Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 158 |
| AccB1I | GGYRCC | 1 cut(s) | 279 |
| AccBSI | CCGCTC | 1 cut(s) | 371 |
| AccI | GTMKAC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 304 |
| AccIII | TCCGGA | 1 cut(s) | 358 |
| AciI | CCGC | 5 cut(s) | 38, 304, 371, 446, 512 |
| AclWI | GGATC | 4 cut(s) | 428, 600, 1021, 1321 |
| AcsI | RAATTY | 2 cut(s) | 550, 601 |
| AcuI | CTGAAG | 2 cut(s) | 879, 1293 |
| AcyI | GRCGYC | 2 cut(s) | 215, 308 |
| AfaI | GTAC | 4 cut(s) | 113, 331, 727, 1187 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 246, 317, 365 |
| AflIII | ACRYGT | 1 cut(s) | 196 |
| AgsI | TTSAA | 6 cut(s) | 9, 208, 746, 820, 827, 1123 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 897 |
| AjiI | CACGTC | 1 cut(s) | 1080 |
| AleI | CACNNNNGTG | 1 cut(s) | 195 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 1 cut(s) | 776 |
| AlwI | GGATC | 4 cut(s) | 428, 600, 1021, 1321 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 412 |
| Aor13HI | TCCGGA | 1 cut(s) | 358 |
| AoxI | GGCC | 2 cut(s) | 1037, 1262 |
| ApeKI | GCWGC | 6 cut(s) | 20, 23, 119, 406, 608, 1304 |
| ApoI | RAATTY | 2 cut(s) | 550, 601 |
| AseI | ATTAAT | 1 cut(s) | 1097 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1098 |
| AspLEI | GCGC | 2 cut(s) | 304, 857 |
| AspS9I | GGNCC | 1 cut(s) | 1038 |
| AsuC2I | CCSGG | 1 cut(s) | 247 |
| AsuII | TTCGAA | 1 cut(s) | 518 |
| BaeGI | GKGCMC | 1 cut(s) | 1079 |
| BanI | GGYRCC | 1 cut(s) | 279 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 512, 544 |
| BbsI | GAAGAC | 2 cut(s) | 753, 834 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 6 cut(s) | 10, 32, 106, 418, 620, 1316 |
| BccI | CCATC | 2 cut(s) | 102, 280 |
| BceAI | ACGGC | 5 cut(s) | 84, 228, 329, 334, 793 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 740, 774 |
| BcnI | CCSGG | 1 cut(s) | 247 |
| BcoDI | GTCTC | 1 cut(s) | 776 |
| BfaI | CTAG | 3 cut(s) | 105, 641, 1266 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 277 |
| BisI | GCNGC | 7 cut(s) | 21, 24, 39, 120, 407, 609, 1305 |
| BlsI | GCNGC | 7 cut(s) | 22, 25, 40, 121, 408, 610, 1306 |
| Bme1390I | CCNGG | 1 cut(s) | 247 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 897 |
| BmgBI | CACGTC | 1 cut(s) | 1080 |
| BmgT120I | GGNCC | 1 cut(s) | 1038 |
| BmiI | GGNNCC | 3 cut(s) | 281, 423, 807 |
| BmrFI | CCNGG | 1 cut(s) | 247 |
| BmrI | ACTGGG | 1 cut(s) | 576 |
| BmsI | GCATC | 3 cut(s) | 118, 748, 967 |
| BmuI | ACTGGG | 1 cut(s) | 576 |
| BpiI | GAAGAC | 2 cut(s) | 753, 834 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 137, 169 |
| Bpu14I | TTCGAA | 1 cut(s) | 518 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BpuMI | CCSGG | 1 cut(s) | 247 |
| Bsa29I | ATCGAT | 1 cut(s) | 792 |
| BsaHI | GRCGYC | 2 cut(s) | 215, 308 |
| BsaJI | CCNNGG | 3 cut(s) | 283, 311, 1019 |
| BsaWI | WCCGGW | 4 cut(s) | 201, 326, 358, 728 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 246, 317, 365 |
| Bse1I | ACTGG | 2 cut(s) | 175, 582 |
| Bse3DI | GCAATG | 1 cut(s) | 1155 |
| BseAI | TCCGGA | 1 cut(s) | 358 |
| BseCI | ATCGAT | 1 cut(s) | 792 |
| BseDI | CCNNGG | 3 cut(s) | 283, 311, 1019 |
| BseGI | GGATG | 2 cut(s) | 877, 1141 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 246, 317, 365 |
| BseMI | GCAATG | 1 cut(s) | 1155 |
| BseMII | CTCAG | 2 cut(s) | 771, 1245 |
| BseNI | ACTGG | 2 cut(s) | 175, 582 |
| BseRI | GAGGAG | 7 cut(s) | 145, 404, 413, 416, 731, 881, 1213 |
| BseSI | GKGCMC | 1 cut(s) | 1079 |
| BseXI | GCAGC | 6 cut(s) | 10, 32, 106, 418, 620, 1316 |
| BsgI | GTGCAG | 1 cut(s) | 439 |
| Bsh1236I | CGCG | 1 cut(s) | 304 |
| BshFI | GGCC | 2 cut(s) | 1039, 1264 |
| BshNI | GGYRCC | 1 cut(s) | 279 |
| BshVI | ATCGAT | 1 cut(s) | 792 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiSI | CCGG | 6 cut(s) | 202, 246, 327, 359, 729, 1145 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 246, 317, 365 |
| BsmAI | GTCTC | 1 cut(s) | 776 |
| BsmBI | CGTCTC | 1 cut(s) | 776 |
| BsmI | GAATGC | 1 cut(s) | 1255 |
| BsnI | GGCC | 2 cut(s) | 1039, 1264 |
| Bsp119I | TTCGAA | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 2 cut(s) | 453, 1079 |
| Bsp13I | TCCGGA | 1 cut(s) | 358 |
| Bsp143I | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| BspACI | CCGC | 5 cut(s) | 38, 304, 371, 446, 512 |
| BspANI | GGCC | 2 cut(s) | 1039, 1264 |
| BspCNI | CTCAG | 2 cut(s) | 772, 1246 |
| BspDI | ATCGAT | 1 cut(s) | 792 |
| BspEI | TCCGGA | 1 cut(s) | 358 |
| BspFNI | CGCG | 1 cut(s) | 304 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 3 cut(s) | 281, 423, 807 |
| BspPI | GGATC | 4 cut(s) | 428, 600, 1021, 1321 |
| BspQI | GCTCTTC | 1 cut(s) | 921 |
| BspT104I | TTCGAA | 1 cut(s) | 518 |
| BspT107I | GGYRCC | 1 cut(s) | 279 |
| BsrBI | CCGCTC | 1 cut(s) | 371 |
| BsrDI | GCAATG | 1 cut(s) | 1155 |
| BsrI | ACTGG | 2 cut(s) | 175, 582 |
| BssECI | CCNNGG | 3 cut(s) | 283, 311, 1019 |
| BssMI | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| BssNAI | GTATAC | 1 cut(s) | 430 |
| BssNI | GRCGYC | 2 cut(s) | 215, 308 |
| Bst1107I | GTATAC | 1 cut(s) | 430 |
| Bst4CI | ACNGT | 2 cut(s) | 116, 478 |
| Bst6I | CTCTTC | 6 cut(s) | 92, 727, 908, 921, 941, 1253 |
| BstACI | GRCGYC | 2 cut(s) | 215, 308 |
| BstBI | TTCGAA | 1 cut(s) | 518 |
| BstC8I | GCNNGC | 4 cut(s) | 184, 772, 846, 1061 |
| BstDEI | CTNAG | 3 cut(s) | 780, 1254, 1331 |
| BstDSI | CCRYGG | 2 cut(s) | 311, 1019 |
| BstF5I | GGATG | 2 cut(s) | 877, 1141 |
| BstFNI | CGCG | 1 cut(s) | 304 |
| BstHHI | GCGC | 2 cut(s) | 304, 857 |
| BstKTI | GATC | 7 cut(s) | 436, 577, 595, 792, 796, 1016, 1316 |
| BstMAI | GTCTC | 1 cut(s) | 776 |
| BstMBI | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| BstSCI | CCNGG | 1 cut(s) | 245 |
| BstSLI | GKGCMC | 1 cut(s) | 1079 |
| BstUI | CGCG | 1 cut(s) | 304 |
| BstV1I | GCAGC | 6 cut(s) | 10, 32, 106, 418, 620, 1316 |
| BstV2I | GAAGAC | 2 cut(s) | 753, 834 |
| BstX2I | RGATCY | 3 cut(s) | 592, 1013, 1313 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 589 |
| BstYI | RGATCY | 3 cut(s) | 592, 1013, 1313 |
| BstZ17I | GTATAC | 1 cut(s) | 430 |
| Bsu15I | ATCGAT | 1 cut(s) | 792 |
| BsuRI | GGCC | 2 cut(s) | 1039, 1264 |
| BsuTUI | ATCGAT | 1 cut(s) | 792 |
| BtgI | CCRYGG | 2 cut(s) | 311, 1019 |
| BtrI | CACGTC | 1 cut(s) | 1080 |
| BtsCI | GGATG | 2 cut(s) | 877, 1141 |
| BtsIMutI | CAGTG | 1 cut(s) | 589 |
| Cac8I | GCNNGC | 4 cut(s) | 184, 772, 846, 1061 |
| CaiI | CAGNNNCTG | 1 cut(s) | 412 |
| CciI | TCATGA | 1 cut(s) | 691 |
| CfoI | GCGC | 2 cut(s) | 304, 857 |
| Cfr13I | GGNCC | 1 cut(s) | 1038 |
| ClaI | ATCGAT | 1 cut(s) | 792 |
| CseI | GACGC | 2 cut(s) | 204, 316 |
| Csp6I | GTAC | 4 cut(s) | 112, 330, 726, 1186 |
| CviAII | CATG | 7 cut(s) | 276, 566, 589, 664, 692, 1072, 1345 |
| CviQI | GTAC | 4 cut(s) | 112, 330, 726, 1186 |
| DdeI | CTNAG | 3 cut(s) | 780, 1254, 1331 |
| DpnI | GATC | 7 cut(s) | 435, 576, 594, 791, 795, 1015, 1315 |
| DpnII | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 158 |
| DriI | GACNNNNNGTC | 1 cut(s) | 897 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 158 |
| Eam1104I | CTCTTC | 6 cut(s) | 92, 727, 908, 921, 941, 1253 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 897 |
| EarI | CTCTTC | 6 cut(s) | 92, 727, 908, 921, 941, 1253 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco147I | AGGCCT | 1 cut(s) | 1264 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 2 cut(s) | 879, 1293 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| Esp3I | CGTCTC | 1 cut(s) | 776 |
| FaeI | CATG | 7 cut(s) | 279, 569, 592, 667, 695, 1075, 1348 |
| FatI | CATG | 7 cut(s) | 275, 565, 588, 663, 691, 1071, 1344 |
| FblI | GTMKAC | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 7 cut(s) | 21, 24, 39, 120, 407, 609, 1305 |
| FokI | GGATG | 2 cut(s) | 884, 1128 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 7 cut(s) | 21, 24, 39, 120, 407, 609, 1305 |
| FspBI | CTAG | 3 cut(s) | 105, 641, 1266 |
| GlaI | GCGC | 2 cut(s) | 303, 856 |
| GluI | GCNGC | 7 cut(s) | 21, 24, 39, 120, 407, 609, 1305 |
| HaeIII | GGCC | 2 cut(s) | 1039, 1264 |
| HapII | CCGG | 6 cut(s) | 202, 246, 327, 359, 729, 1145 |
| HgaI | GACGC | 2 cut(s) | 204, 316 |
| HhaI | GCGC | 2 cut(s) | 304, 857 |
| Hin1I | GRCGYC | 2 cut(s) | 215, 308 |
| Hin1II | CATG | 7 cut(s) | 279, 569, 592, 667, 695, 1075, 1348 |
| Hin6I | GCGC | 2 cut(s) | 302, 855 |
| HinP1I | GCGC | 2 cut(s) | 302, 855 |
| HindIII | AAGCTT | 1 cut(s) | 740 |
| HinfI | GANTC | 8 cut(s) | 152, 223, 340, 503, 701, 898, 1049, 1341 |
| HpaII | CCGG | 6 cut(s) | 202, 246, 327, 359, 729, 1145 |
| Hpy166II | GTNNAC | 4 cut(s) | 163, 291, 430, 1023 |
| Hpy188I | TCNGA | 7 cut(s) | 265, 339, 368, 798, 1031, 1054, 1242 |
| Hpy188III | TCNNGA | 6 cut(s) | 143, 292, 359, 692, 1216, 1311 |
| Hpy8I | GTNNAC | 4 cut(s) | 163, 291, 430, 1023 |
| Hpy99I | CGWCG | 4 cut(s) | 56, 220, 223, 565 |
| HpyAV | CCTTC | 3 cut(s) | 662, 1272, 1331 |
| HpyCH4III | ACNGT | 2 cut(s) | 116, 478 |
| HpyCH4IV | ACGT | 3 cut(s) | 51, 196, 1079 |
| HpyCH4V | TGCA | 4 cut(s) | 456, 608, 942, 1304 |
| HpyF3I | CTNAG | 3 cut(s) | 780, 1254, 1331 |
| HpySE526I | ACGT | 3 cut(s) | 51, 196, 1079 |
| Hsp92I | GRCGYC | 2 cut(s) | 215, 308 |
| Hsp92II | CATG | 7 cut(s) | 279, 569, 592, 667, 695, 1075, 1348 |
| HspAI | GCGC | 2 cut(s) | 302, 855 |
| Kpn2I | TCCGGA | 1 cut(s) | 358 |
| Kzo9I | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| LguI | GCTCTTC | 1 cut(s) | 921 |
| LmnI | GCTCC | 5 cut(s) | 368, 403, 448, 805, 1088 |
| Lsp1109I | GCAGC | 6 cut(s) | 10, 32, 106, 418, 620, 1316 |
| LweI | GCATC | 3 cut(s) | 118, 748, 967 |
| MaeI | CTAG | 3 cut(s) | 105, 641, 1266 |
| MaeII | ACGT | 3 cut(s) | 51, 196, 1079 |
| MaeIII | GTNAC | 3 cut(s) | 80, 584, 889 |
| MalI | GATC | 7 cut(s) | 435, 576, 594, 791, 795, 1015, 1315 |
| MbiI | CCGCTC | 1 cut(s) | 371 |
| MboI | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| MflI | RGATCY | 3 cut(s) | 592, 1013, 1313 |
| MhlI | GDGCHC | 2 cut(s) | 453, 1079 |
| MluCI | AATT | 8 cut(s) | 466, 526, 550, 601, 881, 1094, 1098, 1131 |
| MlyI | GAGTC | 4 cut(s) | 146, 907, 1043, 1350 |
| MmeI | TCCRAC | 3 cut(s) | 346, 495, 507 |
| MroI | TCCGGA | 1 cut(s) | 358 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1098 |
| MseI | TTAA | 3 cut(s) | 93, 492, 1097 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspA1I | CMGCKG | 3 cut(s) | 23, 87, 611 |
| MspI | CCGG | 6 cut(s) | 202, 246, 327, 359, 729, 1145 |
| MspR9I | CCNGG | 1 cut(s) | 247 |
| Mva1269I | GAATGC | 1 cut(s) | 1255 |
| MvnI | CGCG | 1 cut(s) | 304 |
| NciI | CCSGG | 1 cut(s) | 247 |
| NdeII | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| NlaIII | CATG | 7 cut(s) | 279, 569, 592, 667, 695, 1075, 1348 |
| NlaIV | GGNNCC | 3 cut(s) | 281, 423, 807 |
| NmeAIII | GCCGAG | 1 cut(s) | 146 |
| NmuCI | GTSAC | 3 cut(s) | 80, 584, 889 |
| NspV | TTCGAA | 1 cut(s) | 518 |
| OliI | CACNNNNGTG | 1 cut(s) | 195 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PceI | AGGCCT | 1 cut(s) | 1264 |
| PciSI | GCTCTTC | 1 cut(s) | 921 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 74, 218, 372 |
| PctI | GAATGC | 1 cut(s) | 1255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1098 |
| PfeI | GAWTC | 4 cut(s) | 223, 340, 503, 701 |
| PfoI | TCCNGGA | 1 cut(s) | 245 |
| PkrI | GCNGC | 7 cut(s) | 22, 25, 40, 121, 408, 610, 1306 |
| PleI | GAGTC | 4 cut(s) | 146, 906, 1043, 1349 |
| PpsI | GAGTC | 4 cut(s) | 146, 906, 1043, 1349 |
| PshBI | ATTAAT | 1 cut(s) | 1097 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 3 cut(s) | 281, 423, 807 |
| PspPI | GGNCC | 1 cut(s) | 1038 |
| PstNI | CAGNNNCTG | 1 cut(s) | 412 |
| PsuI | RGATCY | 3 cut(s) | 592, 1013, 1313 |
| PvuII | CAGCTG | 3 cut(s) | 23, 87, 611 |
| RsaI | GTAC | 4 cut(s) | 113, 331, 727, 1187 |
| RsaNI | GTAC | 4 cut(s) | 112, 330, 726, 1186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SapI | GCTCTTC | 1 cut(s) | 921 |
| SaqAI | TTAA | 3 cut(s) | 93, 492, 1097 |
| SatI | GCNGC | 7 cut(s) | 21, 24, 39, 120, 407, 609, 1305 |
| Sau3AI | GATC | 7 cut(s) | 433, 574, 592, 789, 793, 1013, 1313 |
| Sau96I | GGNCC | 1 cut(s) | 1038 |
| SchI | GAGTC | 4 cut(s) | 146, 907, 1043, 1350 |
| ScrFI | CCNGG | 1 cut(s) | 247 |
| SduI | GDGCHC | 2 cut(s) | 453, 1079 |
| SfaNI | GCATC | 3 cut(s) | 118, 748, 967 |
| SfuI | TTCGAA | 1 cut(s) | 518 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 8 cut(s) | 466, 526, 550, 601, 881, 1094, 1098, 1131 |
| SseBI | AGGCCT | 1 cut(s) | 1264 |
| SsiI | CCGC | 5 cut(s) | 38, 304, 371, 446, 512 |
| SspMI | CTAG | 3 cut(s) | 105, 641, 1266 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StuI | AGGCCT | 1 cut(s) | 1264 |
| StyD4I | CCNGG | 1 cut(s) | 245 |
| TaaI | ACNGT | 2 cut(s) | 116, 478 |
| TaiI | ACGT | 3 cut(s) | 54, 199, 1082 |
| TaqI | TCGA | 5 cut(s) | 221, 236, 518, 792, 1217 |
| TasI | AATT | 8 cut(s) | 466, 526, 550, 601, 881, 1094, 1098, 1131 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 4 cut(s) | 223, 340, 503, 701 |
| Tru1I | TTAA | 3 cut(s) | 93, 492, 1097 |
| Tru9I | TTAA | 3 cut(s) | 93, 492, 1097 |
| TscAI | CASTG | 1 cut(s) | 589 |
| TseFI | GTSAC | 3 cut(s) | 80, 584, 889 |
| TseI | GCWGC | 6 cut(s) | 20, 23, 119, 406, 608, 1304 |
| Tsp45I | GTSAC | 3 cut(s) | 80, 584, 889 |
| TspDTI | ATGAA | 6 cut(s) | 543, 708, 926, 1060, 1091, 1286 |
| TspGWI | ACGGA | 5 cut(s) | 148, 728, 800, 1008, 1173 |
| TspRI | CASTG | 1 cut(s) | 589 |
| VspI | ATTAAT | 1 cut(s) | 1097 |
| XapI | RAATTY | 2 cut(s) | 550, 601 |
| XmiI | GTMKAC | 1 cut(s) | 429 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1098 |
| XspI | CTAG | 3 cut(s) | 105, 641, 1266 |