Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 53 |
| Acc36I | ACCTGC | 1 cut(s) | 53 |
| AccB1I | GGYRCC | 1 cut(s) | 545 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 371 |
| AccI | GTMKAC | 1 cut(s) | 23 |
| AccII | CGCG | 1 cut(s) | 73 |
| AciI | CCGC | 4 cut(s) | 71, 73, 80, 139 |
| AclWI | GGATC | 2 cut(s) | 339, 352 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 3 cut(s) | 528, 539, 590 |
| AluBI | AGCT | 4 cut(s) | 10, 144, 333, 414 |
| AluI | AGCT | 4 cut(s) | 10, 144, 333, 414 |
| Alw21I | GWGCWC | 1 cut(s) | 253 |
| Alw26I | GTCTC | 1 cut(s) | 666 |
| Alw44I | GTGCAC | 1 cut(s) | 249 |
| AlwI | GGATC | 2 cut(s) | 339, 352 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 10 |
| ApaLI | GTGCAC | 1 cut(s) | 249 |
| ApeKI | GCWGC | 4 cut(s) | 4, 7, 10, 157 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| BaeGI | GKGCMC | 1 cut(s) | 253 |
| BamHI | GGATCC | 1 cut(s) | 344 |
| BanI | GGYRCC | 1 cut(s) | 545 |
| BanII | GRGCYC | 1 cut(s) | 619 |
| BauI | CACGAG | 1 cut(s) | 169 |
| BbsI | GAAGAC | 1 cut(s) | 671 |
| Bbv12I | GWGCWC | 1 cut(s) | 253 |
| BbvI | GCAGC | 3 cut(s) | 16, 19, 144 |
| BccI | CCATC | 1 cut(s) | 605 |
| BciVI | GTATCC | 1 cut(s) | 126 |
| BcoDI | GTCTC | 1 cut(s) | 666 |
| BfaI | CTAG | 2 cut(s) | 224, 654 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BfuAI | ACCTGC | 1 cut(s) | 53 |
| BfuI | GTATCC | 1 cut(s) | 126 |
| BglII | AGATCT | 2 cut(s) | 201, 460 |
| BisI | GCNGC | 5 cut(s) | 5, 8, 11, 74, 158 |
| BlsI | GCNGC | 5 cut(s) | 6, 9, 12, 75, 159 |
| BmiI | GGNNCC | 4 cut(s) | 40, 346, 547, 616 |
| BmrI | ACTGGG | 1 cut(s) | 409 |
| BmsI | GCATC | 2 cut(s) | 169, 181 |
| BmuI | ACTGGG | 1 cut(s) | 409 |
| BpiI | GAAGAC | 1 cut(s) | 671 |
| BpmI | CTGGAG | 1 cut(s) | 348 |
| BpuEI | CTTGAG | 2 cut(s) | 190, 284 |
| Bsa29I | ATCGAT | 1 cut(s) | 639 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| BsaJI | CCNNGG | 2 cut(s) | 71, 348 |
| BsaWI | WCCGGW | 1 cut(s) | 443 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 2 cut(s) | 258, 404 |
| BseCI | ATCGAT | 1 cut(s) | 639 |
| BseDI | CCNNGG | 2 cut(s) | 71, 348 |
| BseGI | GGATG | 4 cut(s) | 37, 58, 160, 409 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 2 cut(s) | 258, 404 |
| BseSI | GKGCMC | 1 cut(s) | 253 |
| BseXI | GCAGC | 3 cut(s) | 16, 19, 144 |
| Bsh1236I | CGCG | 1 cut(s) | 73 |
| Bsh1285I | CGRYCG | 1 cut(s) | 643 |
| BshNI | GGYRCC | 1 cut(s) | 545 |
| BshVI | ATCGAT | 1 cut(s) | 639 |
| BsiEI | CGRYCG | 1 cut(s) | 643 |
| BsiHKAI | GWGCWC | 1 cut(s) | 253 |
| BsiSI | CCGG | 1 cut(s) | 444 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 1 cut(s) | 666 |
| BsmI | GAATGC | 2 cut(s) | 420, 661 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| Bsp1286I | GDGCHC | 2 cut(s) | 253, 619 |
| Bsp143I | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| BspACI | CCGC | 4 cut(s) | 71, 73, 80, 139 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspDI | ATCGAT | 1 cut(s) | 639 |
| BspFNI | CGCG | 1 cut(s) | 73 |
| BspHI | TCATGA | 1 cut(s) | 465 |
| BspLI | GGNNCC | 4 cut(s) | 40, 346, 547, 616 |
| BspMI | ACCTGC | 1 cut(s) | 53 |
| BspPI | GGATC | 2 cut(s) | 339, 352 |
| BspT107I | GGYRCC | 1 cut(s) | 545 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrI | ACTGG | 2 cut(s) | 258, 404 |
| BssECI | CCNNGG | 2 cut(s) | 71, 348 |
| BssMI | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| BssSI | CACGAG | 1 cut(s) | 169 |
| Bst2BI | CACGAG | 1 cut(s) | 169 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 677 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 10, 191 |
| BstDEI | CTNAG | 2 cut(s) | 123, 145 |
| BstDSI | CCRYGG | 2 cut(s) | 71, 348 |
| BstF5I | GGATG | 4 cut(s) | 37, 58, 160, 409 |
| BstFNI | CGCG | 1 cut(s) | 73 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstKTI | GATC | 7 cut(s) | 88, 204, 231, 298, 347, 463, 643 |
| BstMAI | GTCTC | 1 cut(s) | 666 |
| BstMBI | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| BstMCI | CGRYCG | 1 cut(s) | 643 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 79, 191, 658 |
| BstNSI | RCATGY | 2 cut(s) | 139, 606 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstSLI | GKGCMC | 1 cut(s) | 253 |
| BstUI | CGCG | 1 cut(s) | 73 |
| BstV1I | GCAGC | 3 cut(s) | 16, 19, 144 |
| BstV2I | GAAGAC | 1 cut(s) | 671 |
| BstX2I | RGATCY | 3 cut(s) | 201, 344, 460 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 49 |
| BstYI | RGATCY | 3 cut(s) | 201, 344, 460 |
| Bsu15I | ATCGAT | 1 cut(s) | 639 |
| BsuI | GTATCC | 1 cut(s) | 126 |
| BsuTUI | ATCGAT | 1 cut(s) | 639 |
| BtgI | CCRYGG | 2 cut(s) | 71, 348 |
| BtsCI | GGATG | 4 cut(s) | 37, 58, 160, 409 |
| BtsI | GCAGTG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 2 cut(s) | 251, 357 |
| BveI | ACCTGC | 1 cut(s) | 53 |
| CaiI | CAGNNNCTG | 1 cut(s) | 10 |
| CciI | TCATGA | 1 cut(s) | 465 |
| CfoI | GCGC | 1 cut(s) | 196 |
| Cfr42I | CCGCGG | 1 cut(s) | 74 |
| ClaI | ATCGAT | 1 cut(s) | 639 |
| CseI | GACGC | 1 cut(s) | 34 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CviAII | CATG | 7 cut(s) | 14, 49, 61, 136, 290, 466, 603 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DdeI | CTNAG | 2 cut(s) | 123, 145 |
| DpnI | GATC | 7 cut(s) | 87, 203, 230, 297, 346, 462, 642 |
| DpnII | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| Eco24I | GRGCYC | 1 cut(s) | 619 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| EcoT38I | GRGCYC | 1 cut(s) | 619 |
| FaeI | CATG | 7 cut(s) | 17, 52, 64, 139, 293, 469, 606 |
| FatI | CATG | 7 cut(s) | 13, 48, 60, 135, 289, 465, 602 |
| FblI | GTMKAC | 1 cut(s) | 23 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 8, 11, 74, 158 |
| FokI | GGATG | 4 cut(s) | 44, 65, 147, 416 |
| FriOI | GRGCYC | 1 cut(s) | 619 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 8, 11, 74, 158 |
| FspBI | CTAG | 2 cut(s) | 224, 654 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GluI | GCNGC | 5 cut(s) | 5, 8, 11, 74, 158 |
| GsuI | CTGGAG | 1 cut(s) | 348 |
| HapII | CCGG | 1 cut(s) | 444 |
| HgaI | GACGC | 1 cut(s) | 34 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1II | CATG | 7 cut(s) | 17, 52, 64, 139, 293, 469, 606 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HincII | GTYRAC | 1 cut(s) | 24 |
| HindII | GTYRAC | 1 cut(s) | 24 |
| HinfI | GANTC | 2 cut(s) | 98, 524 |
| HpaII | CCGG | 1 cut(s) | 444 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 4 cut(s) | 24, 251, 409, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 610 |
| Hpy188III | TCNNGA | 4 cut(s) | 217, 365, 466, 528 |
| Hpy8I | GTNNAC | 4 cut(s) | 24, 251, 409, 441 |
| Hpy99I | CGWCG | 1 cut(s) | 28 |
| HpyAV | CCTTC | 2 cut(s) | 29, 129 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 677 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 13, 48, 160, 251, 521, 602, 661 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 79, 191, 658 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 145 |
| Hsp92II | CATG | 7 cut(s) | 17, 52, 64, 139, 293, 469, 606 |
| HspAI | GCGC | 1 cut(s) | 194 |
| KspI | CCGCGG | 1 cut(s) | 74 |
| Kzo9I | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| LmnI | GCTCC | 4 cut(s) | 141, 338, 367, 614 |
| LpnPI | CCDG | 9 cut(s) | 14, 58, 96, 230, 239, 378, 385, 440, 457 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 19, 144 |
| LweI | GCATC | 2 cut(s) | 169, 181 |
| MaeI | CTAG | 2 cut(s) | 224, 654 |
| MaeIII | GTNAC | 3 cut(s) | 353, 508, 623 |
| MalI | GATC | 7 cut(s) | 87, 203, 230, 297, 346, 462, 642 |
| MboI | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| MboII | GAAGA | 2 cut(s) | 254, 671 |
| MflI | RGATCY | 3 cut(s) | 201, 344, 460 |
| MhlI | GDGCHC | 2 cut(s) | 253, 619 |
| MluCI | AATT | 4 cut(s) | 478, 516, 591, 597 |
| MnlI | CCTC | 5 cut(s) | 49, 142, 175, 213, 536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 2 cut(s) | 10, 73 |
| MspI | CCGG | 1 cut(s) | 444 |
| Mva1269I | GAATGC | 2 cut(s) | 420, 661 |
| MvnI | CGCG | 1 cut(s) | 73 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 79, 191, 658 |
| NdeII | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| NlaIII | CATG | 7 cut(s) | 17, 52, 64, 139, 293, 469, 606 |
| NlaIV | GGNNCC | 4 cut(s) | 40, 346, 547, 616 |
| NspI | RCATGY | 2 cut(s) | 139, 606 |
| PagI | TCATGA | 1 cut(s) | 465 |
| PaqCI | CACCTGC | 1 cut(s) | 53 |
| PctI | GAATGC | 2 cut(s) | 420, 661 |
| PfeI | GAWTC | 2 cut(s) | 98, 524 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 371 |
| PkrI | GCNGC | 5 cut(s) | 6, 9, 12, 75, 159 |
| Ple19I | CGATCG | 1 cut(s) | 643 |
| PspN4I | GGNNCC | 4 cut(s) | 40, 346, 547, 616 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 270, 302 |
| PstNI | CAGNNNCTG | 1 cut(s) | 10 |
| PsuI | RGATCY | 3 cut(s) | 201, 344, 460 |
| PvuI | CGATCG | 1 cut(s) | 643 |
| PvuII | CAGCTG | 1 cut(s) | 10 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SacII | CCGCGG | 1 cut(s) | 74 |
| SalI | GTCGAC | 1 cut(s) | 22 |
| SatI | GCNGC | 5 cut(s) | 5, 8, 11, 74, 158 |
| Sau3AI | GATC | 7 cut(s) | 85, 201, 228, 295, 344, 460, 640 |
| SduI | GDGCHC | 2 cut(s) | 253, 619 |
| SetI | ASST | 7 cut(s) | 12, 47, 60, 146, 153, 335, 416 |
| SfaNI | GCATC | 2 cut(s) | 169, 181 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| Sfr303I | CCGCGG | 1 cut(s) | 74 |
| SgrBI | CCGCGG | 1 cut(s) | 74 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 2 cut(s) | 205, 299 |
| SmoI | CTYRAG | 2 cut(s) | 205, 299 |
| Sse9I | AATT | 4 cut(s) | 478, 516, 591, 597 |
| SsiI | CCGC | 4 cut(s) | 71, 73, 80, 139 |
| SspI | AATATT | 1 cut(s) | 472 |
| SspMI | CTAG | 2 cut(s) | 224, 654 |
| TaaI | ACNGT | 2 cut(s) | 277, 677 |
| TaqI | TCGA | 3 cut(s) | 23, 581, 639 |
| TasI | AATT | 4 cut(s) | 478, 516, 591, 597 |
| TauI | GCSGC | 1 cut(s) | 76 |
| TfiI | GAWTC | 2 cut(s) | 98, 524 |
| TscAI | CASTG | 2 cut(s) | 258, 364 |
| TseI | GCWGC | 4 cut(s) | 4, 7, 10, 157 |
| TspDTI | ATGAA | 4 cut(s) | 48, 278, 464, 482 |
| TspGWI | ACGGA | 1 cut(s) | 337 |
| TspRI | CASTG | 2 cut(s) | 258, 364 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 371 |
| VneI | GTGCAC | 1 cut(s) | 249 |
| XceI | RCATGY | 2 cut(s) | 139, 606 |
| XmiI | GTMKAC | 1 cut(s) | 23 |
| XspI | CTAG | 2 cut(s) | 224, 654 |