Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 107 - 219 | 1.2e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 357 |
| AclWI | GGATC | 1 cut(s) | 603 |
| AcsI | RAATTY | 3 cut(s) | 138, 276, 565 |
| AcuI | CTGAAG | 1 cut(s) | 168 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 18, 302, 347 |
| AflIII | ACRYGT | 1 cut(s) | 442 |
| AgsI | TTSAA | 5 cut(s) | 76, 283, 313, 431, 449 |
| AluBI | AGCT | 4 cut(s) | 188, 332, 559, 660 |
| AluI | AGCT | 4 cut(s) | 188, 332, 559, 660 |
| Alw26I | GTCTC | 1 cut(s) | 509 |
| AlwI | GGATC | 1 cut(s) | 603 |
| AoxI | GGCC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 1 cut(s) | 559 |
| ApoI | RAATTY | 3 cut(s) | 138, 276, 565 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 16, 48, 508, 540 |
| AsuHPI | GGTGA | 3 cut(s) | 328, 430, 544 |
| AsuNHI | GCTAGC | 1 cut(s) | 656 |
| BbvI | GCAGC | 1 cut(s) | 546 |
| BccI | CCATC | 1 cut(s) | 409 |
| BclI | TGATCA | 2 cut(s) | 49, 112 |
| BcoDI | GTCTC | 1 cut(s) | 509 |
| BfaI | CTAG | 5 cut(s) | 270, 302, 605, 645, 657 |
| BfmI | CTRYAG | 1 cut(s) | 560 |
| BisI | GCNGC | 2 cut(s) | 357, 560 |
| BlsI | GCNGC | 2 cut(s) | 358, 561 |
| BmsI | GCATC | 4 cut(s) | 49, 218, 604, 631 |
| BmtI | GCTAGC | 1 cut(s) | 660 |
| BsaBI | GATNNNNATC | 1 cut(s) | 48 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 18, 302, 347 |
| Bse3DI | GCAATG | 2 cut(s) | 453, 477 |
| Bse8I | GATNNNNATC | 1 cut(s) | 48 |
| BseGI | GGATG | 2 cut(s) | 64, 396 |
| BseJI | GATNNNNATC | 1 cut(s) | 48 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 18, 302, 347 |
| BseMI | GCAATG | 2 cut(s) | 453, 477 |
| BseMII | CTCAG | 3 cut(s) | 212, 398, 613 |
| BseRI | GAGGAG | 2 cut(s) | 288, 569 |
| BseXI | GCAGC | 1 cut(s) | 546 |
| BshFI | GGCC | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 18, 302, 347 |
| BsmAI | GTCTC | 1 cut(s) | 509 |
| BsnI | GGCC | 1 cut(s) | 356 |
| Bsp143I | GATC | 3 cut(s) | 49, 112, 595 |
| BspACI | CCGC | 1 cut(s) | 357 |
| BspANI | GGCC | 1 cut(s) | 356 |
| BspCNI | CTCAG | 3 cut(s) | 213, 397, 612 |
| BspMAI | CTGCAG | 1 cut(s) | 564 |
| BspOI | GCTAGC | 1 cut(s) | 660 |
| BspPI | GGATC | 1 cut(s) | 603 |
| BsrDI | GCAATG | 2 cut(s) | 453, 477 |
| BssMI | GATC | 3 cut(s) | 49, 112, 595 |
| Bst4CI | ACNGT | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 1 cut(s) | 658 |
| BstDEI | CTNAG | 4 cut(s) | 35, 221, 384, 599 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 300 |
| BstF5I | GGATG | 2 cut(s) | 64, 396 |
| BstKTI | GATC | 3 cut(s) | 52, 115, 598 |
| BstMAI | GTCTC | 1 cut(s) | 509 |
| BstMBI | GATC | 3 cut(s) | 49, 112, 595 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstSFI | CTRYAG | 1 cut(s) | 560 |
| BstV1I | GCAGC | 1 cut(s) | 546 |
| BstX2I | RGATCY | 1 cut(s) | 595 |
| BstYI | RGATCY | 1 cut(s) | 595 |
| BsuRI | GGCC | 1 cut(s) | 356 |
| BtsCI | GGATG | 2 cut(s) | 64, 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 1 cut(s) | 658 |
| CviAII | CATG | 5 cut(s) | 205, 263, 443, 491, 641 |
| CviJI | RGCY | 9 cut(s) | 188, 250, 269, 332, 356, 496, 559, 656, 660 |
| CviKI_1 | RGCY | 9 cut(s) | 188, 250, 269, 332, 356, 496, 559, 656, 660 |
| DdeI | CTNAG | 4 cut(s) | 35, 221, 384, 599 |
| DpnI | GATC | 3 cut(s) | 51, 114, 597 |
| DpnII | GATC | 3 cut(s) | 49, 112, 595 |
| Eco32I | GATATC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 1 cut(s) | 168 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 300 |
| EcoRI | GAATTC | 1 cut(s) | 565 |
| EcoRV | GATATC | 1 cut(s) | 196 |
| FaeI | CATG | 5 cut(s) | 208, 266, 446, 494, 644 |
| FaiI | YATR | 9 cut(s) | 206, 264, 444, 480, 492, 506, 589, 591, 642 |
| FatI | CATG | 5 cut(s) | 204, 262, 442, 490, 640 |
| FbaI | TGATCA | 2 cut(s) | 49, 112 |
| Fnu4HI | GCNGC | 2 cut(s) | 357, 560 |
| FokI | GGATG | 2 cut(s) | 71, 403 |
| Fsp4HI | GCNGC | 2 cut(s) | 357, 560 |
| FspBI | CTAG | 5 cut(s) | 270, 302, 605, 645, 657 |
| GluI | GCNGC | 2 cut(s) | 357, 560 |
| HaeIII | GGCC | 1 cut(s) | 356 |
| Hin1II | CATG | 5 cut(s) | 208, 266, 446, 494, 644 |
| HinfI | GANTC | 4 cut(s) | 44, 76, 366, 380 |
| HphI | GGTGA | 3 cut(s) | 328, 430, 544 |
| Hpy188I | TCNGA | 4 cut(s) | 49, 218, 602, 633 |
| Hpy188III | TCNNGA | 2 cut(s) | 370, 551 |
| HpyAV | CCTTC | 3 cut(s) | 307, 576, 642 |
| HpyCH4III | ACNGT | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 2 cut(s) | 562, 617 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 4 cut(s) | 35, 221, 384, 599 |
| Hsp92II | CATG | 5 cut(s) | 208, 266, 446, 494, 644 |
| Ksp22I | TGATCA | 2 cut(s) | 49, 112 |
| Kzo9I | GATC | 3 cut(s) | 49, 112, 595 |
| LmnI | GCTCC | 3 cut(s) | 329, 401, 556 |
| LpnPI | CCDG | 5 cut(s) | 72, 333, 354, 371, 603 |
| Lsp1109I | GCAGC | 1 cut(s) | 546 |
| LweI | GCATC | 4 cut(s) | 49, 218, 604, 631 |
| MaeI | CTAG | 5 cut(s) | 270, 302, 605, 645, 657 |
| MaeIII | GTNAC | 1 cut(s) | 418 |
| MalI | GATC | 3 cut(s) | 51, 114, 597 |
| MboI | GATC | 3 cut(s) | 49, 112, 595 |
| MboII | GAAGA | 2 cut(s) | 424, 561 |
| MfeI | CAATTG | 1 cut(s) | 542 |
| MflI | RGATCY | 1 cut(s) | 595 |
| MluCI | AATT | 6 cut(s) | 28, 138, 226, 276, 542, 565 |
| MmeI | TCCRAC | 1 cut(s) | 492 |
| MnlI | CCTC | 6 cut(s) | 306, 309, 460, 547, 586, 646 |
| MslI | CAYNNNNRTG | 1 cut(s) | 57 |
| MunI | CAATTG | 1 cut(s) | 542 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NdeII | GATC | 3 cut(s) | 49, 112, 595 |
| NheI | GCTAGC | 1 cut(s) | 656 |
| NlaIII | CATG | 5 cut(s) | 208, 266, 446, 494, 644 |
| NmuCI | GTSAC | 1 cut(s) | 418 |
| NspI | RCATGY | 1 cut(s) | 446 |
| PciI | ACATGT | 1 cut(s) | 442 |
| PfeI | GAWTC | 4 cut(s) | 44, 76, 366, 380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 18 |
| PkrI | GCNGC | 2 cut(s) | 358, 561 |
| PscI | ACATGT | 1 cut(s) | 442 |
| PstI | CTGCAG | 1 cut(s) | 564 |
| PsuI | RGATCY | 1 cut(s) | 595 |
| RseI | CAYNNNNRTG | 1 cut(s) | 57 |
| SatI | GCNGC | 2 cut(s) | 357, 560 |
| Sau3AI | GATC | 3 cut(s) | 49, 112, 595 |
| SetI | ASST | 7 cut(s) | 190, 307, 318, 334, 561, 587, 662 |
| SfaNI | GCATC | 4 cut(s) | 49, 218, 604, 631 |
| SfcI | CTRYAG | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 57 |
| Sse9I | AATT | 6 cut(s) | 28, 138, 226, 276, 542, 565 |
| SsiI | CCGC | 1 cut(s) | 357 |
| SspI | AATATT | 1 cut(s) | 322 |
| SspMI | CTAG | 5 cut(s) | 270, 302, 605, 645, 657 |
| TaaI | ACNGT | 1 cut(s) | 106 |
| TasI | AATT | 6 cut(s) | 28, 138, 226, 276, 542, 565 |
| TauI | GCSGC | 1 cut(s) | 359 |
| TfiI | GAWTC | 4 cut(s) | 44, 76, 366, 380 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 418 |
| TseI | GCWGC | 1 cut(s) | 559 |
| Tsp45I | GTSAC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 2 cut(s) | 220, 629 |
| TspGWI | ACGGA | 1 cut(s) | 342 |
| TspRI | CASTG | 1 cut(s) | 111 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 18 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 300 |
| XapI | RAATTY | 3 cut(s) | 138, 276, 565 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XspI | CTAG | 5 cut(s) | 270, 302, 605, 645, 657 |