 |
| NlaIV | GGNNCC | 7 cut(s) | 45, 140, 236, 237, 279, 300, 691 |
| NsiI | ATGCAT | 3 cut(s) | 89, 98, 607 |
| NspI | RCATGY | 2 cut(s) | 212, 704 |
| PaeI | GCATGC | 1 cut(s) | 704 |
| PciI | ACATGT | 1 cut(s) | 208 |
| PctI | GAATGC | 3 cut(s) | 87, 89, 96 |
| PdmI | GAANNNNTTC | 1 cut(s) | 87 |
| PkrI | GCNGC | 3 cut(s) | 661, 679, 706 |
| PleI | GAGTC | 1 cut(s) | 579 |
| PpsI | GAGTC | 1 cut(s) | 579 |
| PpuMI | RGGWCCY | 2 cut(s) | 235, 277 |
| PscI | ACATGT | 1 cut(s) | 208 |
| Psp5II | RGGWCCY | 2 cut(s) | 235, 277 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 7 cut(s) | 45, 140, 236, 237, 279, 300, 691 |
| PspPI | GGNCC | 4 cut(s) | 235, 277, 298, 689 |
| PspPPI | RGGWCCY | 2 cut(s) | 235, 277 |
| RsaI | GTAC | 2 cut(s) | 454, 648 |
| RsaNI | GTAC | 2 cut(s) | 453, 647 |
| SatI | GCNGC | 3 cut(s) | 660, 678, 705 |
| Sau3AI | GATC | 1 cut(s) | 10 |
| Sau96I | GGNCC | 4 cut(s) | 235, 277, 298, 689 |
| ScaI | AGTACT | 1 cut(s) | 648 |
| SchI | GAGTC | 1 cut(s) | 579 |
| ScrFI | CCNGG | 2 cut(s) | 282, 296 |
| SduI | GDGCHC | 3 cut(s) | 143, 367, 418 |
| SfaNI | GCATC | 5 cut(s) | 10, 342, 592, 614, 716 |
| SinI | GGWCC | 3 cut(s) | 235, 277, 689 |
| SmlI | CTYRAG | 2 cut(s) | 468, 587 |
| SmoI | CTYRAG | 2 cut(s) | 468, 587 |
| SphI | GCATGC | 1 cut(s) | 704 |
| Sse9I | AATT | 4 cut(s) | 15, 320, 337, 506 |
| SspMI | CTAG | 3 cut(s) | 117, 519, 552 |
| StyD4I | CCNGG | 2 cut(s) | 280, 294 |
| TaaI | ACNGT | 2 cut(s) | 252, 452 |
| TaiI | ACGT | 2 cut(s) | 374, 600 |
| TasI | AATT | 4 cut(s) | 15, 320, 337, 506 |
| TatI | WGTACW | 1 cut(s) | 646 |
| TscAI | CASTG | 3 cut(s) | 41, 255, 322 |
| TseI | GCWGC | 3 cut(s) | 659, 677, 704 |
| TspDTI | ATGAA | 1 cut(s) | 216 |
| TspRI | CASTG | 3 cut(s) | 41, 255, 322 |
| VpaK11BI | GGWCC | 3 cut(s) | 235, 277, 689 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 228 |
| XapI | RAATTY | 2 cut(s) | 337, 506 |
| XceI | RCATGY | 2 cut(s) | 212, 704 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 629 |
| XmnI | GAANNNNTTC | 1 cut(s) | 87 |
| XspI | CTAG | 3 cut(s) | 117, 519, 552 |
| ZrmI | AGTACT | 1 cut(s) | 648 |
| Zsp2I | ATGCAT | 3 cut(s) | 89, 98, 607 |