Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 250, 970, 1048, 1076 |
| AccB1I | GGYRCC | 2 cut(s) | 805, 1112 |
| AccIII | TCCGGA | 1 cut(s) | 472 |
| AciI | CCGC | 5 cut(s) | 225, 245, 422, 452, 1194 |
| AclWI | GGATC | 1 cut(s) | 290 |
| AcsI | RAATTY | 2 cut(s) | 316, 412 |
| AdeI | CACNNNGTG | 1 cut(s) | 890 |
| AfaI | GTAC | 3 cut(s) | 274, 645, 1158 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 634, 715, 1049, 1085 |
| AflII | CTTAAG | 1 cut(s) | 1094 |
| AflIII | ACRYGT | 2 cut(s) | 646, 1130 |
| AhlI | ACTAGT | 2 cut(s) | 566, 1222 |
| AjiI | CACGTC | 1 cut(s) | 1133 |
| AleI | CACNNNNGTG | 1 cut(s) | 1178 |
| AluBI | AGCT | 5 cut(s) | 146, 400, 431, 620, 843 |
| AluI | AGCT | 5 cut(s) | 146, 400, 431, 620, 843 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 94, 743 |
| AlwI | GGATC | 1 cut(s) | 290 |
| Aor13HI | TCCGGA | 1 cut(s) | 472 |
| AoxI | GGCC | 1 cut(s) | 311 |
| ApeKI | GCWGC | 2 cut(s) | 976, 1216 |
| ApoI | RAATTY | 2 cut(s) | 316, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 414 |
| AspS9I | GGNCC | 1 cut(s) | 341 |
| AsuC2I | CCSGG | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 2 cut(s) | 139, 1111 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| BanI | GGYRCC | 2 cut(s) | 805, 1112 |
| BauI | CACGAG | 1 cut(s) | 888 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 988, 1228 |
| BccI | CCATC | 6 cut(s) | 90, 249, 367, 374, 713, 1103 |
| BceAI | ACGGC | 2 cut(s) | 125, 1051 |
| BclI | TGATCA | 1 cut(s) | 1120 |
| BcnI | CCSGG | 1 cut(s) | 117 |
| BcoDI | GTCTC | 2 cut(s) | 94, 743 |
| BcuI | ACTAGT | 2 cut(s) | 566, 1222 |
| BfaI | CTAG | 8 cut(s) | 567, 630, 710, 840, 851, 878, 1044, 1223 |
| BfmI | CTRYAG | 1 cut(s) | 1083 |
| BfrI | CTTAAG | 1 cut(s) | 1094 |
| BfuAI | ACCTGC | 4 cut(s) | 250, 970, 1048, 1076 |
| BisI | GCNGC | 3 cut(s) | 225, 977, 1217 |
| BlsI | GCNGC | 3 cut(s) | 226, 978, 1218 |
| Bme1390I | CCNGG | 1 cut(s) | 117 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmgBI | CACGTC | 1 cut(s) | 1133 |
| BmgT120I | GGNCC | 1 cut(s) | 341 |
| BmiI | GGNNCC | 3 cut(s) | 343, 807, 1114 |
| BmrFI | CCNGG | 1 cut(s) | 117 |
| BmsI | GCATC | 2 cut(s) | 121, 1153 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1063, 1095 |
| BpuMI | CCSGG | 1 cut(s) | 117 |
| Bsa29I | ATCGAT | 1 cut(s) | 1107 |
| BsaI | GGTCTC | 1 cut(s) | 743 |
| BsaJI | CCNNGG | 4 cut(s) | 116, 299, 308, 1067 |
| BsaWI | WCCGGW | 3 cut(s) | 472, 556, 820 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 670, 700 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 634, 715, 1049, 1085 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| BseAI | TCCGGA | 1 cut(s) | 472 |
| BseCI | ATCGAT | 1 cut(s) | 1107 |
| BseDI | CCNNGG | 4 cut(s) | 116, 299, 308, 1067 |
| BseGI | GGATG | 7 cut(s) | 101, 112, 298, 385, 430, 553, 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 634, 715, 1049, 1085 |
| BseMII | CTCAG | 1 cut(s) | 706 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseRI | GAGGAG | 4 cut(s) | 47, 339, 761, 1068 |
| BseXI | GCAGC | 2 cut(s) | 988, 1228 |
| BsgI | GTGCAG | 1 cut(s) | 995 |
| BshFI | GGCC | 1 cut(s) | 313 |
| BshNI | GGYRCC | 2 cut(s) | 805, 1112 |
| BshVI | ATCGAT | 1 cut(s) | 1107 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| BslFI | GGGAC | 1 cut(s) | 327 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 634, 715, 1049, 1085 |
| BsmAI | GTCTC | 2 cut(s) | 94, 743 |
| BsmFI | GGGAC | 1 cut(s) | 327 |
| BsmI | GAATGC | 1 cut(s) | 1009 |
| BsnI | GGCC | 1 cut(s) | 313 |
| Bso31I | GGTCTC | 1 cut(s) | 743 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 472 |
| Bsp143I | GATC | 3 cut(s) | 295, 367, 1120 |
| BspACI | CCGC | 5 cut(s) | 225, 245, 422, 452, 1194 |
| BspANI | GGCC | 1 cut(s) | 313 |
| BspCNI | CTCAG | 1 cut(s) | 705 |
| BspDI | ATCGAT | 1 cut(s) | 1107 |
| BspEI | TCCGGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 3 cut(s) | 343, 807, 1114 |
| BspMAI | CTGCAG | 1 cut(s) | 1087 |
| BspMI | ACCTGC | 4 cut(s) | 250, 970, 1048, 1076 |
| BspPI | GGATC | 1 cut(s) | 290 |
| BspQI | GCTCTTC | 1 cut(s) | 580 |
| BspT107I | GGYRCC | 2 cut(s) | 805, 1112 |
| BspTI | CTTAAG | 1 cut(s) | 1094 |
| BspTNI | GGTCTC | 1 cut(s) | 743 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssECI | CCNNGG | 4 cut(s) | 116, 299, 308, 1067 |
| BssMI | GATC | 3 cut(s) | 295, 367, 1120 |
| BssSI | CACGAG | 1 cut(s) | 888 |
| BssT1I | CCWWGG | 2 cut(s) | 299, 308 |
| Bst2BI | CACGAG | 1 cut(s) | 888 |
| Bst4CI | ACNGT | 2 cut(s) | 272, 1177 |
| Bst6I | CTCTTC | 3 cut(s) | 169, 580, 738 |
| BstAFI | CTTAAG | 1 cut(s) | 1094 |
| BstC8I | GCNNGC | 4 cut(s) | 63, 84, 861, 1192 |
| BstDEI | CTNAG | 2 cut(s) | 251, 692 |
| BstDSI | CCRYGG | 1 cut(s) | 1067 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 713, 1083 |
| BstF5I | GGATG | 7 cut(s) | 101, 112, 298, 385, 430, 553, 724 |
| BstKTI | GATC | 3 cut(s) | 298, 370, 1123 |
| BstMAI | GTCTC | 2 cut(s) | 94, 743 |
| BstMBI | GATC | 3 cut(s) | 295, 367, 1120 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 83, 88, 428, 856, 1063 |
| BstNSI | RCATGY | 3 cut(s) | 65, 650, 1188 |
| BstSCI | CCNGG | 1 cut(s) | 115 |
| BstSFI | CTRYAG | 1 cut(s) | 1083 |
| BstV1I | GCAGC | 2 cut(s) | 988, 1228 |
| Bsu15I | ATCGAT | 1 cut(s) | 1107 |
| BsuRI | GGCC | 1 cut(s) | 313 |
| BsuTUI | ATCGAT | 1 cut(s) | 1107 |
| BtgI | CCRYGG | 1 cut(s) | 1067 |
| BtrI | CACGTC | 1 cut(s) | 1133 |
| BtsCI | GGATG | 7 cut(s) | 101, 112, 298, 385, 430, 553, 724 |
| BtsIMutI | CAGTG | 2 cut(s) | 240, 1205 |
| BveI | ACCTGC | 4 cut(s) | 250, 970, 1048, 1076 |
| Cac8I | GCNNGC | 4 cut(s) | 63, 84, 861, 1192 |
| Cfr13I | GGNCC | 1 cut(s) | 341 |
| ClaI | ATCGAT | 1 cut(s) | 1107 |
| Csp6I | GTAC | 3 cut(s) | 273, 644, 1157 |
| CviAII | CATG | 6 cut(s) | 6, 62, 194, 647, 761, 1185 |
| CviQI | GTAC | 3 cut(s) | 273, 644, 1157 |
| DdeI | CTNAG | 2 cut(s) | 251, 692 |
| DpnI | GATC | 3 cut(s) | 297, 369, 1122 |
| DpnII | GATC | 3 cut(s) | 295, 367, 1120 |
| DraI | TTTAAA | 2 cut(s) | 142, 174 |
| DraIII | CACNNNGTG | 1 cut(s) | 890 |
| Eam1104I | CTCTTC | 3 cut(s) | 169, 580, 738 |
| EarI | CTCTTC | 3 cut(s) | 169, 580, 738 |
| Eco130I | CCWWGG | 2 cut(s) | 299, 308 |
| Eco31I | GGTCTC | 1 cut(s) | 743 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 713, 1083 |
| EcoT14I | CCWWGG | 2 cut(s) | 299, 308 |
| ErhI | CCWWGG | 2 cut(s) | 299, 308 |
| FaeI | CATG | 6 cut(s) | 9, 65, 197, 650, 764, 1188 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 234, 266 |
| FaqI | GGGAC | 1 cut(s) | 327 |
| FatI | CATG | 6 cut(s) | 5, 61, 193, 646, 760, 1184 |
| FauI | CCCGC | 1 cut(s) | 238 |
| FauNDI | CATATG | 1 cut(s) | 1015 |
| FbaI | TGATCA | 1 cut(s) | 1120 |
| Fnu4HI | GCNGC | 3 cut(s) | 225, 977, 1217 |
| FokI | GGATG | 7 cut(s) | 99, 108, 305, 392, 437, 540, 731 |
| Fsp4HI | GCNGC | 3 cut(s) | 225, 977, 1217 |
| FspBI | CTAG | 8 cut(s) | 567, 630, 710, 840, 851, 878, 1044, 1223 |
| GluI | GCNGC | 3 cut(s) | 225, 977, 1217 |
| HaeIII | GGCC | 1 cut(s) | 313 |
| HapII | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| Hin1II | CATG | 6 cut(s) | 9, 65, 197, 650, 764, 1188 |
| HindIII | AAGCTT | 2 cut(s) | 144, 429 |
| HinfI | GANTC | 5 cut(s) | 130, 304, 595, 705, 1072 |
| HpaII | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| HphI | GGTGA | 2 cut(s) | 139, 1111 |
| Hpy166II | GTNNAC | 1 cut(s) | 513 |
| Hpy188I | TCNGA | 8 cut(s) | 53, 285, 372, 409, 594, 695, 742, 1207 |
| Hpy188III | TCNNGA | 1 cut(s) | 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 513 |
| Hpy99I | CGWCG | 1 cut(s) | 1137 |
| HpyAV | CCTTC | 1 cut(s) | 955 |
| HpyCH4III | ACNGT | 2 cut(s) | 272, 1177 |
| HpyCH4IV | ACGT | 1 cut(s) | 1132 |
| HpyCH4V | TGCA | 8 cut(s) | 61, 527, 829, 976, 1009, 1085, 1166, 1216 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 83, 88, 428, 856, 1063 |
| HpyF3I | CTNAG | 2 cut(s) | 251, 692 |
| HpySE526I | ACGT | 1 cut(s) | 1132 |
| Hsp92II | CATG | 6 cut(s) | 9, 65, 197, 650, 764, 1188 |
| Kpn2I | TCCGGA | 1 cut(s) | 472 |
| Ksp22I | TGATCA | 1 cut(s) | 1120 |
| Kzo9I | GATC | 3 cut(s) | 295, 367, 1120 |
| LguI | GCTCTTC | 1 cut(s) | 580 |
| LmnI | GCTCC | 4 cut(s) | 10, 29, 449, 625 |
| Lsp1109I | GCAGC | 2 cut(s) | 988, 1228 |
| LweI | GCATC | 2 cut(s) | 121, 1153 |
| MaeI | CTAG | 8 cut(s) | 567, 630, 710, 840, 851, 878, 1044, 1223 |
| MaeII | ACGT | 1 cut(s) | 1132 |
| MaeIII | GTNAC | 4 cut(s) | 237, 734, 880, 1036 |
| MalI | GATC | 3 cut(s) | 297, 369, 1122 |
| MboI | GATC | 3 cut(s) | 295, 367, 1120 |
| MboII | GAAGA | 4 cut(s) | 156, 567, 714, 755 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| MlyI | GAGTC | 3 cut(s) | 139, 604, 1081 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| MroI | TCCGGA | 1 cut(s) | 472 |
| MroXI | GAANNNNTTC | 1 cut(s) | 414 |
| MseI | TTAA | 5 cut(s) | 141, 173, 639, 1062, 1095 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1014, 1178 |
| MspCI | CTTAAG | 1 cut(s) | 1094 |
| MspI | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| MspR9I | CCNGG | 1 cut(s) | 117 |
| Mva1269I | GAATGC | 1 cut(s) | 1009 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 83, 88, 428, 856, 1063 |
| NciI | CCSGG | 1 cut(s) | 117 |
| NdeI | CATATG | 1 cut(s) | 1015 |
| NdeII | GATC | 3 cut(s) | 295, 367, 1120 |
| NlaIII | CATG | 6 cut(s) | 9, 65, 197, 650, 764, 1188 |
| NlaIV | GGNNCC | 3 cut(s) | 343, 807, 1114 |
| NmuCI | GTSAC | 2 cut(s) | 880, 1036 |
| NspI | RCATGY | 3 cut(s) | 65, 650, 1188 |
| OliI | CACNNNNGTG | 1 cut(s) | 1178 |
| PaeI | GCATGC | 1 cut(s) | 65 |
| PciI | ACATGT | 1 cut(s) | 646 |
| PciSI | GCTCTTC | 1 cut(s) | 580 |
| PctI | GAATGC | 1 cut(s) | 1009 |
| PdmI | GAANNNNTTC | 1 cut(s) | 414 |
| PfeI | GAWTC | 2 cut(s) | 304, 705 |
| PflFI | GACNNNGTC | 1 cut(s) | 18 |
| PkrI | GCNGC | 3 cut(s) | 226, 978, 1218 |
| PleI | GAGTC | 3 cut(s) | 138, 603, 1080 |
| PpsI | GAGTC | 3 cut(s) | 138, 603, 1080 |
| PscI | ACATGT | 1 cut(s) | 646 |
| PspN4I | GGNNCC | 3 cut(s) | 343, 807, 1114 |
| PspPI | GGNCC | 1 cut(s) | 341 |
| PstI | CTGCAG | 1 cut(s) | 1087 |
| PsyI | GACNNNGTC | 1 cut(s) | 18 |
| RsaI | GTAC | 3 cut(s) | 274, 645, 1158 |
| RsaNI | GTAC | 3 cut(s) | 273, 644, 1157 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1014, 1178 |
| SapI | GCTCTTC | 1 cut(s) | 580 |
| SaqAI | TTAA | 5 cut(s) | 141, 173, 639, 1062, 1095 |
| SatI | GCNGC | 3 cut(s) | 225, 977, 1217 |
| Sau3AI | GATC | 3 cut(s) | 295, 367, 1120 |
| Sau96I | GGNCC | 1 cut(s) | 341 |
| SbfI | CCTGCAGG | 1 cut(s) | 1087 |
| SchI | GAGTC | 3 cut(s) | 139, 604, 1081 |
| ScrFI | CCNGG | 1 cut(s) | 117 |
| SdaI | CCTGCAGG | 1 cut(s) | 1087 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfaNI | GCATC | 2 cut(s) | 121, 1153 |
| SfcI | CTRYAG | 1 cut(s) | 1083 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1014, 1178 |
| SmlI | CTYRAG | 1 cut(s) | 1094 |
| SmoI | CTYRAG | 1 cut(s) | 1094 |
| SpeI | ACTAGT | 2 cut(s) | 566, 1222 |
| SphI | GCATGC | 1 cut(s) | 65 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1087 |
| Sse9I | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| SsiI | CCGC | 5 cut(s) | 225, 245, 422, 452, 1194 |
| SspI | AATATT | 1 cut(s) | 219 |
| SspMI | CTAG | 8 cut(s) | 567, 630, 710, 840, 851, 878, 1044, 1223 |
| StyD4I | CCNGG | 1 cut(s) | 115 |
| StyI | CCWWGG | 2 cut(s) | 299, 308 |
| TaaI | ACNGT | 2 cut(s) | 272, 1177 |
| TaiI | ACGT | 1 cut(s) | 1135 |
| TaqI | TCGA | 1 cut(s) | 1107 |
| TasI | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| TauI | GCSGC | 1 cut(s) | 227 |
| TfiI | GAWTC | 2 cut(s) | 304, 705 |
| Tru1I | TTAA | 5 cut(s) | 141, 173, 639, 1062, 1095 |
| Tru9I | TTAA | 5 cut(s) | 141, 173, 639, 1062, 1095 |
| TscAI | CASTG | 2 cut(s) | 240, 1205 |
| TseFI | GTSAC | 2 cut(s) | 880, 1036 |
| TseI | GCWGC | 2 cut(s) | 976, 1216 |
| Tsp45I | GTSAC | 2 cut(s) | 880, 1036 |
| TspDTI | ATGAA | 3 cut(s) | 441, 515, 1002 |
| TspRI | CASTG | 2 cut(s) | 240, 1205 |
| Tth111I | GACNNNGTC | 1 cut(s) | 18 |
| Vha464I | CTTAAG | 1 cut(s) | 1094 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 713, 1083 |
| XapI | RAATTY | 2 cut(s) | 316, 412 |
| XceI | RCATGY | 3 cut(s) | 65, 650, 1188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 414 |
| XspI | CTAG | 8 cut(s) | 567, 630, 710, 840, 851, 878, 1044, 1223 |