Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 136 |
| AciI | CCGC | 2 cut(s) | 356, 386 |
| AclWI | GGATC | 1 cut(s) | 758 |
| AcuI | CTGAAG | 1 cut(s) | 629 |
| AcyI | GRCGYC | 1 cut(s) | 724 |
| AfaI | GTAC | 2 cut(s) | 126, 736 |
| AgsI | TTSAA | 2 cut(s) | 401, 538 |
| AluBI | AGCT | 4 cut(s) | 280, 406, 554, 636 |
| AluI | AGCT | 4 cut(s) | 280, 406, 554, 636 |
| Alw21I | GWGCWC | 2 cut(s) | 408, 708 |
| Alw26I | GTCTC | 2 cut(s) | 39, 133 |
| AlwI | GGATC | 1 cut(s) | 758 |
| ApeKI | GCWGC | 2 cut(s) | 152, 633 |
| AxyI | CCTNAGG | 1 cut(s) | 24 |
| BanII | GRGCYC | 1 cut(s) | 408 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 643, 675 |
| Bbv12I | GWGCWC | 2 cut(s) | 408, 708 |
| BbvI | GCAGC | 2 cut(s) | 139, 645 |
| BccI | CCATC | 4 cut(s) | 417, 558, 673, 686 |
| BcoDI | GTCTC | 2 cut(s) | 39, 133 |
| BfmI | CTRYAG | 1 cut(s) | 773 |
| BfuAI | ACCTGC | 1 cut(s) | 136 |
| BisI | GCNGC | 3 cut(s) | 153, 356, 634 |
| BlsI | GCNGC | 3 cut(s) | 154, 357, 635 |
| BmsI | GCATC | 1 cut(s) | 693 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 56, 88, 312, 344 |
| BsaHI | GRCGYC | 1 cut(s) | 724 |
| BsaI | GGTCTC | 1 cut(s) | 39 |
| BsaJI | CCNNGG | 1 cut(s) | 767 |
| Bse1I | ACTGG | 1 cut(s) | 35 |
| Bse21I | CCTNAGG | 1 cut(s) | 24 |
| Bse3DI | GCAATG | 1 cut(s) | 628 |
| BseDI | CCNNGG | 1 cut(s) | 767 |
| BseGI | GGATG | 4 cut(s) | 484, 569, 697, 706 |
| BseMI | GCAATG | 1 cut(s) | 628 |
| BseMII | CTCAG | 1 cut(s) | 38 |
| BseNI | ACTGG | 1 cut(s) | 35 |
| BseRI | GAGGAG | 1 cut(s) | 12 |
| BseXI | GCAGC | 2 cut(s) | 139, 645 |
| BsiHKAI | GWGCWC | 2 cut(s) | 408, 708 |
| BslFI | GGGAC | 1 cut(s) | 754 |
| BsmAI | GTCTC | 2 cut(s) | 39, 133 |
| BsmFI | GGGAC | 1 cut(s) | 754 |
| BsmI | GAATGC | 2 cut(s) | 465, 717 |
| Bso31I | GGTCTC | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 2 cut(s) | 408, 708 |
| Bsp143I | GATC | 2 cut(s) | 481, 763 |
| BspACI | CCGC | 2 cut(s) | 356, 386 |
| BspCNI | CTCAG | 1 cut(s) | 37 |
| BspHI | TCATGA | 1 cut(s) | 366 |
| BspMI | ACCTGC | 1 cut(s) | 136 |
| BspPI | GGATC | 1 cut(s) | 758 |
| BspQI | GCTCTTC | 1 cut(s) | 664 |
| BspTNI | GGTCTC | 1 cut(s) | 39 |
| BsrDI | GCAATG | 1 cut(s) | 628 |
| BsrI | ACTGG | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 767 |
| BssMI | GATC | 2 cut(s) | 481, 763 |
| BssNI | GRCGYC | 1 cut(s) | 724 |
| BssT1I | CCWWGG | 1 cut(s) | 767 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 2 cut(s) | 313, 664 |
| BstACI | GRCGYC | 1 cut(s) | 724 |
| BstC8I | GCNNGC | 1 cut(s) | 715 |
| BstDEI | CTNAG | 5 cut(s) | 24, 305, 423, 495, 502 |
| BstF5I | GGATG | 4 cut(s) | 484, 569, 697, 706 |
| BstKTI | GATC | 2 cut(s) | 484, 766 |
| BstMAI | GTCTC | 2 cut(s) | 39, 133 |
| BstMBI | GATC | 2 cut(s) | 481, 763 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 551 |
| BstSFI | CTRYAG | 1 cut(s) | 773 |
| BstV1I | GCAGC | 2 cut(s) | 139, 645 |
| Bsu36I | CCTNAGG | 1 cut(s) | 24 |
| BtsCI | GGATG | 4 cut(s) | 484, 569, 697, 706 |
| BtsIMutI | CAGTG | 1 cut(s) | 216 |
| BveI | ACCTGC | 1 cut(s) | 136 |
| Cac8I | GCNNGC | 1 cut(s) | 715 |
| CciI | TCATGA | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 713 |
| Csp6I | GTAC | 2 cut(s) | 125, 735 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 196, 231 |
| CviAII | CATG | 7 cut(s) | 185, 367, 511, 547, 688, 728, 761 |
| CviQI | GTAC | 2 cut(s) | 125, 735 |
| DdeI | CTNAG | 5 cut(s) | 24, 305, 423, 495, 502 |
| DpnI | GATC | 2 cut(s) | 483, 765 |
| DpnII | GATC | 2 cut(s) | 481, 763 |
| DraI | TTTAAA | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 2 cut(s) | 313, 664 |
| EarI | CTCTTC | 2 cut(s) | 313, 664 |
| Ecl136II | GAGCTC | 1 cut(s) | 406 |
| Eco130I | CCWWGG | 1 cut(s) | 767 |
| Eco24I | GRGCYC | 1 cut(s) | 408 |
| Eco31I | GGTCTC | 1 cut(s) | 39 |
| Eco53kI | GAGCTC | 1 cut(s) | 406 |
| Eco57I | CTGAAG | 1 cut(s) | 629 |
| Eco81I | CCTNAGG | 1 cut(s) | 24 |
| EcoICRI | GAGCTC | 1 cut(s) | 406 |
| EcoT14I | CCWWGG | 1 cut(s) | 767 |
| EcoT22I | ATGCAT | 1 cut(s) | 465 |
| EcoT38I | GRGCYC | 1 cut(s) | 408 |
| ErhI | CCWWGG | 1 cut(s) | 767 |
| FaeI | CATG | 7 cut(s) | 188, 370, 514, 550, 691, 731, 764 |
| FaqI | GGGAC | 1 cut(s) | 754 |
| FatI | CATG | 7 cut(s) | 184, 366, 510, 546, 687, 727, 760 |
| FauNDI | CATATG | 1 cut(s) | 135 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 356, 634 |
| FokI | GGATG | 4 cut(s) | 491, 576, 704, 713 |
| FriOI | GRGCYC | 1 cut(s) | 408 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 356, 634 |
| GluI | GCNGC | 3 cut(s) | 153, 356, 634 |
| HgaI | GACGC | 1 cut(s) | 713 |
| Hin1I | GRCGYC | 1 cut(s) | 724 |
| Hin1II | CATG | 7 cut(s) | 188, 370, 514, 550, 691, 731, 764 |
| HindIII | AAGCTT | 1 cut(s) | 278 |
| HinfI | GANTC | 2 cut(s) | 325, 587 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 491 |
| Hpy188I | TCNGA | 2 cut(s) | 232, 609 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 44, 367, 401 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 491 |
| HpyAV | CCTTC | 2 cut(s) | 389, 604 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 4 cut(s) | 94, 155, 463, 633 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 551 |
| HpyF3I | CTNAG | 5 cut(s) | 24, 305, 423, 495, 502 |
| Hsp92I | GRCGYC | 1 cut(s) | 724 |
| Hsp92II | CATG | 7 cut(s) | 188, 370, 514, 550, 691, 731, 764 |
| Kzo9I | GATC | 2 cut(s) | 481, 763 |
| LguI | GCTCTTC | 1 cut(s) | 664 |
| LmnI | GCTCC | 1 cut(s) | 411 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 645 |
| LweI | GCATC | 1 cut(s) | 693 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MalI | GATC | 2 cut(s) | 483, 765 |
| MboI | GATC | 2 cut(s) | 481, 763 |
| MboII | GAAGA | 3 cut(s) | 330, 374, 651 |
| MhlI | GDGCHC | 2 cut(s) | 408, 708 |
| MluCI | AATT | 4 cut(s) | 84, 299, 370, 396 |
| MnlI | CCTC | 7 cut(s) | 33, 82, 431, 439, 449, 636, 637 |
| Mph1103I | ATGCAT | 1 cut(s) | 465 |
| MseI | TTAA | 2 cut(s) | 53, 333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| Mva1269I | GAATGC | 2 cut(s) | 465, 717 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 551 |
| NdeI | CATATG | 1 cut(s) | 135 |
| NdeII | GATC | 2 cut(s) | 481, 763 |
| NlaIII | CATG | 7 cut(s) | 188, 370, 514, 550, 691, 731, 764 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| NsiI | ATGCAT | 1 cut(s) | 465 |
| PagI | TCATGA | 1 cut(s) | 366 |
| PciSI | GCTCTTC | 1 cut(s) | 664 |
| PctI | GAATGC | 2 cut(s) | 465, 717 |
| PfeI | GAWTC | 2 cut(s) | 325, 587 |
| PkrI | GCNGC | 3 cut(s) | 154, 357, 635 |
| Psp124BI | GAGCTC | 1 cut(s) | 408 |
| RsaI | GTAC | 2 cut(s) | 126, 736 |
| RsaNI | GTAC | 2 cut(s) | 125, 735 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| SacI | GAGCTC | 1 cut(s) | 408 |
| SapI | GCTCTTC | 1 cut(s) | 664 |
| SaqAI | TTAA | 2 cut(s) | 53, 333 |
| SatI | GCNGC | 3 cut(s) | 153, 356, 634 |
| Sau3AI | GATC | 2 cut(s) | 481, 763 |
| SduI | GDGCHC | 2 cut(s) | 408, 708 |
| SfaNI | GCATC | 1 cut(s) | 693 |
| SfcI | CTRYAG | 1 cut(s) | 773 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| Sse9I | AATT | 4 cut(s) | 84, 299, 370, 396 |
| SsiI | CCGC | 2 cut(s) | 356, 386 |
| SspI | AATATT | 1 cut(s) | 754 |
| SstI | GAGCTC | 1 cut(s) | 408 |
| StyI | CCWWGG | 1 cut(s) | 767 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TasI | AATT | 4 cut(s) | 84, 299, 370, 396 |
| TauI | GCSGC | 1 cut(s) | 358 |
| TfiI | GAWTC | 2 cut(s) | 325, 587 |
| Tru1I | TTAA | 2 cut(s) | 53, 333 |
| Tru9I | TTAA | 2 cut(s) | 53, 333 |
| TscAI | CASTG | 1 cut(s) | 216 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 2 cut(s) | 152, 633 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 1 cut(s) | 383 |
| TspGWI | ACGGA | 1 cut(s) | 458 |
| TspRI | CASTG | 1 cut(s) | 216 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 672 |
| Zsp2I | ATGCAT | 1 cut(s) | 465 |