Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 28 - 66 | 4.4e-12 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 76 - 151 | 6.1e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 156 - 222 | 9.7e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 168 - 227 | 1.7e-09 | Leucine rich repeat |
| LRR_14 | PF23598 | 212 - 324 | 7.8e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 367 - 468 | 6.1e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 743 |
| Acc16I | TGCGCA | 1 cut(s) | 356 |
| Acc36I | ACCTGC | 1 cut(s) | 240 |
| AccB1I | GGYRCC | 1 cut(s) | 491 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 272, 344 |
| AccI | GTMKAC | 1 cut(s) | 202 |
| AciI | CCGC | 2 cut(s) | 349, 1428 |
| AclWI | GGATC | 2 cut(s) | 96, 125 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcsI | RAATTY | 9 cut(s) | 277, 402, 474, 800, 925, 1218, 1309, 1525, 1578 |
| AcuI | CTGAAG | 3 cut(s) | 304, 629, 1226 |
| AfaI | GTAC | 3 cut(s) | 1432, 1544, 1620 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 272, 344 |
| AflIII | ACRYGT | 2 cut(s) | 268, 1563 |
| AgsI | TTSAA | 8 cut(s) | 107, 390, 581, 849, 881, 922, 1117, 1256 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 235 |
| AjnI | CCWGG | 1 cut(s) | 116 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1044, 1076 |
| Alw21I | GWGCWC | 1 cut(s) | 489 |
| Alw26I | GTCTC | 1 cut(s) | 77 |
| AlwI | GGATC | 2 cut(s) | 96, 125 |
| Ama87I | CYCGRG | 1 cut(s) | 953 |
| AoxI | GGCC | 4 cut(s) | 96, 114, 346, 1183 |
| ApeKI | GCWGC | 3 cut(s) | 26, 373, 376 |
| ApoI | RAATTY | 9 cut(s) | 277, 402, 474, 800, 925, 1218, 1309, 1525, 1578 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1277 |
| AspA2I | CCTAGG | 1 cut(s) | 775 |
| AspLEI | GCGC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 2 cut(s) | 229, 833 |
| AsuHPI | GGTGA | 4 cut(s) | 140, 255, 1001, 1586 |
| AsuII | TTCGAA | 1 cut(s) | 599 |
| AvaI | CYCGRG | 1 cut(s) | 953 |
| AvaII | GGWCC | 2 cut(s) | 229, 833 |
| AvrII | CCTAGG | 1 cut(s) | 775 |
| AxyI | CCTNAGG | 1 cut(s) | 480 |
| BanI | GGYRCC | 1 cut(s) | 491 |
| BanII | GRGCYC | 2 cut(s) | 145, 489 |
| BauI | CACGAG | 1 cut(s) | 220 |
| BbsI | GAAGAC | 1 cut(s) | 675 |
| Bbv12I | GWGCWC | 1 cut(s) | 489 |
| BbvI | GCAGC | 3 cut(s) | 13, 363, 385 |
| BccI | CCATC | 2 cut(s) | 1334, 1671 |
| BciT130I | CCWGG | 1 cut(s) | 118 |
| BciVI | GTATCC | 1 cut(s) | 1373 |
| BcoDI | GTCTC | 1 cut(s) | 77 |
| BfaI | CTAG | 3 cut(s) | 776, 869, 1376 |
| BfmI | CTRYAG | 2 cut(s) | 233, 377 |
| BfuAI | ACCTGC | 1 cut(s) | 240 |
| BfuI | GTATCC | 1 cut(s) | 1373 |
| BisI | GCNGC | 4 cut(s) | 27, 349, 374, 377 |
| BlnI | CCTAGG | 1 cut(s) | 775 |
| BlsI | GCNGC | 4 cut(s) | 28, 350, 375, 378 |
| BmcAI | AGTACT | 1 cut(s) | 1544 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| Bme18I | GGWCC | 2 cut(s) | 229, 833 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 235 |
| BmeT110I | CYCGRG | 1 cut(s) | 953 |
| BmgT120I | GGNCC | 2 cut(s) | 229, 833 |
| BmiI | GGNNCC | 4 cut(s) | 142, 256, 493, 1504 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BpiI | GAAGAC | 1 cut(s) | 675 |
| BpmI | CTGGAG | 2 cut(s) | 321, 1559 |
| Bpu14I | TTCGAA | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 2 cut(s) | 959, 1015 |
| BsaAI | YACGTR | 1 cut(s) | 1618 |
| BsaJI | CCNNGG | 3 cut(s) | 754, 775, 1646 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 272, 344 |
| Bse1I | ACTGG | 4 cut(s) | 99, 130, 178, 1504 |
| Bse21I | CCTNAGG | 1 cut(s) | 480 |
| Bse3DI | GCAATG | 1 cut(s) | 1083 |
| BseBI | CCWGG | 1 cut(s) | 118 |
| BseDI | CCNNGG | 3 cut(s) | 754, 775, 1646 |
| BseGI | GGATG | 3 cut(s) | 690, 1397, 1555 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 272, 344 |
| BseMI | GCAATG | 1 cut(s) | 1083 |
| BseMII | CTCAG | 4 cut(s) | 62, 471, 783, 1438 |
| BseNI | ACTGG | 4 cut(s) | 99, 130, 178, 1504 |
| BseRI | GAGGAG | 1 cut(s) | 497 |
| BseXI | GCAGC | 3 cut(s) | 13, 363, 385 |
| BshFI | GGCC | 4 cut(s) | 98, 116, 348, 1185 |
| BshNI | GGYRCC | 1 cut(s) | 491 |
| BsiHKAI | GWGCWC | 1 cut(s) | 489 |
| BsiHKCI | CYCGRG | 1 cut(s) | 953 |
| BsiSI | CCGG | 1 cut(s) | 1583 |
| BslFI | GGGAC | 2 cut(s) | 772, 1664 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 272, 344 |
| BsmAI | GTCTC | 1 cut(s) | 77 |
| BsmBI | CGTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 2 cut(s) | 772, 1664 |
| BsmI | GAATGC | 1 cut(s) | 1146 |
| BsnI | GGCC | 4 cut(s) | 98, 116, 348, 1185 |
| BsoBI | CYCGRG | 1 cut(s) | 953 |
| Bsp119I | TTCGAA | 1 cut(s) | 599 |
| Bsp1286I | GDGCHC | 2 cut(s) | 145, 489 |
| Bsp143I | GATC | 3 cut(s) | 88, 130, 702 |
| BspACI | CCGC | 2 cut(s) | 349, 1428 |
| BspANI | GGCC | 4 cut(s) | 98, 116, 348, 1185 |
| BspCNI | CTCAG | 4 cut(s) | 63, 472, 782, 1437 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspLI | GGNNCC | 4 cut(s) | 142, 256, 493, 1504 |
| BspMAI | CTGCAG | 2 cut(s) | 237, 381 |
| BspMI | ACCTGC | 1 cut(s) | 240 |
| BspPI | GGATC | 2 cut(s) | 96, 125 |
| BspQI | GCTCTTC | 1 cut(s) | 792 |
| BspT104I | TTCGAA | 1 cut(s) | 599 |
| BspT107I | GGYRCC | 1 cut(s) | 491 |
| BsrDI | GCAATG | 1 cut(s) | 1083 |
| BsrI | ACTGG | 4 cut(s) | 99, 130, 178, 1504 |
| BssECI | CCNNGG | 3 cut(s) | 754, 775, 1646 |
| BssMI | GATC | 3 cut(s) | 88, 130, 702 |
| BssSI | CACGAG | 1 cut(s) | 220 |
| BssT1I | CCWWGG | 3 cut(s) | 754, 775, 1646 |
| Bst2BI | CACGAG | 1 cut(s) | 220 |
| Bst2UI | CCWGG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 2 cut(s) | 727, 1041 |
| Bst6I | CTCTTC | 1 cut(s) | 792 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 241, 370 |
| BstBAI | YACGTR | 1 cut(s) | 1618 |
| BstBI | TTCGAA | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 1 cut(s) | 353 |
| BstDEI | CTNAG | 5 cut(s) | 71, 480, 650, 769, 1424 |
| BstF5I | GGATG | 3 cut(s) | 690, 1397, 1555 |
| BstHHI | GCGC | 1 cut(s) | 357 |
| BstKTI | GATC | 3 cut(s) | 91, 133, 705 |
| BstMAI | GTCTC | 1 cut(s) | 77 |
| BstMBI | GATC | 3 cut(s) | 88, 130, 702 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 241, 354, 361, 370 |
| BstNI | CCWGG | 1 cut(s) | 118 |
| BstNSI | RCATGY | 4 cut(s) | 272, 1567, 1631, 1657 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSFI | CTRYAG | 2 cut(s) | 233, 377 |
| BstSNI | TACGTA | 1 cut(s) | 1618 |
| BstV1I | GCAGC | 3 cut(s) | 13, 363, 385 |
| BstV2I | GAAGAC | 1 cut(s) | 675 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 185, 830, 902 |
| Bsu36I | CCTNAGG | 1 cut(s) | 480 |
| BsuI | GTATCC | 1 cut(s) | 1373 |
| BsuRI | GGCC | 4 cut(s) | 98, 116, 348, 1185 |
| BtsCI | GGATG | 3 cut(s) | 690, 1397, 1555 |
| BtsIMutI | CAGTG | 2 cut(s) | 185, 1497 |
| BveI | ACCTGC | 1 cut(s) | 240 |
| Cac8I | GCNNGC | 1 cut(s) | 353 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| CfoI | GCGC | 1 cut(s) | 357 |
| Cfr13I | GGNCC | 2 cut(s) | 229, 833 |
| Csp6I | GTAC | 3 cut(s) | 1431, 1543, 1619 |
| CviAII | CATG | 9 cut(s) | 153, 269, 326, 932, 1355, 1388, 1564, 1628, 1654 |
| CviQI | GTAC | 3 cut(s) | 1431, 1543, 1619 |
| DdeI | CTNAG | 5 cut(s) | 71, 480, 650, 769, 1424 |
| DpnI | GATC | 3 cut(s) | 90, 132, 704 |
| DpnII | GATC | 3 cut(s) | 88, 130, 702 |
| DriI | GACNNNNNGTC | 1 cut(s) | 235 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| Eam1104I | CTCTTC | 1 cut(s) | 792 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 235 |
| EarI | CTCTTC | 1 cut(s) | 792 |
| Ecl136II | GAGCTC | 1 cut(s) | 487 |
| Eco105I | TACGTA | 1 cut(s) | 1618 |
| Eco130I | CCWWGG | 3 cut(s) | 754, 775, 1646 |
| Eco147I | AGGCCT | 1 cut(s) | 1185 |
| Eco24I | GRGCYC | 2 cut(s) | 145, 489 |
| Eco47I | GGWCC | 2 cut(s) | 229, 833 |
| Eco53kI | GAGCTC | 1 cut(s) | 487 |
| Eco57I | CTGAAG | 3 cut(s) | 304, 629, 1226 |
| Eco81I | CCTNAGG | 1 cut(s) | 480 |
| Eco88I | CYCGRG | 1 cut(s) | 953 |
| EcoICRI | GAGCTC | 1 cut(s) | 487 |
| EcoRI | GAATTC | 1 cut(s) | 474 |
| EcoRII | CCWGG | 1 cut(s) | 116 |
| EcoT14I | CCWWGG | 3 cut(s) | 754, 775, 1646 |
| EcoT22I | ATGCAT | 1 cut(s) | 1085 |
| EcoT38I | GRGCYC | 2 cut(s) | 145, 489 |
| ErhI | CCWWGG | 3 cut(s) | 754, 775, 1646 |
| Esp3I | CGTCTC | 1 cut(s) | 77 |
| FaeI | CATG | 9 cut(s) | 156, 272, 329, 935, 1358, 1391, 1567, 1631, 1657 |
| FaqI | GGGAC | 2 cut(s) | 772, 1664 |
| FatI | CATG | 9 cut(s) | 152, 268, 325, 931, 1354, 1387, 1563, 1627, 1653 |
| FblI | GTMKAC | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 4 cut(s) | 27, 349, 374, 377 |
| FokI | GGATG | 3 cut(s) | 677, 1384, 1562 |
| FriOI | GRGCYC | 2 cut(s) | 145, 489 |
| Fsp4HI | GCNGC | 4 cut(s) | 27, 349, 374, 377 |
| FspBI | CTAG | 3 cut(s) | 776, 869, 1376 |
| FspI | TGCGCA | 1 cut(s) | 356 |
| GlaI | GCGC | 1 cut(s) | 356 |
| GluI | GCNGC | 4 cut(s) | 27, 349, 374, 377 |
| GsuI | CTGGAG | 2 cut(s) | 321, 1559 |
| HaeIII | GGCC | 4 cut(s) | 98, 116, 348, 1185 |
| HapII | CCGG | 1 cut(s) | 1583 |
| HhaI | GCGC | 1 cut(s) | 357 |
| Hin1II | CATG | 9 cut(s) | 156, 272, 329, 935, 1358, 1391, 1567, 1631, 1657 |
| Hin6I | GCGC | 1 cut(s) | 355 |
| HinP1I | GCGC | 1 cut(s) | 355 |
| HincII | GTYRAC | 2 cut(s) | 638, 1174 |
| HindII | GTYRAC | 2 cut(s) | 638, 1174 |
| HindIII | AAGCTT | 2 cut(s) | 1238, 1349 |
| HinfI | GANTC | 1 cut(s) | 161 |
| HpaI | GTTAAC | 1 cut(s) | 1174 |
| HpaII | CCGG | 1 cut(s) | 1583 |
| HphI | GGTGA | 4 cut(s) | 140, 255, 1001, 1586 |
| Hpy166II | GTNNAC | 5 cut(s) | 169, 203, 638, 833, 1174 |
| Hpy188I | TCNGA | 5 cut(s) | 609, 772, 1228, 1245, 1416 |
| Hpy8I | GTNNAC | 5 cut(s) | 169, 203, 638, 833, 1174 |
| HpyAV | CCTTC | 7 cut(s) | 417, 604, 727, 887, 924, 1305, 1517 |
| HpyCH4III | ACNGT | 2 cut(s) | 727, 1041 |
| HpyCH4IV | ACGT | 1 cut(s) | 1617 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 241, 354, 361, 370 |
| HpyF3I | CTNAG | 5 cut(s) | 71, 480, 650, 769, 1424 |
| HpySE526I | ACGT | 1 cut(s) | 1617 |
| Hsp92II | CATG | 9 cut(s) | 156, 272, 329, 935, 1358, 1391, 1567, 1631, 1657 |
| HspAI | GCGC | 1 cut(s) | 355 |
| KspAI | GTTAAC | 1 cut(s) | 1174 |
| Kzo9I | GATC | 3 cut(s) | 88, 130, 702 |
| LguI | GCTCTTC | 1 cut(s) | 792 |
| LmnI | GCTCC | 3 cut(s) | 140, 260, 484 |
| Lsp1109I | GCAGC | 3 cut(s) | 13, 363, 385 |
| MaeI | CTAG | 3 cut(s) | 776, 869, 1376 |
| MaeII | ACGT | 1 cut(s) | 1617 |
| MaeIII | GTNAC | 6 cut(s) | 190, 217, 436, 452, 989, 1316 |
| MalI | GATC | 3 cut(s) | 90, 132, 704 |
| MboI | GATC | 3 cut(s) | 88, 130, 702 |
| MboII | GAAGA | 8 cut(s) | 296, 483, 564, 588, 680, 779, 1089, 1634 |
| MhlI | GDGCHC | 2 cut(s) | 145, 489 |
| MmeI | TCCRAC | 2 cut(s) | 207, 253 |
| Mph1103I | ATGCAT | 1 cut(s) | 1085 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1277 |
| MseI | TTAA | 5 cut(s) | 708, 947, 1173, 1259, 1313 |
| MspA1I | CMGCKG | 3 cut(s) | 26, 376, 1428 |
| MspI | CCGG | 1 cut(s) | 1583 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| Mva1269I | GAATGC | 1 cut(s) | 1146 |
| MvaI | CCWGG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 241, 354, 361, 370 |
| NdeII | GATC | 3 cut(s) | 88, 130, 702 |
| NlaIII | CATG | 9 cut(s) | 156, 272, 329, 935, 1358, 1391, 1567, 1631, 1657 |
| NlaIV | GGNNCC | 4 cut(s) | 142, 256, 493, 1504 |
| NmeAIII | GCCGAG | 1 cut(s) | 468 |
| NmuCI | GTSAC | 2 cut(s) | 217, 989 |
| NsbI | TGCGCA | 1 cut(s) | 356 |
| NsiI | ATGCAT | 1 cut(s) | 1085 |
| NspI | RCATGY | 4 cut(s) | 272, 1567, 1631, 1657 |
| NspV | TTCGAA | 1 cut(s) | 599 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PceI | AGGCCT | 1 cut(s) | 1185 |
| PciI | ACATGT | 2 cut(s) | 268, 1563 |
| PciSI | GCTCTTC | 1 cut(s) | 792 |
| PctI | GAATGC | 1 cut(s) | 1146 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1277 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 272, 344 |
| PkrI | GCNGC | 4 cut(s) | 28, 350, 375, 378 |
| Ppu21I | YACGTR | 1 cut(s) | 1618 |
| PscI | ACATGT | 2 cut(s) | 268, 1563 |
| PsiI | TTATAA | 1 cut(s) | 743 |
| Psp124BI | GAGCTC | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 116 |
| PspGI | CCWGG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 4 cut(s) | 142, 256, 493, 1504 |
| PspPI | GGNCC | 2 cut(s) | 229, 833 |
| PstI | CTGCAG | 2 cut(s) | 237, 381 |
| PvuII | CAGCTG | 2 cut(s) | 26, 376 |
| RsaI | GTAC | 3 cut(s) | 1432, 1544, 1620 |
| RsaNI | GTAC | 3 cut(s) | 1431, 1543, 1619 |
| SacI | GAGCTC | 1 cut(s) | 489 |
| SapI | GCTCTTC | 1 cut(s) | 792 |
| SaqAI | TTAA | 5 cut(s) | 708, 947, 1173, 1259, 1313 |
| SatI | GCNGC | 4 cut(s) | 27, 349, 374, 377 |
| Sau3AI | GATC | 3 cut(s) | 88, 130, 702 |
| Sau96I | GGNCC | 2 cut(s) | 229, 833 |
| ScaI | AGTACT | 1 cut(s) | 1544 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SduI | GDGCHC | 2 cut(s) | 145, 489 |
| SfcI | CTRYAG | 2 cut(s) | 233, 377 |
| SfuI | TTCGAA | 1 cut(s) | 599 |
| SinI | GGWCC | 2 cut(s) | 229, 833 |
| SmlI | CTYRAG | 2 cut(s) | 938, 994 |
| SmoI | CTYRAG | 2 cut(s) | 938, 994 |
| SnaBI | TACGTA | 1 cut(s) | 1618 |
| SseBI | AGGCCT | 1 cut(s) | 1185 |
| SsiI | CCGC | 2 cut(s) | 349, 1428 |
| SspI | AATATT | 1 cut(s) | 1291 |
| SspMI | CTAG | 3 cut(s) | 776, 869, 1376 |
| SstI | GAGCTC | 1 cut(s) | 489 |
| StuI | AGGCCT | 1 cut(s) | 1185 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| StyI | CCWWGG | 3 cut(s) | 754, 775, 1646 |
| TaaI | ACNGT | 2 cut(s) | 727, 1041 |
| TaiI | ACGT | 1 cut(s) | 1620 |
| TaqI | TCGA | 6 cut(s) | 91, 599, 666, 701, 798, 1408 |
| TatI | WGTACW | 1 cut(s) | 1542 |
| TauI | GCSGC | 1 cut(s) | 351 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| Tru1I | TTAA | 5 cut(s) | 708, 947, 1173, 1259, 1313 |
| Tru9I | TTAA | 5 cut(s) | 708, 947, 1173, 1259, 1313 |
| TscAI | CASTG | 2 cut(s) | 185, 1504 |
| TseFI | GTSAC | 2 cut(s) | 217, 989 |
| TseI | GCWGC | 3 cut(s) | 26, 373, 376 |
| Tsp45I | GTSAC | 2 cut(s) | 217, 989 |
| TspDTI | ATGAA | 8 cut(s) | 7, 141, 342, 414, 948, 1050, 1286, 1343 |
| TspGWI | ACGGA | 1 cut(s) | 101 |
| TspRI | CASTG | 2 cut(s) | 185, 1504 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 272, 344 |
| VpaK11BI | GGWCC | 2 cut(s) | 229, 833 |
| XapI | RAATTY | 9 cut(s) | 277, 402, 474, 800, 925, 1218, 1309, 1525, 1578 |
| XceI | RCATGY | 4 cut(s) | 272, 1567, 1631, 1657 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1448 |
| XmaJI | CCTAGG | 1 cut(s) | 775 |
| XmiI | GTMKAC | 1 cut(s) | 202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1277 |
| XspI | CTAG | 3 cut(s) | 776, 869, 1376 |
| ZrmI | AGTACT | 1 cut(s) | 1544 |
| Zsp2I | ATGCAT | 1 cut(s) | 1085 |