ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 86 - 195 | 2e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 156 |
| AccB1I | GGYRCC | 1 cut(s) | 370 |
| AciI | CCGC | 1 cut(s) | 404 |
| AclWI | GGATC | 1 cut(s) | 324 |
| AcyI | GRCGYC | 1 cut(s) | 371 |
| AfaI | GTAC | 3 cut(s) | 283, 428, 517 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 239, 469 |
| AgsI | TTSAA | 3 cut(s) | 250, 413, 452 |
| AjiI | CACGTC | 2 cut(s) | 143, 379 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 521, 553 |
| AluBI | AGCT | 1 cut(s) | 191 |
| AluI | AGCT | 1 cut(s) | 191 |
| AlwI | GGATC | 1 cut(s) | 324 |
| AoxI | GGCC | 2 cut(s) | 209, 387 |
| ApeKI | GCWGC | 1 cut(s) | 58 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 127, 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 552 |
| AspLEI | GCGC | 2 cut(s) | 157, 373 |
| AspS9I | GGNCC | 1 cut(s) | 387 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 506 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 507, 540 |
| BanI | GGYRCC | 1 cut(s) | 370 |
| BbvCI | CCTCAGC | 1 cut(s) | 366 |
| BbvI | GCAGC | 1 cut(s) | 45 |
| BccI | CCATC | 3 cut(s) | 237, 257, 485 |
| BceAI | ACGGC | 1 cut(s) | 384 |
| BfaI | CTAG | 2 cut(s) | 192, 507 |
| BfmI | CTRYAG | 2 cut(s) | 205, 519 |
| BfoI | RGCGCY | 1 cut(s) | 374 |
| BisI | GCNGC | 2 cut(s) | 59, 405 |
| BlsI | GCNGC | 2 cut(s) | 60, 406 |
| BmcAI | AGTACT | 1 cut(s) | 283 |
| BmgBI | CACGTC | 2 cut(s) | 143, 379 |
| BmgT120I | GGNCC | 1 cut(s) | 387 |
| BmiI | GGNNCC | 3 cut(s) | 372, 388, 438 |
| BmsI | GCATC | 2 cut(s) | 21, 114 |
| Bpu10I | CCTNAGC | 1 cut(s) | 366 |
| BsaHI | GRCGYC | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 2 cut(s) | 221, 390 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 217, 247 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 239, 469 |
| Bse118I | RCCGGY | 1 cut(s) | 127 |
| Bse3DI | GCAATG | 3 cut(s) | 100, 426, 479 |
| BseDI | CCNNGG | 2 cut(s) | 221, 390 |
| BseGI | GGATG | 2 cut(s) | 36, 248 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 239, 469 |
| BseMI | GCAATG | 3 cut(s) | 100, 426, 479 |
| BseMII | CTCAG | 2 cut(s) | 26, 357 |
| BseXI | GCAGC | 1 cut(s) | 45 |
| BshFI | GGCC | 2 cut(s) | 211, 389 |
| BshNI | GGYRCC | 1 cut(s) | 370 |
| BsiSI | CCGG | 2 cut(s) | 128, 374 |
| BslFI | GGGAC | 3 cut(s) | 213, 340, 542 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 239, 469 |
| BsmFI | GGGAC | 3 cut(s) | 213, 340, 542 |
| BsnI | GGCC | 2 cut(s) | 211, 389 |
| Bsp143I | GATC | 3 cut(s) | 316, 381, 499 |
| BspACI | CCGC | 1 cut(s) | 404 |
| BspANI | GGCC | 2 cut(s) | 211, 389 |
| BspCNI | CTCAG | 2 cut(s) | 27, 358 |
| BspLI | GGNNCC | 3 cut(s) | 372, 388, 438 |
| BspPI | GGATC | 1 cut(s) | 324 |
| BspT107I | GGYRCC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 3 cut(s) | 100, 426, 479 |
| BsrFI | RCCGGY | 1 cut(s) | 127 |
| BssAI | RCCGGY | 1 cut(s) | 127 |
| BssECI | CCNNGG | 2 cut(s) | 221, 390 |
| BssMI | GATC | 3 cut(s) | 316, 381, 499 |
| BssNI | GRCGYC | 1 cut(s) | 371 |
| BssT1I | CCWWGG | 2 cut(s) | 221, 390 |
| Bst4CI | ACNGT | 3 cut(s) | 331, 457, 523 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstACI | GRCGYC | 1 cut(s) | 371 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 137, 163, 401 |
| BstC8I | GCNNGC | 5 cut(s) | 129, 153, 168, 397, 435 |
| BstDEI | CTNAG | 2 cut(s) | 35, 366 |
| BstF5I | GGATG | 2 cut(s) | 36, 248 |
| BstH2I | RGCGCY | 1 cut(s) | 374 |
| BstHHI | GCGC | 2 cut(s) | 157, 373 |
| BstKTI | GATC | 3 cut(s) | 319, 384, 502 |
| BstMBI | GATC | 3 cut(s) | 316, 381, 499 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 163, 357, 401 |
| BstSFI | CTRYAG | 2 cut(s) | 205, 519 |
| BstV1I | GCAGC | 1 cut(s) | 45 |
| BsuRI | GGCC | 2 cut(s) | 211, 389 |
| BtrI | CACGTC | 2 cut(s) | 143, 379 |
| BtsCI | GGATG | 2 cut(s) | 36, 248 |
| Cac8I | GCNNGC | 5 cut(s) | 129, 153, 168, 397, 435 |
| CfoI | GCGC | 2 cut(s) | 157, 373 |
| Cfr10I | RCCGGY | 1 cut(s) | 127 |
| Cfr13I | GGNCC | 1 cut(s) | 387 |
| CseI | GACGC | 1 cut(s) | 210 |
| Csp6I | GTAC | 3 cut(s) | 282, 427, 516 |
| CviAII | CATG | 1 cut(s) | 121 |
| CviJI | RGCY | 9 cut(s) | 110, 191, 211, 270, 360, 389, 399, 433, 437 |
| CviKI_1 | RGCY | 9 cut(s) | 110, 191, 211, 270, 360, 389, 399, 433, 437 |
| CviQI | GTAC | 3 cut(s) | 282, 427, 516 |
| DdeI | CTNAG | 2 cut(s) | 35, 366 |
| DinI | GGCGCC | 1 cut(s) | 372 |
| DpnI | GATC | 3 cut(s) | 318, 383, 501 |
| DpnII | GATC | 3 cut(s) | 316, 381, 499 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco130I | CCWWGG | 2 cut(s) | 221, 390 |
| Eco147I | AGGCCT | 1 cut(s) | 211 |
| EcoO109I | RGGNCCY | 1 cut(s) | 387 |
| EcoT14I | CCWWGG | 2 cut(s) | 221, 390 |
| EgeI | GGCGCC | 1 cut(s) | 372 |
| EheI | GGCGCC | 1 cut(s) | 372 |
| ErhI | CCWWGG | 2 cut(s) | 221, 390 |
| FaeI | CATG | 1 cut(s) | 124 |
| FaiI | YATR | 6 cut(s) | 82, 106, 122, 161, 344, 417 |
| FaqI | GGGAC | 3 cut(s) | 213, 340, 542 |
| FatI | CATG | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 405 |
| FokI | GGATG | 2 cut(s) | 43, 255 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 405 |
| FspAI | RTGCGCAY | 1 cut(s) | 156 |
| FspBI | CTAG | 2 cut(s) | 192, 507 |
| FspI | TGCGCA | 1 cut(s) | 156 |
| GlaI | GCGC | 2 cut(s) | 156, 372 |
| GluI | GCNGC | 2 cut(s) | 59, 405 |
| HaeII | RGCGCY | 1 cut(s) | 374 |
| HaeIII | GGCC | 2 cut(s) | 211, 389 |
| HapII | CCGG | 2 cut(s) | 128, 374 |
| HgaI | GACGC | 1 cut(s) | 210 |
| HhaI | GCGC | 2 cut(s) | 157, 373 |
| Hin1I | GRCGYC | 1 cut(s) | 371 |
| Hin1II | CATG | 1 cut(s) | 124 |
| Hin6I | GCGC | 2 cut(s) | 155, 371 |
| HinP1I | GCGC | 2 cut(s) | 155, 371 |
| HinfI | GANTC | 2 cut(s) | 226, 548 |
| HpaII | CCGG | 2 cut(s) | 128, 374 |
| HphI | GGTGA | 2 cut(s) | 53, 506 |
| Hpy188I | TCNGA | 1 cut(s) | 276 |
| HpyCH4III | ACNGT | 3 cut(s) | 331, 457, 523 |
| HpyCH4IV | ACGT | 3 cut(s) | 142, 172, 378 |
| HpyCH4V | TGCA | 3 cut(s) | 140, 170, 419 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 163, 357, 401 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 366 |
| HpySE526I | ACGT | 3 cut(s) | 142, 172, 378 |
| Hsp92I | GRCGYC | 1 cut(s) | 371 |
| Hsp92II | CATG | 1 cut(s) | 124 |
| HspAI | GCGC | 2 cut(s) | 155, 371 |
| KasI | GGCGCC | 1 cut(s) | 370 |
| KroI | GCCGGC | 1 cut(s) | 127 |
| KroNI | GCCGGC | 1 cut(s) | 129 |
| Kzo9I | GATC | 3 cut(s) | 316, 381, 499 |
| LmnI | GCTCC | 1 cut(s) | 442 |
| LpnPI | CCDG | 9 cut(s) | 85, 96, 141, 182, 193, 387, 415, 419, 453 |
| Lsp1109I | GCAGC | 1 cut(s) | 45 |
| LweI | GCATC | 2 cut(s) | 21, 114 |
| MaeI | CTAG | 2 cut(s) | 192, 507 |
| MaeII | ACGT | 3 cut(s) | 142, 172, 378 |
| MaeIII | GTNAC | 2 cut(s) | 183, 578 |
| MalI | GATC | 3 cut(s) | 318, 383, 501 |
| MboI | GATC | 3 cut(s) | 316, 381, 499 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MfeI | CAATTG | 1 cut(s) | 354 |
| MluCI | AATT | 6 cut(s) | 47, 52, 135, 354, 467, 475 |
| Mly113I | GGCGCC | 1 cut(s) | 371 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MnlI | CCTC | 5 cut(s) | 222, 243, 332, 361, 551 |
| MroNI | GCCGGC | 1 cut(s) | 127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 552 |
| MseI | TTAA | 3 cut(s) | 51, 465, 474 |
| MspI | CCGG | 2 cut(s) | 128, 374 |
| MunI | CAATTG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 163, 357, 401 |
| NaeI | GCCGGC | 1 cut(s) | 129 |
| NarI | GGCGCC | 1 cut(s) | 371 |
| NdeII | GATC | 3 cut(s) | 316, 381, 499 |
| NgoMIV | GCCGGC | 1 cut(s) | 127 |
| NlaIII | CATG | 1 cut(s) | 124 |
| NlaIV | GGNNCC | 3 cut(s) | 372, 388, 438 |
| NmuCI | GTSAC | 1 cut(s) | 183 |
| NsbI | TGCGCA | 1 cut(s) | 156 |
| PceI | AGGCCT | 1 cut(s) | 211 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 148 |
| PdiI | GCCGGC | 1 cut(s) | 129 |
| PdmI | GAANNNNTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 1 cut(s) | 548 |
| PkrI | GCNGC | 2 cut(s) | 60, 406 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PluTI | GGCGCC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 3 cut(s) | 372, 388, 438 |
| PspPI | GGNCC | 1 cut(s) | 387 |
| RsaI | GTAC | 3 cut(s) | 283, 428, 517 |
| RsaNI | GTAC | 3 cut(s) | 282, 427, 516 |
| SaqAI | TTAA | 3 cut(s) | 51, 465, 474 |
| SatI | GCNGC | 2 cut(s) | 59, 405 |
| Sau3AI | GATC | 3 cut(s) | 316, 381, 499 |
| Sau96I | GGNCC | 1 cut(s) | 387 |
| ScaI | AGTACT | 1 cut(s) | 283 |
| SchI | GAGTC | 1 cut(s) | 220 |
| SetI | ASST | 7 cut(s) | 145, 175, 193, 223, 261, 343, 381 |
| SfaNI | GCATC | 2 cut(s) | 21, 114 |
| SfcI | CTRYAG | 2 cut(s) | 205, 519 |
| SfoI | GGCGCC | 1 cut(s) | 372 |
| Sse9I | AATT | 6 cut(s) | 47, 52, 135, 354, 467, 475 |
| SseBI | AGGCCT | 1 cut(s) | 211 |
| SsiI | CCGC | 1 cut(s) | 404 |
| SspDI | GGCGCC | 1 cut(s) | 370 |
| SspMI | CTAG | 2 cut(s) | 192, 507 |
| StuI | AGGCCT | 1 cut(s) | 211 |
| StyI | CCWWGG | 2 cut(s) | 221, 390 |
| TaaI | ACNGT | 3 cut(s) | 331, 457, 523 |
| TaiI | ACGT | 3 cut(s) | 145, 175, 381 |
| TasI | AATT | 6 cut(s) | 47, 52, 135, 354, 467, 475 |
| TatI | WGTACW | 2 cut(s) | 281, 426 |
| TauI | GCSGC | 1 cut(s) | 407 |
| TfiI | GAWTC | 1 cut(s) | 548 |
| Tru1I | TTAA | 3 cut(s) | 51, 465, 474 |
| Tru9I | TTAA | 3 cut(s) | 51, 465, 474 |
| TseFI | GTSAC | 1 cut(s) | 183 |
| TseI | GCWGC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 183 |
| TspDTI | ATGAA | 3 cut(s) | 468, 552, 563 |
| XmnI | GAANNNNTTC | 1 cut(s) | 552 |
| XspI | CTAG | 2 cut(s) | 192, 507 |
| ZrmI | AGTACT | 1 cut(s) | 283 |