ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 72 - 138 | 6.8e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 479 |
| AciI | CCGC | 2 cut(s) | 443, 477 |
| AcuI | CTGAAG | 2 cut(s) | 40, 216 |
| AcyI | GRCGYC | 1 cut(s) | 480 |
| AfaI | GTAC | 1 cut(s) | 324 |
| AgsI | TTSAA | 3 cut(s) | 265, 311, 401 |
| AjnI | CCWGG | 1 cut(s) | 464 |
| AluBI | AGCT | 4 cut(s) | 95, 200, 237, 472 |
| AluI | AGCT | 4 cut(s) | 95, 200, 237, 472 |
| Alw26I | GTCTC | 1 cut(s) | 399 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 98 |
| AoxI | GGCC | 1 cut(s) | 366 |
| ApeKI | GCWGC | 6 cut(s) | 51, 92, 95, 98, 101, 469 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 398, 430 |
| AspLEI | GCGC | 3 cut(s) | 434, 463, 482 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 306, 339 |
| BanI | GGYRCC | 1 cut(s) | 479 |
| BbvI | GCAGC | 6 cut(s) | 38, 82, 85, 88, 104, 481 |
| BccI | CCATC | 2 cut(s) | 322, 358 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 266, 300 |
| BciT130I | CCWGG | 1 cut(s) | 466 |
| BcoDI | GTCTC | 1 cut(s) | 399 |
| BfaI | CTAG | 5 cut(s) | 290, 428, 435, 473, 484 |
| BfoI | RGCGCY | 3 cut(s) | 435, 464, 483 |
| BisI | GCNGC | 7 cut(s) | 52, 93, 96, 99, 102, 470, 478 |
| BlsI | GCNGC | 7 cut(s) | 53, 94, 97, 100, 103, 471, 479 |
| Bme1390I | CCNGG | 1 cut(s) | 466 |
| BmiI | GGNNCC | 2 cut(s) | 185, 481 |
| BmrFI | CCNGG | 1 cut(s) | 466 |
| BmrI | ACTGGG | 1 cut(s) | 72 |
| BmsI | GCATC | 1 cut(s) | 113 |
| BmuI | ACTGGG | 1 cut(s) | 72 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 1 cut(s) | 367 |
| BsaHI | GRCGYC | 1 cut(s) | 480 |
| BsaJI | CCNNGG | 1 cut(s) | 464 |
| Bse1I | ACTGG | 1 cut(s) | 78 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| BseBI | CCWGG | 1 cut(s) | 466 |
| BseDI | CCNNGG | 1 cut(s) | 464 |
| BseGI | GGATG | 2 cut(s) | 104, 369 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 78 |
| BseRI | GAGGAG | 3 cut(s) | 162, 180, 471 |
| BseXI | GCAGC | 6 cut(s) | 38, 82, 85, 88, 104, 481 |
| BshFI | GGCC | 1 cut(s) | 368 |
| BshNI | GGYRCC | 1 cut(s) | 479 |
| BsmAI | GTCTC | 1 cut(s) | 399 |
| BsnI | GGCC | 1 cut(s) | 368 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| Bsp143I | GATC | 1 cut(s) | 135 |
| BspACI | CCGC | 2 cut(s) | 443, 477 |
| BspANI | GGCC | 1 cut(s) | 368 |
| BspLI | GGNNCC | 2 cut(s) | 185, 481 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BspT107I | GGYRCC | 1 cut(s) | 479 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrI | ACTGG | 1 cut(s) | 78 |
| BssECI | CCNNGG | 1 cut(s) | 464 |
| BssMI | GATC | 1 cut(s) | 135 |
| BssNI | GRCGYC | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 1 cut(s) | 466 |
| Bst4CI | ACNGT | 1 cut(s) | 224 |
| BstACI | GRCGYC | 1 cut(s) | 480 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 98 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 23 |
| BstDEI | CTNAG | 1 cut(s) | 166 |
| BstF5I | GGATG | 2 cut(s) | 104, 369 |
| BstH2I | RGCGCY | 3 cut(s) | 435, 464, 483 |
| BstHHI | GCGC | 3 cut(s) | 434, 463, 482 |
| BstKTI | GATC | 1 cut(s) | 138 |
| BstMAI | GTCTC | 1 cut(s) | 399 |
| BstMBI | GATC | 1 cut(s) | 135 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 98, 101, 440, 469 |
| BstNI | CCWGG | 1 cut(s) | 466 |
| BstSCI | CCNGG | 1 cut(s) | 464 |
| BstV1I | GCAGC | 6 cut(s) | 38, 82, 85, 88, 104, 481 |
| BsuRI | GGCC | 1 cut(s) | 368 |
| BtsCI | GGATG | 2 cut(s) | 104, 369 |
| BtsI | GCAGTG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 23 |
| CaiI | CAGNNNCTG | 1 cut(s) | 98 |
| CfoI | GCGC | 3 cut(s) | 434, 463, 482 |
| Csp6I | GTAC | 1 cut(s) | 323 |
| CviJI | RGCY | 9 cut(s) | 38, 95, 184, 200, 237, 344, 368, 381, 472 |
| CviKI_1 | RGCY | 9 cut(s) | 38, 95, 184, 200, 237, 344, 368, 381, 472 |
| CviQI | GTAC | 1 cut(s) | 323 |
| DdeI | CTNAG | 1 cut(s) | 166 |
| DinI | GGCGCC | 1 cut(s) | 481 |
| DpnI | GATC | 1 cut(s) | 137 |
| DpnII | GATC | 1 cut(s) | 135 |
| Eco57I | CTGAAG | 2 cut(s) | 40, 216 |
| EcoRII | CCWGG | 1 cut(s) | 464 |
| EgeI | GGCGCC | 1 cut(s) | 481 |
| EheI | GGCGCC | 1 cut(s) | 481 |
| FaiI | YATR | 4 cut(s) | 41, 68, 120, 203 |
| Fnu4HI | GCNGC | 7 cut(s) | 52, 93, 96, 99, 102, 470, 478 |
| FokI | GGATG | 2 cut(s) | 91, 376 |
| Fsp4HI | GCNGC | 7 cut(s) | 52, 93, 96, 99, 102, 470, 478 |
| FspBI | CTAG | 5 cut(s) | 290, 428, 435, 473, 484 |
| GlaI | GCGC | 3 cut(s) | 433, 462, 481 |
| GluI | GCNGC | 7 cut(s) | 52, 93, 96, 99, 102, 470, 478 |
| HaeII | RGCGCY | 3 cut(s) | 435, 464, 483 |
| HaeIII | GGCC | 1 cut(s) | 368 |
| HhaI | GCGC | 3 cut(s) | 434, 463, 482 |
| Hin1I | GRCGYC | 1 cut(s) | 480 |
| Hin6I | GCGC | 3 cut(s) | 432, 461, 480 |
| HinP1I | GCGC | 3 cut(s) | 432, 461, 480 |
| HinfI | GANTC | 2 cut(s) | 269, 351 |
| Hpy188I | TCNGA | 2 cut(s) | 59, 135 |
| Hpy188III | TCNNGA | 2 cut(s) | 194, 394 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 2 cut(s) | 28, 395 |
| HpyCH4III | ACNGT | 1 cut(s) | 224 |
| HpyCH4V | TGCA | 4 cut(s) | 92, 104, 173, 411 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 98, 101, 440, 469 |
| HpyF3I | CTNAG | 1 cut(s) | 166 |
| Hsp92I | GRCGYC | 1 cut(s) | 480 |
| HspAI | GCGC | 3 cut(s) | 432, 461, 480 |
| KasI | GGCGCC | 1 cut(s) | 479 |
| Kzo9I | GATC | 1 cut(s) | 135 |
| LmnI | GCTCC | 2 cut(s) | 189, 458 |
| LpnPI | CCDG | 8 cut(s) | 7, 91, 122, 207, 247, 436, 451, 478 |
| Lsp1109I | GCAGC | 6 cut(s) | 38, 82, 85, 88, 104, 481 |
| LweI | GCATC | 1 cut(s) | 113 |
| MaeI | CTAG | 5 cut(s) | 290, 428, 435, 473, 484 |
| MalI | GATC | 1 cut(s) | 137 |
| MboI | GATC | 1 cut(s) | 135 |
| MboII | GAAGA | 1 cut(s) | 253 |
| MluCI | AATT | 3 cut(s) | 115, 174, 210 |
| Mly113I | GGCGCC | 1 cut(s) | 480 |
| MlyI | GAGTC | 2 cut(s) | 263, 360 |
| MnlI | CCTC | 4 cut(s) | 140, 198, 201, 449 |
| MseI | TTAA | 3 cut(s) | 177, 207, 213 |
| MspA1I | CMGCKG | 1 cut(s) | 95 |
| MspR9I | CCNGG | 1 cut(s) | 466 |
| MvaI | CCWGG | 1 cut(s) | 466 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 98, 101, 440, 469 |
| NarI | GGCGCC | 1 cut(s) | 480 |
| NdeII | GATC | 1 cut(s) | 135 |
| NlaIV | GGNNCC | 2 cut(s) | 185, 481 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| PkrI | GCNGC | 7 cut(s) | 53, 94, 97, 100, 103, 471, 479 |
| PleI | GAGTC | 2 cut(s) | 263, 359 |
| PluTI | GGCGCC | 1 cut(s) | 483 |
| PpsI | GAGTC | 2 cut(s) | 263, 359 |
| Psp6I | CCWGG | 1 cut(s) | 464 |
| PspGI | CCWGG | 1 cut(s) | 464 |
| PspN4I | GGNNCC | 2 cut(s) | 185, 481 |
| PstNI | CAGNNNCTG | 1 cut(s) | 98 |
| PvuII | CAGCTG | 1 cut(s) | 95 |
| RsaI | GTAC | 1 cut(s) | 324 |
| RsaNI | GTAC | 1 cut(s) | 323 |
| SaqAI | TTAA | 3 cut(s) | 177, 207, 213 |
| SatI | GCNGC | 7 cut(s) | 52, 93, 96, 99, 102, 470, 478 |
| Sau3AI | GATC | 1 cut(s) | 135 |
| SchI | GAGTC | 2 cut(s) | 263, 360 |
| ScrFI | CCNGG | 1 cut(s) | 466 |
| SetI | ASST | 5 cut(s) | 97, 172, 202, 239, 474 |
| SfaNI | GCATC | 1 cut(s) | 113 |
| SfoI | GGCGCC | 1 cut(s) | 481 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SmlI | CTYRAG | 1 cut(s) | 346 |
| SmoI | CTYRAG | 1 cut(s) | 346 |
| Sse9I | AATT | 3 cut(s) | 115, 174, 210 |
| SsiI | CCGC | 2 cut(s) | 443, 477 |
| SspDI | GGCGCC | 1 cut(s) | 479 |
| SspMI | CTAG | 5 cut(s) | 290, 428, 435, 473, 484 |
| StyD4I | CCNGG | 1 cut(s) | 464 |
| TaaI | ACNGT | 1 cut(s) | 224 |
| TaqI | TCGA | 2 cut(s) | 219, 417 |
| TasI | AATT | 3 cut(s) | 115, 174, 210 |
| TauI | GCSGC | 1 cut(s) | 480 |
| Tru1I | TTAA | 3 cut(s) | 177, 207, 213 |
| Tru9I | TTAA | 3 cut(s) | 177, 207, 213 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TseI | GCWGC | 6 cut(s) | 51, 92, 95, 98, 101, 469 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 300 |
| XspI | CTAG | 5 cut(s) | 290, 428, 435, 473, 484 |