ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 966 |
| AccBSI | CCGCTC | 2 cut(s) | 316, 1294 |
| AccI | GTMKAC | 1 cut(s) | 533 |
| AccIII | TCCGGA | 1 cut(s) | 445 |
| AciI | CCGC | 6 cut(s) | 176, 305, 316, 638, 1294, 1394 |
| AclWI | GGATC | 3 cut(s) | 620, 711, 1168 |
| AcsI | RAATTY | 5 cut(s) | 321, 740, 883, 996, 1336 |
| AcuI | CTGAAG | 2 cut(s) | 536, 1190 |
| AcyI | GRCGYC | 1 cut(s) | 785 |
| AdeI | CACNNNGTG | 1 cut(s) | 331 |
| AfaI | GTAC | 4 cut(s) | 9, 65, 438, 1114 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 150, 966, 1109, 1183, 1198, 1264, 1393 |
| AflIII | ACRYGT | 1 cut(s) | 1057 |
| AgeI | ACCGGT | 1 cut(s) | 1257 |
| AgsI | TTSAA | 5 cut(s) | 400, 472, 694, 740, 915 |
| AhlI | ACTAGT | 1 cut(s) | 823 |
| AjnI | CCWGG | 2 cut(s) | 588, 763 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 133, 165 |
| AluBI | AGCT | 6 cut(s) | 90, 107, 200, 416, 514, 974 |
| AluI | AGCT | 6 cut(s) | 90, 107, 200, 416, 514, 974 |
| Alw21I | GWGCWC | 1 cut(s) | 1191 |
| Alw26I | GTCTC | 2 cut(s) | 1003, 1324 |
| AlwI | GGATC | 3 cut(s) | 620, 711, 1168 |
| Ama87I | CYCGRG | 2 cut(s) | 144, 1356 |
| Aor13HI | TCCGGA | 1 cut(s) | 445 |
| AoxI | GGCC | 6 cut(s) | 70, 957, 1042, 1162, 1278, 1287 |
| ApeKI | GCWGC | 1 cut(s) | 1414 |
| ApoI | RAATTY | 5 cut(s) | 321, 740, 883, 996, 1336 |
| AsiGI | ACCGGT | 1 cut(s) | 1257 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 236, 910 |
| AspS9I | GGNCC | 5 cut(s) | 957, 1042, 1163, 1278, 1287 |
| AsuC2I | CCSGG | 2 cut(s) | 145, 146 |
| AsuHPI | GGTGA | 7 cut(s) | 311, 608, 657, 779, 1003, 1054, 1376 |
| AsuII | TTCGAA | 1 cut(s) | 240 |
| AvaI | CYCGRG | 2 cut(s) | 144, 1356 |
| BbsI | GAAGAC | 2 cut(s) | 167, 388 |
| Bbv12I | GWGCWC | 1 cut(s) | 1191 |
| BbvI | GCAGC | 1 cut(s) | 1401 |
| BccI | CCATC | 4 cut(s) | 274, 593, 775, 1289 |
| BceAI | ACGGC | 1 cut(s) | 1402 |
| BciT130I | CCWGG | 2 cut(s) | 590, 765 |
| BclI | TGATCA | 1 cut(s) | 192 |
| BcnI | CCSGG | 2 cut(s) | 145, 146 |
| BcoDI | GTCTC | 2 cut(s) | 1003, 1324 |
| BcuI | ACTAGT | 1 cut(s) | 823 |
| BfaI | CTAG | 7 cut(s) | 285, 404, 413, 824, 975, 1182, 1436 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1286 |
| BisI | GCNGC | 2 cut(s) | 638, 1415 |
| BlpI | GCTNAGC | 1 cut(s) | 510 |
| BlsI | GCNGC | 2 cut(s) | 639, 1416 |
| Bme1390I | CCNGG | 4 cut(s) | 145, 146, 590, 765 |
| BmeT110I | CYCGRG | 2 cut(s) | 144, 1356 |
| BmgT120I | GGNCC | 5 cut(s) | 957, 1042, 1163, 1278, 1287 |
| BmiI | GGNNCC | 1 cut(s) | 1165 |
| BmrFI | CCNGG | 4 cut(s) | 145, 146, 590, 765 |
| BmrI | ACTGGG | 2 cut(s) | 337, 639 |
| BmsI | GCATC | 3 cut(s) | 258, 624, 841 |
| BmuI | ACTGGG | 2 cut(s) | 337, 639 |
| BpiI | GAAGAC | 2 cut(s) | 167, 388 |
| BpmI | CTGGAG | 2 cut(s) | 747, 1031 |
| Bpu10I | CCTNAGC | 2 cut(s) | 207, 723 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 510 |
| Bpu14I | TTCGAA | 1 cut(s) | 240 |
| BpuMI | CCSGG | 2 cut(s) | 145, 146 |
| BsaAI | YACGTR | 2 cut(s) | 537, 877 |
| BsaBI | GATNNNNATC | 1 cut(s) | 191 |
| BsaHI | GRCGYC | 1 cut(s) | 785 |
| BsaJI | CCNNGG | 5 cut(s) | 67, 144, 145, 629, 1197 |
| BsaWI | WCCGGW | 3 cut(s) | 445, 1102, 1257 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 332, 362, 740, 770 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 150, 966, 1109, 1183, 1198, 1264, 1393 |
| Bse118I | RCCGGY | 1 cut(s) | 1257 |
| Bse1I | ACTGG | 2 cut(s) | 332, 645 |
| Bse3DI | GCAATG | 1 cut(s) | 456 |
| Bse8I | GATNNNNATC | 1 cut(s) | 191 |
| BseAI | TCCGGA | 1 cut(s) | 445 |
| BseBI | CCWGG | 2 cut(s) | 590, 765 |
| BseDI | CCNNGG | 5 cut(s) | 67, 144, 145, 629, 1197 |
| BseGI | GGATG | 2 cut(s) | 639, 1207 |
| BseJI | GATNNNNATC | 1 cut(s) | 191 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 150, 966, 1109, 1183, 1198, 1264, 1393 |
| BseMI | GCAATG | 1 cut(s) | 456 |
| BseMII | CTCAG | 3 cut(s) | 72, 221, 501 |
| BseNI | ACTGG | 2 cut(s) | 332, 645 |
| BseRI | GAGGAG | 5 cut(s) | 323, 326, 731, 764, 1382 |
| BseXI | GCAGC | 1 cut(s) | 1401 |
| BseYI | CCCAGC | 2 cut(s) | 1192, 1441 |
| BshFI | GGCC | 6 cut(s) | 72, 959, 1044, 1164, 1280, 1289 |
| BshTI | ACCGGT | 1 cut(s) | 1257 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 144, 1356 |
| BsiSI | CCGG | 4 cut(s) | 145, 446, 1103, 1258 |
| BslFI | GGGAC | 2 cut(s) | 694, 941 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 150, 966, 1109, 1183, 1198, 1264, 1393 |
| BsmAI | GTCTC | 2 cut(s) | 1003, 1324 |
| BsmFI | GGGAC | 2 cut(s) | 694, 941 |
| BsnI | GGCC | 6 cut(s) | 72, 959, 1044, 1164, 1280, 1289 |
| BsoBI | CYCGRG | 2 cut(s) | 144, 1356 |
| Bsp119I | TTCGAA | 1 cut(s) | 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1191 |
| Bsp13I | TCCGGA | 1 cut(s) | 445 |
| Bsp1407I | TGTACA | 1 cut(s) | 436 |
| Bsp143I | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 510 |
| BspACI | CCGC | 6 cut(s) | 176, 305, 316, 638, 1294, 1394 |
| BspANI | GGCC | 6 cut(s) | 72, 959, 1044, 1164, 1280, 1289 |
| BspCNI | CTCAG | 3 cut(s) | 73, 220, 502 |
| BspEI | TCCGGA | 1 cut(s) | 445 |
| BspHI | TCATGA | 1 cut(s) | 835 |
| BspLI | GGNNCC | 1 cut(s) | 1165 |
| BspPI | GGATC | 3 cut(s) | 620, 711, 1168 |
| BspT104I | TTCGAA | 1 cut(s) | 240 |
| BsrBI | CCGCTC | 2 cut(s) | 316, 1294 |
| BsrDI | GCAATG | 1 cut(s) | 456 |
| BsrFI | RCCGGY | 1 cut(s) | 1257 |
| BsrGI | TGTACA | 1 cut(s) | 436 |
| BsrI | ACTGG | 2 cut(s) | 332, 645 |
| BssAI | RCCGGY | 1 cut(s) | 1257 |
| BssECI | CCNNGG | 5 cut(s) | 67, 144, 145, 629, 1197 |
| BssMI | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| BssNAI | GTATAC | 1 cut(s) | 534 |
| BssNI | GRCGYC | 1 cut(s) | 785 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst1107I | GTATAC | 1 cut(s) | 534 |
| Bst2UI | CCWGG | 2 cut(s) | 590, 765 |
| Bst4CI | ACNGT | 3 cut(s) | 468, 932, 1253 |
| Bst6I | CTCTTC | 2 cut(s) | 599, 1403 |
| BstACI | GRCGYC | 1 cut(s) | 785 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 887 |
| BstAUI | TGTACA | 1 cut(s) | 436 |
| BstBAI | YACGTR | 2 cut(s) | 537, 877 |
| BstBI | TTCGAA | 1 cut(s) | 240 |
| BstC8I | GCNNGC | 1 cut(s) | 1242 |
| BstDEI | CTNAG | 9 cut(s) | 81, 167, 207, 510, 723, 797, 1035, 1363, 1422 |
| BstDSI | CCRYGG | 2 cut(s) | 629, 1197 |
| BstF5I | GGATG | 2 cut(s) | 639, 1207 |
| BstKTI | GATC | 6 cut(s) | 195, 456, 628, 706, 1075, 1176 |
| BstMAI | GTCTC | 2 cut(s) | 1003, 1324 |
| BstMBI | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 413, 887, 1286 |
| BstNI | CCWGG | 2 cut(s) | 590, 765 |
| BstNSI | RCATGY | 3 cut(s) | 395, 853, 1061 |
| BstSCI | CCNGG | 4 cut(s) | 143, 144, 588, 763 |
| BstV1I | GCAGC | 1 cut(s) | 1401 |
| BstV2I | GAAGAC | 2 cut(s) | 167, 388 |
| BstX2I | RGATCY | 2 cut(s) | 703, 1173 |
| BstYI | RGATCY | 2 cut(s) | 703, 1173 |
| BstZ17I | GTATAC | 1 cut(s) | 534 |
| BsuRI | GGCC | 6 cut(s) | 72, 959, 1044, 1164, 1280, 1289 |
| BtgI | CCRYGG | 2 cut(s) | 629, 1197 |
| BtsCI | GGATG | 2 cut(s) | 639, 1207 |
| BtsI | GCAGTG | 1 cut(s) | 268 |
| BtsIMutI | CAGTG | 3 cut(s) | 268, 325, 937 |
| Cac8I | GCNNGC | 1 cut(s) | 1242 |
| CciI | TCATGA | 1 cut(s) | 835 |
| Cfr10I | RCCGGY | 1 cut(s) | 1257 |
| Cfr13I | GGNCC | 5 cut(s) | 957, 1042, 1163, 1278, 1287 |
| Cfr9I | CCCGGG | 1 cut(s) | 144 |
| CseI | GACGC | 1 cut(s) | 774 |
| CsiI | ACCWGGT | 1 cut(s) | 588 |
| Csp6I | GTAC | 4 cut(s) | 8, 64, 437, 1113 |
| CspAI | ACCGGT | 1 cut(s) | 1257 |
| CviQI | GTAC | 4 cut(s) | 8, 64, 437, 1113 |
| DdeI | CTNAG | 9 cut(s) | 81, 167, 207, 510, 723, 797, 1035, 1363, 1422 |
| DpnI | GATC | 6 cut(s) | 194, 455, 627, 705, 1074, 1175 |
| DpnII | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| DraIII | CACNNNGTG | 1 cut(s) | 331 |
| Eam1104I | CTCTTC | 2 cut(s) | 599, 1403 |
| EarI | CTCTTC | 2 cut(s) | 599, 1403 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| Eco32I | GATATC | 1 cut(s) | 872 |
| Eco57I | CTGAAG | 2 cut(s) | 536, 1190 |
| Eco88I | CYCGRG | 2 cut(s) | 144, 1356 |
| EcoRI | GAATTC | 1 cut(s) | 740 |
| EcoRII | CCWGG | 2 cut(s) | 588, 763 |
| EcoRV | GATATC | 1 cut(s) | 872 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| EcoT22I | ATGCAT | 1 cut(s) | 393 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1010, 1042 |
| FaqI | GGGAC | 2 cut(s) | 694, 941 |
| FauI | CCCGC | 1 cut(s) | 169 |
| FbaI | TGATCA | 1 cut(s) | 192 |
| FblI | GTMKAC | 1 cut(s) | 533 |
| Fnu4HI | GCNGC | 2 cut(s) | 638, 1415 |
| FokI | GGATG | 2 cut(s) | 646, 1214 |
| Fsp4HI | GCNGC | 2 cut(s) | 638, 1415 |
| FspBI | CTAG | 7 cut(s) | 285, 404, 413, 824, 975, 1182, 1436 |
| GluI | GCNGC | 2 cut(s) | 638, 1415 |
| GsaI | CCCAGC | 2 cut(s) | 1196, 1445 |
| GsuI | CTGGAG | 2 cut(s) | 747, 1031 |
| HaeIII | GGCC | 6 cut(s) | 72, 959, 1044, 1164, 1280, 1289 |
| HapII | CCGG | 4 cut(s) | 145, 446, 1103, 1258 |
| HgaI | GACGC | 1 cut(s) | 774 |
| Hin1I | GRCGYC | 1 cut(s) | 785 |
| HincII | GTYRAC | 2 cut(s) | 943, 1353 |
| HindII | GTYRAC | 2 cut(s) | 943, 1353 |
| HindIII | AAGCTT | 1 cut(s) | 105 |
| HinfI | GANTC | 4 cut(s) | 163, 449, 527, 1432 |
| HpaII | CCGG | 4 cut(s) | 145, 446, 1103, 1258 |
| HphI | GGTGA | 7 cut(s) | 311, 608, 657, 779, 1003, 1054, 1376 |
| Hpy166II | GTNNAC | 5 cut(s) | 534, 759, 943, 1055, 1353 |
| Hpy188I | TCNGA | 3 cut(s) | 134, 708, 1377 |
| Hpy188III | TCNNGA | 2 cut(s) | 446, 836 |
| Hpy8I | GTNNAC | 5 cut(s) | 534, 759, 943, 1055, 1353 |
| HpyAV | CCTTC | 6 cut(s) | 175, 419, 511, 671, 900, 1333 |
| HpyCH4III | ACNGT | 3 cut(s) | 468, 932, 1253 |
| HpyCH4IV | ACGT | 4 cut(s) | 536, 876, 917, 1233 |
| HpyCH4V | TGCA | 5 cut(s) | 261, 271, 391, 890, 900 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 413, 887, 1286 |
| HpyF3I | CTNAG | 9 cut(s) | 81, 167, 207, 510, 723, 797, 1035, 1363, 1422 |
| HpySE526I | ACGT | 4 cut(s) | 536, 876, 917, 1233 |
| Hsp92I | GRCGYC | 1 cut(s) | 785 |
| Kpn2I | TCCGGA | 1 cut(s) | 445 |
| Ksp22I | TGATCA | 1 cut(s) | 192 |
| Kzo9I | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| LmnI | GCTCC | 2 cut(s) | 313, 1186 |
| Lsp1109I | GCAGC | 1 cut(s) | 1401 |
| LweI | GCATC | 3 cut(s) | 258, 624, 841 |
| MabI | ACCWGGT | 1 cut(s) | 588 |
| MaeI | CTAG | 7 cut(s) | 285, 404, 413, 824, 975, 1182, 1436 |
| MaeII | ACGT | 4 cut(s) | 536, 876, 917, 1233 |
| MaeIII | GTNAC | 2 cut(s) | 1060, 1253 |
| MalI | GATC | 6 cut(s) | 194, 455, 627, 705, 1074, 1175 |
| MbiI | CCGCTC | 2 cut(s) | 316, 1294 |
| MboI | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| MboII | GAAGA | 7 cut(s) | 172, 355, 388, 616, 1183, 1417, 1420 |
| MflI | RGATCY | 2 cut(s) | 703, 1173 |
| MhlI | GDGCHC | 1 cut(s) | 1191 |
| MlyI | GAGTC | 1 cut(s) | 157 |
| MmeI | TCCRAC | 1 cut(s) | 1351 |
| Mph1103I | ATGCAT | 1 cut(s) | 393 |
| MroI | TCCGGA | 1 cut(s) | 445 |
| MroXI | GAANNNNTTC | 2 cut(s) | 236, 910 |
| MseI | TTAA | 3 cut(s) | 119, 1125, 1450 |
| MspI | CCGG | 4 cut(s) | 145, 446, 1103, 1258 |
| MspR9I | CCNGG | 4 cut(s) | 145, 146, 590, 765 |
| MvaI | CCWGG | 2 cut(s) | 590, 765 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 413, 887, 1286 |
| NciI | CCSGG | 2 cut(s) | 145, 146 |
| NdeII | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| NlaIV | GGNNCC | 1 cut(s) | 1165 |
| NmeAIII | GCCGAG | 1 cut(s) | 1315 |
| NmuCI | GTSAC | 2 cut(s) | 1060, 1253 |
| NsiI | ATGCAT | 1 cut(s) | 393 |
| NspI | RCATGY | 3 cut(s) | 395, 853, 1061 |
| NspV | TTCGAA | 1 cut(s) | 240 |
| PagI | TCATGA | 1 cut(s) | 835 |
| PciI | ACATGT | 1 cut(s) | 1057 |
| PdmI | GAANNNNTTC | 2 cut(s) | 236, 910 |
| PfeI | GAWTC | 3 cut(s) | 449, 527, 1432 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 966 |
| PinAI | ACCGGT | 1 cut(s) | 1257 |
| PkrI | GCNGC | 2 cut(s) | 639, 1416 |
| PleI | GAGTC | 1 cut(s) | 157 |
| PpsI | GAGTC | 1 cut(s) | 157 |
| Ppu21I | YACGTR | 2 cut(s) | 537, 877 |
| PscI | ACATGT | 1 cut(s) | 1057 |
| Psp6I | CCWGG | 2 cut(s) | 588, 763 |
| PspFI | CCCAGC | 2 cut(s) | 1192, 1441 |
| PspGI | CCWGG | 2 cut(s) | 588, 763 |
| PspN4I | GGNNCC | 1 cut(s) | 1165 |
| PspPI | GGNCC | 5 cut(s) | 957, 1042, 1163, 1278, 1287 |
| PsuI | RGATCY | 2 cut(s) | 703, 1173 |
| RsaI | GTAC | 4 cut(s) | 9, 65, 438, 1114 |
| RsaNI | GTAC | 4 cut(s) | 8, 64, 437, 1113 |
| SaqAI | TTAA | 3 cut(s) | 119, 1125, 1450 |
| SatI | GCNGC | 2 cut(s) | 638, 1415 |
| Sau3AI | GATC | 6 cut(s) | 192, 453, 625, 703, 1072, 1173 |
| Sau96I | GGNCC | 5 cut(s) | 957, 1042, 1163, 1278, 1287 |
| SchI | GAGTC | 1 cut(s) | 157 |
| ScrFI | CCNGG | 4 cut(s) | 145, 146, 590, 765 |
| SduI | GDGCHC | 1 cut(s) | 1191 |
| SexAI | ACCWGGT | 1 cut(s) | 588 |
| SfaNI | GCATC | 3 cut(s) | 258, 624, 841 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1286 |
| SfuI | TTCGAA | 1 cut(s) | 240 |
| SmaI | CCCGGG | 1 cut(s) | 146 |
| SpeI | ACTAGT | 1 cut(s) | 823 |
| SsiI | CCGC | 6 cut(s) | 176, 305, 316, 638, 1294, 1394 |
| SspI | AATATT | 1 cut(s) | 482 |
| SspMI | CTAG | 7 cut(s) | 285, 404, 413, 824, 975, 1182, 1436 |
| StyD4I | CCNGG | 4 cut(s) | 143, 144, 588, 763 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaaI | ACNGT | 3 cut(s) | 468, 932, 1253 |
| TaiI | ACGT | 4 cut(s) | 539, 879, 920, 1236 |
| TaqI | TCGA | 6 cut(s) | 240, 452, 463, 490, 583, 805 |
| TatI | WGTACW | 1 cut(s) | 436 |
| TauI | GCSGC | 1 cut(s) | 640 |
| TfiI | GAWTC | 3 cut(s) | 449, 527, 1432 |
| Tru1I | TTAA | 3 cut(s) | 119, 1125, 1450 |
| Tru9I | TTAA | 3 cut(s) | 119, 1125, 1450 |
| TscAI | CASTG | 3 cut(s) | 268, 332, 937 |
| TseFI | GTSAC | 2 cut(s) | 1060, 1253 |
| TseI | GCWGC | 1 cut(s) | 1414 |
| Tsp45I | GTSAC | 2 cut(s) | 1060, 1253 |
| TspDTI | ATGAA | 5 cut(s) | 245, 733, 962, 989, 1349 |
| TspGWI | ACGGA | 4 cut(s) | 618, 698, 1067, 1214 |
| TspMI | CCCGGG | 1 cut(s) | 144 |
| TspRI | CASTG | 3 cut(s) | 268, 332, 937 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 966 |
| XapI | RAATTY | 5 cut(s) | 321, 740, 883, 996, 1336 |
| XceI | RCATGY | 3 cut(s) | 395, 853, 1061 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 596 |
| XmaI | CCCGGG | 1 cut(s) | 144 |
| XmiI | GTMKAC | 1 cut(s) | 533 |
| XmnI | GAANNNNTTC | 2 cut(s) | 236, 910 |
| XspI | CTAG | 7 cut(s) | 285, 404, 413, 824, 975, 1182, 1436 |
| Zsp2I | ATGCAT | 1 cut(s) | 393 |