ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1511 |
| Acc36I | ACCTGC | 3 cut(s) | 703, 1085, 1511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1239 |
| AccBSI | CCGCTC | 2 cut(s) | 285, 1336 |
| AccI | GTMKAC | 1 cut(s) | 1528 |
| AccII | CGCG | 1 cut(s) | 115 |
| AccIII | TCCGGA | 1 cut(s) | 949 |
| AciI | CCGC | 8 cut(s) | 285, 296, 302, 386, 958, 1030, 1118, 1336 |
| AclWI | GGATC | 5 cut(s) | 287, 814, 941, 954, 1600 |
| AcsI | RAATTY | 1 cut(s) | 326 |
| AcuI | CTGAAG | 1 cut(s) | 738 |
| AcvI | CACGTG | 1 cut(s) | 704 |
| AdeI | CACNNNGTG | 1 cut(s) | 704 |
| AfaI | GTAC | 3 cut(s) | 848, 1180, 1286 |
| AfeI | AGCGCT | 1 cut(s) | 966 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 338, 648, 1239 |
| AflIII | ACRYGT | 3 cut(s) | 113, 703, 1534 |
| AgsI | TTSAA | 6 cut(s) | 81, 322, 352, 454, 752, 1551 |
| AjnI | CCWGG | 1 cut(s) | 735 |
| Alw21I | GWGCWC | 2 cut(s) | 873, 987 |
| Alw26I | GTCTC | 4 cut(s) | 78, 144, 306, 826 |
| Alw44I | GTGCAC | 1 cut(s) | 869 |
| AlwI | GGATC | 5 cut(s) | 287, 814, 941, 954, 1600 |
| Ama87I | CYCGRG | 1 cut(s) | 1563 |
| Aor13HI | TCCGGA | 1 cut(s) | 949 |
| Aor51HI | AGCGCT | 1 cut(s) | 966 |
| AoxI | GGCC | 5 cut(s) | 174, 572, 580, 639, 927 |
| ApaLI | GTGCAC | 1 cut(s) | 869 |
| ApeKI | GCWGC | 6 cut(s) | 355, 614, 617, 713, 1037, 1402 |
| ApoI | RAATTY | 1 cut(s) | 326 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1552, 1584 |
| AspLEI | GCGC | 1 cut(s) | 967 |
| AspS9I | GGNCC | 3 cut(s) | 581, 692, 1501 |
| AsuC2I | CCSGG | 1 cut(s) | 584 |
| AsuHPI | GGTGA | 3 cut(s) | 302, 769, 1088 |
| AsuII | TTCGAA | 1 cut(s) | 1322 |
| AvaI | CYCGRG | 1 cut(s) | 1563 |
| AvaII | GGWCC | 2 cut(s) | 692, 1501 |
| BaeGI | GKGCMC | 1 cut(s) | 873 |
| BamHI | GGATCC | 1 cut(s) | 946 |
| BanII | GRGCYC | 1 cut(s) | 987 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1424, 1456 |
| BauI | CACGAG | 1 cut(s) | 40 |
| BbrPI | CACGTG | 1 cut(s) | 704 |
| BbsI | GAAGAC | 2 cut(s) | 270, 1473 |
| Bbv12I | GWGCWC | 2 cut(s) | 873, 987 |
| BbvI | GCAGC | 6 cut(s) | 367, 601, 629, 700, 1049, 1389 |
| BccI | CCATC | 5 cut(s) | 368, 671, 1233, 1273, 1357 |
| BceAI | ACGGC | 1 cut(s) | 577 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1381, 1415 |
| BciT130I | CCWGG | 1 cut(s) | 737 |
| BciVI | GTATCC | 1 cut(s) | 1222 |
| BclI | TGATCA | 1 cut(s) | 420 |
| BcnI | CCSGG | 1 cut(s) | 584 |
| BcoDI | GTCTC | 4 cut(s) | 78, 144, 306, 826 |
| BfaI | CTAG | 3 cut(s) | 32, 404, 803 |
| BfmI | CTRYAG | 2 cut(s) | 615, 941 |
| BfoI | RGCGCY | 1 cut(s) | 968 |
| BfuAI | ACCTGC | 3 cut(s) | 703, 1085, 1511 |
| BfuI | GTATCC | 1 cut(s) | 1222 |
| BisI | GCNGC | 7 cut(s) | 356, 615, 618, 714, 1038, 1119, 1403 |
| BlsI | GCNGC | 7 cut(s) | 357, 616, 619, 715, 1039, 1120, 1404 |
| BmcAI | AGTACT | 1 cut(s) | 1286 |
| Bme1390I | CCNGG | 2 cut(s) | 584, 737 |
| Bme18I | GGWCC | 2 cut(s) | 692, 1501 |
| BmeT110I | CYCGRG | 1 cut(s) | 1563 |
| BmgT120I | GGNCC | 3 cut(s) | 581, 692, 1501 |
| BmiI | GGNNCC | 3 cut(s) | 526, 948, 1502 |
| BmrFI | CCNGG | 2 cut(s) | 584, 737 |
| BmrI | ACTGGG | 1 cut(s) | 1480 |
| BmsI | GCATC | 4 cut(s) | 601, 1044, 1237, 1319 |
| BmuI | ACTGGG | 1 cut(s) | 1480 |
| BpiI | GAAGAC | 2 cut(s) | 270, 1473 |
| BpmI | CTGGAG | 1 cut(s) | 1608 |
| Bpu10I | CCTNAGC | 1 cut(s) | 986 |
| Bpu14I | TTCGAA | 1 cut(s) | 1322 |
| BpuEI | CTTGAG | 2 cut(s) | 443, 879 |
| BpuMI | CCSGG | 1 cut(s) | 584 |
| Bsa29I | ATCGAT | 1 cut(s) | 372 |
| BsaAI | YACGTR | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 3 cut(s) | 1068, 1487, 1496 |
| BsaWI | WCCGGW | 2 cut(s) | 949, 1156 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 181, 211, 468, 498, 578, 608, 1234, 1264 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 338, 648, 1239 |
| Bse1I | ACTGG | 4 cut(s) | 854, 1095, 1233, 1475 |
| Bse3DI | GCAATG | 3 cut(s) | 1032, 1047, 1397 |
| BseAI | TCCGGA | 1 cut(s) | 949 |
| BseBI | CCWGG | 1 cut(s) | 737 |
| BseCI | ATCGAT | 1 cut(s) | 372 |
| BseDI | CCNNGG | 3 cut(s) | 1068, 1487, 1496 |
| BseGI | GGATG | 6 cut(s) | 27, 787, 976, 1146, 1244, 1483 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 338, 648, 1239 |
| BseMI | GCAATG | 3 cut(s) | 1032, 1047, 1397 |
| BseMII | CTCAG | 5 cut(s) | 422, 445, 555, 648, 1000 |
| BseNI | ACTGG | 4 cut(s) | 854, 1095, 1233, 1475 |
| BseRI | GAGGAG | 7 cut(s) | 202, 1097, 1343, 1346, 1357, 1433, 1475 |
| BseSI | GKGCMC | 1 cut(s) | 873 |
| BseXI | GCAGC | 6 cut(s) | 367, 601, 629, 700, 1049, 1389 |
| BsgI | GTGCAG | 1 cut(s) | 681 |
| Bsh1236I | CGCG | 1 cut(s) | 115 |
| BshFI | GGCC | 5 cut(s) | 176, 574, 582, 641, 929 |
| BshVI | ATCGAT | 1 cut(s) | 372 |
| BsiHKAI | GWGCWC | 2 cut(s) | 873, 987 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1563 |
| BsiSI | CCGG | 4 cut(s) | 584, 599, 950, 1157 |
| BslFI | GGGAC | 2 cut(s) | 114, 1514 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 338, 648, 1239 |
| BsmAI | GTCTC | 4 cut(s) | 78, 144, 306, 826 |
| BsmBI | CGTCTC | 1 cut(s) | 78 |
| BsmFI | GGGAC | 2 cut(s) | 114, 1514 |
| BsnI | GGCC | 5 cut(s) | 176, 574, 582, 641, 929 |
| BsoBI | CYCGRG | 1 cut(s) | 1563 |
| Bsp119I | TTCGAA | 1 cut(s) | 1322 |
| Bsp1286I | GDGCHC | 2 cut(s) | 873, 987 |
| Bsp13I | TCCGGA | 1 cut(s) | 949 |
| Bsp143I | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| Bsp19I | CCATGG | 1 cut(s) | 1068 |
| BspACI | CCGC | 8 cut(s) | 285, 296, 302, 386, 958, 1030, 1118, 1336 |
| BspANI | GGCC | 5 cut(s) | 176, 574, 582, 641, 929 |
| BspCNI | CTCAG | 5 cut(s) | 421, 444, 556, 649, 999 |
| BspDI | ATCGAT | 1 cut(s) | 372 |
| BspEI | TCCGGA | 1 cut(s) | 949 |
| BspFNI | CGCG | 1 cut(s) | 115 |
| BspLI | GGNNCC | 3 cut(s) | 526, 948, 1502 |
| BspMAI | CTGCAG | 1 cut(s) | 619 |
| BspMI | ACCTGC | 3 cut(s) | 703, 1085, 1511 |
| BspPI | GGATC | 5 cut(s) | 287, 814, 941, 954, 1600 |
| BspT104I | TTCGAA | 1 cut(s) | 1322 |
| BsrBI | CCGCTC | 2 cut(s) | 285, 1336 |
| BsrDI | GCAATG | 3 cut(s) | 1032, 1047, 1397 |
| BsrI | ACTGG | 4 cut(s) | 854, 1095, 1233, 1475 |
| BssECI | CCNNGG | 3 cut(s) | 1068, 1487, 1496 |
| BssMI | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| BssSI | CACGAG | 1 cut(s) | 40 |
| BssT1I | CCWWGG | 2 cut(s) | 1068, 1496 |
| Bst2BI | CACGAG | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 1 cut(s) | 737 |
| Bst4CI | ACNGT | 2 cut(s) | 128, 1505 |
| Bst6I | CTCTTC | 4 cut(s) | 747, 1334, 1350, 1427 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 361, 1316 |
| BstBAI | YACGTR | 1 cut(s) | 704 |
| BstBI | TTCGAA | 1 cut(s) | 1322 |
| BstC8I | GCNNGC | 1 cut(s) | 300 |
| BstDEI | CTNAG | 6 cut(s) | 408, 431, 564, 657, 986, 1275 |
| BstDSI | CCRYGG | 2 cut(s) | 1068, 1487 |
| BstF5I | GGATG | 6 cut(s) | 27, 787, 976, 1146, 1244, 1483 |
| BstFNI | CGCG | 1 cut(s) | 115 |
| BstH2I | RGCGCY | 1 cut(s) | 968 |
| BstHHI | GCGC | 1 cut(s) | 967 |
| BstKTI | GATC | 7 cut(s) | 295, 372, 423, 745, 809, 949, 1595 |
| BstMAI | GTCTC | 4 cut(s) | 78, 144, 306, 826 |
| BstMBI | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 361, 719, 728, 737, 905, 964, 1271, 1316, 1408 |
| BstNI | CCWGG | 1 cut(s) | 737 |
| BstSCI | CCNGG | 2 cut(s) | 582, 735 |
| BstSFI | CTRYAG | 2 cut(s) | 615, 941 |
| BstSLI | GKGCMC | 1 cut(s) | 873 |
| BstUI | CGCG | 1 cut(s) | 115 |
| BstV1I | GCAGC | 6 cut(s) | 367, 601, 629, 700, 1049, 1389 |
| BstV2I | GAAGAC | 2 cut(s) | 270, 1473 |
| BstX2I | RGATCY | 1 cut(s) | 946 |
| BstYI | RGATCY | 1 cut(s) | 946 |
| Bsu15I | ATCGAT | 1 cut(s) | 372 |
| BsuI | GTATCC | 1 cut(s) | 1222 |
| BsuRI | GGCC | 5 cut(s) | 176, 574, 582, 641, 929 |
| BsuTUI | ATCGAT | 1 cut(s) | 372 |
| BtgI | CCRYGG | 2 cut(s) | 1068, 1487 |
| BtsCI | GGATG | 6 cut(s) | 27, 787, 976, 1146, 1244, 1483 |
| BtsIMutI | CAGTG | 1 cut(s) | 1240 |
| BveI | ACCTGC | 3 cut(s) | 703, 1085, 1511 |
| Cac8I | GCNNGC | 1 cut(s) | 300 |
| CfoI | GCGC | 1 cut(s) | 967 |
| Cfr13I | GGNCC | 3 cut(s) | 581, 692, 1501 |
| ClaI | ATCGAT | 1 cut(s) | 372 |
| CseI | GACGC | 2 cut(s) | 104, 121 |
| Csp6I | GTAC | 3 cut(s) | 847, 1179, 1285 |
| CviAII | CATG | 4 cut(s) | 529, 1069, 1169, 1558 |
| CviQI | GTAC | 3 cut(s) | 847, 1179, 1285 |
| DdeI | CTNAG | 6 cut(s) | 408, 431, 564, 657, 986, 1275 |
| DpnI | GATC | 7 cut(s) | 294, 371, 422, 744, 808, 948, 1594 |
| DpnII | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| DraI | TTTAAA | 1 cut(s) | 934 |
| DraIII | CACNNNGTG | 1 cut(s) | 704 |
| Eam1104I | CTCTTC | 4 cut(s) | 747, 1334, 1350, 1427 |
| EarI | CTCTTC | 4 cut(s) | 747, 1334, 1350, 1427 |
| Ecl136II | GAGCTC | 1 cut(s) | 985 |
| Eco130I | CCWWGG | 2 cut(s) | 1068, 1496 |
| Eco147I | AGGCCT | 1 cut(s) | 929 |
| Eco24I | GRGCYC | 1 cut(s) | 987 |
| Eco47I | GGWCC | 2 cut(s) | 692, 1501 |
| Eco47III | AGCGCT | 1 cut(s) | 966 |
| Eco53kI | GAGCTC | 1 cut(s) | 985 |
| Eco57I | CTGAAG | 1 cut(s) | 738 |
| Eco72I | CACGTG | 1 cut(s) | 704 |
| Eco88I | CYCGRG | 1 cut(s) | 1563 |
| EcoICRI | GAGCTC | 1 cut(s) | 985 |
| EcoRII | CCWGG | 1 cut(s) | 735 |
| EcoT14I | CCWWGG | 2 cut(s) | 1068, 1496 |
| EcoT38I | GRGCYC | 1 cut(s) | 987 |
| ErhI | CCWWGG | 2 cut(s) | 1068, 1496 |
| Esp3I | CGTCTC | 1 cut(s) | 78 |
| FaeI | CATG | 4 cut(s) | 532, 1072, 1172, 1561 |
| FaqI | GGGAC | 2 cut(s) | 114, 1514 |
| FatI | CATG | 4 cut(s) | 528, 1068, 1168, 1557 |
| FauI | CCCGC | 1 cut(s) | 1023 |
| FbaI | TGATCA | 1 cut(s) | 420 |
| FblI | GTMKAC | 1 cut(s) | 1528 |
| Fnu4HI | GCNGC | 7 cut(s) | 356, 615, 618, 714, 1038, 1119, 1403 |
| FokI | GGATG | 6 cut(s) | 34, 794, 983, 1153, 1251, 1470 |
| FriOI | GRGCYC | 1 cut(s) | 987 |
| Fsp4HI | GCNGC | 7 cut(s) | 356, 615, 618, 714, 1038, 1119, 1403 |
| FspBI | CTAG | 3 cut(s) | 32, 404, 803 |
| GlaI | GCGC | 1 cut(s) | 966 |
| GluI | GCNGC | 7 cut(s) | 356, 615, 618, 714, 1038, 1119, 1403 |
| GsuI | CTGGAG | 1 cut(s) | 1608 |
| HaeII | RGCGCY | 1 cut(s) | 968 |
| HaeIII | GGCC | 5 cut(s) | 176, 574, 582, 641, 929 |
| HapII | CCGG | 4 cut(s) | 584, 599, 950, 1157 |
| HgaI | GACGC | 2 cut(s) | 104, 121 |
| HhaI | GCGC | 1 cut(s) | 967 |
| Hin1II | CATG | 4 cut(s) | 532, 1072, 1172, 1561 |
| Hin6I | GCGC | 1 cut(s) | 965 |
| HinP1I | GCGC | 1 cut(s) | 965 |
| HincII | GTYRAC | 2 cut(s) | 391, 1191 |
| HindII | GTYRAC | 2 cut(s) | 391, 1191 |
| HinfI | GANTC | 9 cut(s) | 92, 269, 436, 454, 469, 725, 1005, 1547, 1561 |
| HpaII | CCGG | 4 cut(s) | 584, 599, 950, 1157 |
| HphI | GGTGA | 3 cut(s) | 302, 769, 1088 |
| Hpy166II | GTNNAC | 4 cut(s) | 391, 871, 1191, 1529 |
| Hpy188I | TCNGA | 3 cut(s) | 411, 420, 1258 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 131, 433, 563, 838, 950, 1587 |
| Hpy8I | GTNNAC | 4 cut(s) | 391, 871, 1191, 1529 |
| Hpy99I | CGWCG | 1 cut(s) | 598 |
| HpyAV | CCTTC | 6 cut(s) | 87, 166, 316, 549, 564, 1263 |
| HpyCH4III | ACNGT | 2 cut(s) | 128, 1505 |
| HpyCH4IV | ACGT | 2 cut(s) | 703, 1534 |
| HpyCH4V | TGCA | 8 cut(s) | 364, 617, 698, 871, 1057, 1186, 1310, 1405 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 361, 719, 728, 737, 905, 964, 1271, 1316, 1408 |
| HpyF3I | CTNAG | 6 cut(s) | 408, 431, 564, 657, 986, 1275 |
| HpySE526I | ACGT | 2 cut(s) | 703, 1534 |
| Hsp92II | CATG | 4 cut(s) | 532, 1072, 1172, 1561 |
| HspAI | GCGC | 1 cut(s) | 965 |
| Kpn2I | TCCGGA | 1 cut(s) | 949 |
| Ksp22I | TGATCA | 1 cut(s) | 420 |
| Kzo9I | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| LmnI | GCTCC | 6 cut(s) | 89, 189, 476, 1084, 1255, 1333 |
| Lsp1109I | GCAGC | 6 cut(s) | 367, 601, 629, 700, 1049, 1389 |
| LweI | GCATC | 4 cut(s) | 601, 1044, 1237, 1319 |
| MaeI | CTAG | 3 cut(s) | 32, 404, 803 |
| MaeII | ACGT | 2 cut(s) | 703, 1534 |
| MaeIII | GTNAC | 3 cut(s) | 44, 757, 858 |
| MalI | GATC | 7 cut(s) | 294, 371, 422, 744, 808, 948, 1594 |
| MbiI | CCGCTC | 2 cut(s) | 285, 1336 |
| MboI | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| MboII | GAAGA | 9 cut(s) | 247, 270, 677, 764, 988, 1351, 1367, 1444, 1478 |
| MfeI | CAATTG | 1 cut(s) | 576 |
| MflI | RGATCY | 1 cut(s) | 946 |
| MhlI | GDGCHC | 2 cut(s) | 873, 987 |
| MluCI | AATT | 5 cut(s) | 326, 576, 623, 1369, 1541 |
| MluI | ACGCGT | 1 cut(s) | 113 |
| MlyI | GAGTC | 2 cut(s) | 430, 1555 |
| MmeI | TCCRAC | 3 cut(s) | 111, 530, 642 |
| MroI | TCCGGA | 1 cut(s) | 949 |
| MseI | TTAA | 3 cut(s) | 647, 933, 1113 |
| MspI | CCGG | 4 cut(s) | 584, 599, 950, 1157 |
| MspR9I | CCNGG | 2 cut(s) | 584, 737 |
| MunI | CAATTG | 1 cut(s) | 576 |
| MvaI | CCWGG | 1 cut(s) | 737 |
| MvnI | CGCG | 1 cut(s) | 115 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 361, 719, 728, 737, 905, 964, 1271, 1316, 1408 |
| NciI | CCSGG | 1 cut(s) | 584 |
| NcoI | CCATGG | 1 cut(s) | 1068 |
| NdeII | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| NlaIII | CATG | 4 cut(s) | 532, 1072, 1172, 1561 |
| NlaIV | GGNNCC | 3 cut(s) | 526, 948, 1502 |
| NmeAIII | GCCGAG | 3 cut(s) | 202, 267, 667 |
| NmuCI | GTSAC | 2 cut(s) | 757, 858 |
| NspV | TTCGAA | 1 cut(s) | 1322 |
| PaeR7I | CTCGAG | 1 cut(s) | 1563 |
| PaqCI | CACCTGC | 1 cut(s) | 1511 |
| PceI | AGGCCT | 1 cut(s) | 929 |
| PfeI | GAWTC | 7 cut(s) | 92, 269, 454, 469, 725, 1005, 1547 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1239 |
| PkrI | GCNGC | 7 cut(s) | 357, 616, 619, 715, 1039, 1120, 1404 |
| PleI | GAGTC | 2 cut(s) | 430, 1555 |
| PmaCI | CACGTG | 1 cut(s) | 704 |
| PmlI | CACGTG | 1 cut(s) | 704 |
| PpsI | GAGTC | 2 cut(s) | 430, 1555 |
| Ppu21I | YACGTR | 1 cut(s) | 704 |
| Psp124BI | GAGCTC | 1 cut(s) | 987 |
| Psp6I | CCWGG | 1 cut(s) | 735 |
| PspCI | CACGTG | 1 cut(s) | 704 |
| PspGI | CCWGG | 1 cut(s) | 735 |
| PspN4I | GGNNCC | 3 cut(s) | 526, 948, 1502 |
| PspPI | GGNCC | 3 cut(s) | 581, 692, 1501 |
| PspXI | VCTCGAGB | 1 cut(s) | 1563 |
| PstI | CTGCAG | 1 cut(s) | 619 |
| PsuI | RGATCY | 1 cut(s) | 946 |
| RsaI | GTAC | 3 cut(s) | 848, 1180, 1286 |
| RsaNI | GTAC | 3 cut(s) | 847, 1179, 1285 |
| SacI | GAGCTC | 1 cut(s) | 987 |
| SaqAI | TTAA | 3 cut(s) | 647, 933, 1113 |
| SatI | GCNGC | 7 cut(s) | 356, 615, 618, 714, 1038, 1119, 1403 |
| Sau3AI | GATC | 7 cut(s) | 292, 369, 420, 742, 806, 946, 1592 |
| Sau96I | GGNCC | 3 cut(s) | 581, 692, 1501 |
| ScaI | AGTACT | 1 cut(s) | 1286 |
| SchI | GAGTC | 2 cut(s) | 430, 1555 |
| ScrFI | CCNGG | 2 cut(s) | 584, 737 |
| SduI | GDGCHC | 2 cut(s) | 873, 987 |
| SfaNI | GCATC | 4 cut(s) | 601, 1044, 1237, 1319 |
| SfcI | CTRYAG | 2 cut(s) | 615, 941 |
| Sfr274I | CTCGAG | 1 cut(s) | 1563 |
| SfuI | TTCGAA | 1 cut(s) | 1322 |
| SinI | GGWCC | 2 cut(s) | 692, 1501 |
| SlaI | CTCGAG | 1 cut(s) | 1563 |
| SmlI | CTYRAG | 3 cut(s) | 458, 894, 1563 |
| SmoI | CTYRAG | 3 cut(s) | 458, 894, 1563 |
| Sse9I | AATT | 5 cut(s) | 326, 576, 623, 1369, 1541 |
| SseBI | AGGCCT | 1 cut(s) | 929 |
| SsiI | CCGC | 8 cut(s) | 285, 296, 302, 386, 958, 1030, 1118, 1336 |
| SspI | AATATT | 1 cut(s) | 337 |
| SspMI | CTAG | 3 cut(s) | 32, 404, 803 |
| SstI | GAGCTC | 1 cut(s) | 987 |
| StuI | AGGCCT | 1 cut(s) | 929 |
| StyD4I | CCNGG | 2 cut(s) | 582, 735 |
| StyI | CCWWGG | 2 cut(s) | 1068, 1496 |
| TaaI | ACNGT | 2 cut(s) | 128, 1505 |
| TaiI | ACGT | 2 cut(s) | 706, 1537 |
| TaqI | TCGA | 6 cut(s) | 218, 281, 372, 1322, 1391, 1564 |
| TasI | AATT | 5 cut(s) | 326, 576, 623, 1369, 1541 |
| TatI | WGTACW | 2 cut(s) | 1178, 1284 |
| TauI | GCSGC | 1 cut(s) | 1121 |
| TfiI | GAWTC | 7 cut(s) | 92, 269, 454, 469, 725, 1005, 1547 |
| Tru1I | TTAA | 3 cut(s) | 647, 933, 1113 |
| Tru9I | TTAA | 3 cut(s) | 647, 933, 1113 |
| TscAI | CASTG | 1 cut(s) | 1240 |
| TseFI | GTSAC | 2 cut(s) | 757, 858 |
| TseI | GCWGC | 6 cut(s) | 355, 614, 617, 713, 1037, 1402 |
| Tsp45I | GTSAC | 2 cut(s) | 757, 858 |
| TspDTI | ATGAA | 4 cut(s) | 38, 51, 227, 997 |
| TspGWI | ACGGA | 3 cut(s) | 47, 489, 1476 |
| TspRI | CASTG | 1 cut(s) | 1240 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1239 |
| VneI | GTGCAC | 1 cut(s) | 869 |
| VpaK11BI | GGWCC | 2 cut(s) | 692, 1501 |
| XapI | RAATTY | 1 cut(s) | 326 |
| XbaI | TCTAGA | 1 cut(s) | 31 |
| XhoI | CTCGAG | 1 cut(s) | 1563 |
| XmiI | GTMKAC | 1 cut(s) | 1528 |
| XspI | CTAG | 3 cut(s) | 32, 404, 803 |
| ZrmI | AGTACT | 1 cut(s) | 1286 |