ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 548 |
| AciI | CCGC | 2 cut(s) | 387, 519 |
| AcsI | RAATTY | 3 cut(s) | 128, 865, 947 |
| AfaI | GTAC | 4 cut(s) | 374, 531, 704, 957 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 114 |
| AflII | CTTAAG | 1 cut(s) | 962 |
| AgsI | TTSAA | 5 cut(s) | 127, 154, 258, 620, 820 |
| AjnI | CCWGG | 2 cut(s) | 28, 463 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 451, 483 |
| AluBI | AGCT | 7 cut(s) | 148, 223, 482, 641, 794, 812, 913 |
| AluI | AGCT | 7 cut(s) | 148, 223, 482, 641, 794, 812, 913 |
| Alw21I | GWGCWC | 2 cut(s) | 422, 915 |
| Alw26I | GTCTC | 1 cut(s) | 509 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 243, 794 |
| AoxI | GGCC | 3 cut(s) | 64, 105, 181 |
| ApeKI | GCWGC | 6 cut(s) | 87, 90, 638, 667, 788, 791 |
| ApoI | RAATTY | 3 cut(s) | 128, 865, 947 |
| AspS9I | GGNCC | 4 cut(s) | 65, 106, 182, 1005 |
| AsuC2I | CCSGG | 2 cut(s) | 366, 1009 |
| AsuHPI | GGTGA | 1 cut(s) | 42 |
| AvaII | GGWCC | 1 cut(s) | 1005 |
| BanII | GRGCYC | 1 cut(s) | 915 |
| Bbv12I | GWGCWC | 2 cut(s) | 422, 915 |
| BbvCI | CCTCAGC | 1 cut(s) | 161 |
| BbvI | GCAGC | 6 cut(s) | 99, 102, 650, 679, 800, 803 |
| BccI | CCATC | 3 cut(s) | 311, 551, 778 |
| BciT130I | CCWGG | 2 cut(s) | 30, 465 |
| BciVI | GTATCC | 1 cut(s) | 859 |
| BclI | TGATCA | 1 cut(s) | 940 |
| BcnI | CCSGG | 2 cut(s) | 366, 1009 |
| BcoDI | GTCTC | 1 cut(s) | 509 |
| BfaI | CTAG | 1 cut(s) | 1027 |
| BfmI | CTRYAG | 2 cut(s) | 471, 665 |
| BfrI | CTTAAG | 1 cut(s) | 962 |
| BfuI | GTATCC | 1 cut(s) | 859 |
| BisI | GCNGC | 6 cut(s) | 88, 91, 639, 668, 789, 792 |
| BlsI | GCNGC | 6 cut(s) | 89, 92, 640, 669, 790, 793 |
| Bme1390I | CCNGG | 4 cut(s) | 30, 366, 465, 1009 |
| Bme18I | GGWCC | 1 cut(s) | 1005 |
| BmgT120I | GGNCC | 4 cut(s) | 65, 106, 182, 1005 |
| BmiI | GGNNCC | 1 cut(s) | 1007 |
| BmrFI | CCNGG | 4 cut(s) | 30, 366, 465, 1009 |
| BpmI | CTGGAG | 1 cut(s) | 519 |
| Bpu10I | CCTNAGC | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 3 cut(s) | 464, 882, 929 |
| BpuMI | CCSGG | 2 cut(s) | 366, 1009 |
| BsaI | GGTCTC | 1 cut(s) | 509 |
| BsaWI | WCCGGW | 2 cut(s) | 114, 261 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 114 |
| Bse1I | ACTGG | 1 cut(s) | 731 |
| Bse3DI | GCAATG | 3 cut(s) | 532, 849, 915 |
| BseBI | CCWGG | 2 cut(s) | 30, 465 |
| BseGI | GGATG | 2 cut(s) | 198, 562 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 114 |
| BseMI | GCAATG | 3 cut(s) | 532, 849, 915 |
| BseMII | CTCAG | 2 cut(s) | 175, 786 |
| BseNI | ACTGG | 1 cut(s) | 731 |
| BseRI | GAGGAG | 1 cut(s) | 492 |
| BseXI | GCAGC | 6 cut(s) | 99, 102, 650, 679, 800, 803 |
| BseYI | CCCAGC | 2 cut(s) | 219, 812 |
| BshFI | GGCC | 3 cut(s) | 66, 107, 183 |
| BsiHKAI | GWGCWC | 2 cut(s) | 422, 915 |
| BsiSI | CCGG | 4 cut(s) | 115, 262, 366, 1009 |
| BslFI | GGGAC | 1 cut(s) | 709 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 114 |
| BsmAI | GTCTC | 1 cut(s) | 509 |
| BsmFI | GGGAC | 1 cut(s) | 709 |
| BsmI | GAATGC | 2 cut(s) | 253, 499 |
| BsnI | GGCC | 3 cut(s) | 66, 107, 183 |
| Bso31I | GGTCTC | 1 cut(s) | 509 |
| Bsp1286I | GDGCHC | 2 cut(s) | 422, 915 |
| Bsp1407I | TGTACA | 2 cut(s) | 372, 529 |
| Bsp143I | GATC | 2 cut(s) | 211, 940 |
| BspACI | CCGC | 2 cut(s) | 387, 519 |
| BspANI | GGCC | 3 cut(s) | 66, 107, 183 |
| BspCNI | CTCAG | 2 cut(s) | 174, 787 |
| BspLI | GGNNCC | 1 cut(s) | 1007 |
| BspMAI | CTGCAG | 1 cut(s) | 669 |
| BspTI | CTTAAG | 1 cut(s) | 962 |
| BspTNI | GGTCTC | 1 cut(s) | 509 |
| BsrDI | GCAATG | 3 cut(s) | 532, 849, 915 |
| BsrGI | TGTACA | 2 cut(s) | 372, 529 |
| BsrI | ACTGG | 1 cut(s) | 731 |
| BssMI | GATC | 2 cut(s) | 211, 940 |
| Bst2UI | CCWGG | 2 cut(s) | 30, 465 |
| Bst4CI | ACNGT | 3 cut(s) | 36, 245, 379 |
| Bst6I | CTCTTC | 1 cut(s) | 712 |
| BstAFI | CTTAAG | 1 cut(s) | 962 |
| BstAUI | TGTACA | 2 cut(s) | 372, 529 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 751 |
| BstDEI | CTNAG | 3 cut(s) | 161, 575, 795 |
| BstF5I | GGATG | 2 cut(s) | 198, 562 |
| BstKTI | GATC | 2 cut(s) | 214, 943 |
| BstMAI | GTCTC | 1 cut(s) | 509 |
| BstMBI | GATC | 2 cut(s) | 211, 940 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 647 |
| BstNI | CCWGG | 2 cut(s) | 30, 465 |
| BstNSI | RCATGY | 1 cut(s) | 907 |
| BstSCI | CCNGG | 4 cut(s) | 28, 364, 463, 1007 |
| BstSFI | CTRYAG | 2 cut(s) | 471, 665 |
| BstV1I | GCAGC | 6 cut(s) | 99, 102, 650, 679, 800, 803 |
| BsuI | GTATCC | 1 cut(s) | 859 |
| BsuRI | GGCC | 3 cut(s) | 66, 107, 183 |
| BtsCI | GGATG | 2 cut(s) | 198, 562 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 751 |
| CaiI | CAGNNNCTG | 2 cut(s) | 243, 794 |
| Cfr13I | GGNCC | 4 cut(s) | 65, 106, 182, 1005 |
| Csp6I | GTAC | 4 cut(s) | 373, 530, 703, 956 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 865, 900 |
| CviAII | CATG | 3 cut(s) | 706, 860, 904 |
| CviQI | GTAC | 4 cut(s) | 373, 530, 703, 956 |
| DdeI | CTNAG | 3 cut(s) | 161, 575, 795 |
| DpnI | GATC | 2 cut(s) | 213, 942 |
| DpnII | GATC | 2 cut(s) | 211, 940 |
| DraI | TTTAAA | 1 cut(s) | 661 |
| Eam1104I | CTCTTC | 1 cut(s) | 712 |
| EarI | CTCTTC | 1 cut(s) | 712 |
| Ecl136II | GAGCTC | 1 cut(s) | 913 |
| Eco24I | GRGCYC | 1 cut(s) | 915 |
| Eco31I | GGTCTC | 1 cut(s) | 509 |
| Eco47I | GGWCC | 1 cut(s) | 1005 |
| Eco53kI | GAGCTC | 1 cut(s) | 913 |
| EcoICRI | GAGCTC | 1 cut(s) | 913 |
| EcoO109I | RGGNCCY | 1 cut(s) | 65 |
| EcoRII | CCWGG | 2 cut(s) | 28, 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 915 |
| FaeI | CATG | 3 cut(s) | 709, 863, 907 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 891, 923 |
| FaqI | GGGAC | 1 cut(s) | 709 |
| FatI | CATG | 3 cut(s) | 705, 859, 903 |
| FbaI | TGATCA | 1 cut(s) | 940 |
| Fnu4HI | GCNGC | 6 cut(s) | 88, 91, 639, 668, 789, 792 |
| FokI | GGATG | 2 cut(s) | 185, 569 |
| FriOI | GRGCYC | 1 cut(s) | 915 |
| Fsp4HI | GCNGC | 6 cut(s) | 88, 91, 639, 668, 789, 792 |
| FspBI | CTAG | 1 cut(s) | 1027 |
| GluI | GCNGC | 6 cut(s) | 88, 91, 639, 668, 789, 792 |
| GsaI | CCCAGC | 2 cut(s) | 223, 816 |
| GsuI | CTGGAG | 1 cut(s) | 519 |
| HaeIII | GGCC | 3 cut(s) | 66, 107, 183 |
| HapII | CCGG | 4 cut(s) | 115, 262, 366, 1009 |
| Hin1II | CATG | 3 cut(s) | 709, 863, 907 |
| HinfI | GANTC | 4 cut(s) | 460, 524, 766, 783 |
| HpaII | CCGG | 4 cut(s) | 115, 262, 366, 1009 |
| HphI | GGTGA | 1 cut(s) | 42 |
| Hpy166II | GTNNAC | 3 cut(s) | 373, 375, 1005 |
| Hpy188I | TCNGA | 6 cut(s) | 216, 239, 676, 765, 775, 945 |
| Hpy188III | TCNNGA | 2 cut(s) | 620, 899 |
| Hpy8I | GTNNAC | 3 cut(s) | 373, 375, 1005 |
| HpyAV | CCTTC | 2 cut(s) | 422, 922 |
| HpyCH4III | ACNGT | 3 cut(s) | 36, 245, 379 |
| HpyCH4IV | ACGT | 1 cut(s) | 977 |
| HpyCH4V | TGCA | 5 cut(s) | 452, 628, 667, 863, 953 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 647 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 575, 795 |
| HpySE526I | ACGT | 1 cut(s) | 977 |
| Hsp92II | CATG | 3 cut(s) | 709, 863, 907 |
| Ksp22I | TGATCA | 1 cut(s) | 940 |
| Kzo9I | GATC | 2 cut(s) | 211, 940 |
| LmnI | GCTCC | 3 cut(s) | 425, 479, 500 |
| Lsp1109I | GCAGC | 6 cut(s) | 99, 102, 650, 679, 800, 803 |
| MaeI | CTAG | 1 cut(s) | 1027 |
| MaeII | ACGT | 1 cut(s) | 977 |
| MaeIII | GTNAC | 3 cut(s) | 17, 652, 973 |
| MalI | GATC | 2 cut(s) | 213, 942 |
| MboI | GATC | 2 cut(s) | 211, 940 |
| MboII | GAAGA | 3 cut(s) | 367, 729, 980 |
| MfeI | CAATTG | 1 cut(s) | 877 |
| MhlI | GDGCHC | 2 cut(s) | 422, 915 |
| MluCI | AATT | 9 cut(s) | 128, 289, 339, 592, 632, 677, 865, 877, 947 |
| MlyI | GAGTC | 1 cut(s) | 792 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| MnlI | CCTC | 8 cut(s) | 56, 131, 170, 449, 470, 730, 830, 904 |
| MseI | TTAA | 4 cut(s) | 399, 414, 660, 963 |
| MspA1I | CMGCKG | 2 cut(s) | 521, 794 |
| MspCI | CTTAAG | 1 cut(s) | 962 |
| MspI | CCGG | 4 cut(s) | 115, 262, 366, 1009 |
| MspR9I | CCNGG | 4 cut(s) | 30, 366, 465, 1009 |
| MunI | CAATTG | 1 cut(s) | 877 |
| Mva1269I | GAATGC | 2 cut(s) | 253, 499 |
| MvaI | CCWGG | 2 cut(s) | 30, 465 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 171, 180, 647 |
| NciI | CCSGG | 2 cut(s) | 366, 1009 |
| NdeII | GATC | 2 cut(s) | 211, 940 |
| NlaIII | CATG | 3 cut(s) | 709, 863, 907 |
| NlaIV | GGNNCC | 1 cut(s) | 1007 |
| NspI | RCATGY | 1 cut(s) | 907 |
| PctI | GAATGC | 2 cut(s) | 253, 499 |
| PfeI | GAWTC | 3 cut(s) | 460, 524, 766 |
| PfoI | TCCNGGA | 1 cut(s) | 28 |
| PkrI | GCNGC | 6 cut(s) | 89, 92, 640, 669, 790, 793 |
| PleI | GAGTC | 1 cut(s) | 791 |
| PpsI | GAGTC | 1 cut(s) | 791 |
| PsiI | TTATAA | 1 cut(s) | 548 |
| Psp124BI | GAGCTC | 1 cut(s) | 915 |
| Psp6I | CCWGG | 2 cut(s) | 28, 463 |
| PspFI | CCCAGC | 2 cut(s) | 219, 812 |
| PspGI | CCWGG | 2 cut(s) | 28, 463 |
| PspN4I | GGNNCC | 1 cut(s) | 1007 |
| PspPI | GGNCC | 4 cut(s) | 65, 106, 182, 1005 |
| PstI | CTGCAG | 1 cut(s) | 669 |
| PstNI | CAGNNNCTG | 2 cut(s) | 243, 794 |
| PvuII | CAGCTG | 1 cut(s) | 794 |
| RsaI | GTAC | 4 cut(s) | 374, 531, 704, 957 |
| RsaNI | GTAC | 4 cut(s) | 373, 530, 703, 956 |
| SacI | GAGCTC | 1 cut(s) | 915 |
| SaqAI | TTAA | 4 cut(s) | 399, 414, 660, 963 |
| SatI | GCNGC | 6 cut(s) | 88, 91, 639, 668, 789, 792 |
| Sau3AI | GATC | 2 cut(s) | 211, 940 |
| Sau96I | GGNCC | 4 cut(s) | 65, 106, 182, 1005 |
| SchI | GAGTC | 1 cut(s) | 792 |
| ScrFI | CCNGG | 4 cut(s) | 30, 366, 465, 1009 |
| SduI | GDGCHC | 2 cut(s) | 422, 915 |
| SfcI | CTRYAG | 2 cut(s) | 471, 665 |
| SinI | GGWCC | 1 cut(s) | 1005 |
| SmlI | CTYRAG | 4 cut(s) | 443, 897, 908, 962 |
| SmoI | CTYRAG | 4 cut(s) | 443, 897, 908, 962 |
| Sse9I | AATT | 9 cut(s) | 128, 289, 339, 592, 632, 677, 865, 877, 947 |
| SsiI | CCGC | 2 cut(s) | 387, 519 |
| SspMI | CTAG | 1 cut(s) | 1027 |
| SstI | GAGCTC | 1 cut(s) | 915 |
| StyD4I | CCNGG | 4 cut(s) | 28, 364, 463, 1007 |
| TaaI | ACNGT | 3 cut(s) | 36, 245, 379 |
| TaiI | ACGT | 1 cut(s) | 980 |
| TaqI | TCGA | 2 cut(s) | 136, 210 |
| TaqII | GACCGA | 2 cut(s) | 594, 745 |
| TasI | AATT | 9 cut(s) | 128, 289, 339, 592, 632, 677, 865, 877, 947 |
| TatI | WGTACW | 4 cut(s) | 372, 529, 702, 955 |
| TfiI | GAWTC | 3 cut(s) | 460, 524, 766 |
| Tru1I | TTAA | 4 cut(s) | 399, 414, 660, 963 |
| Tru9I | TTAA | 4 cut(s) | 399, 414, 660, 963 |
| TseI | GCWGC | 6 cut(s) | 87, 90, 638, 667, 788, 791 |
| TspDTI | ATGAA | 5 cut(s) | 187, 256, 441, 506, 862 |
| Vha464I | CTTAAG | 1 cut(s) | 962 |
| VpaK11BI | GGWCC | 1 cut(s) | 1005 |
| XapI | RAATTY | 3 cut(s) | 128, 865, 947 |
| XceI | RCATGY | 1 cut(s) | 907 |
| XspI | CTAG | 1 cut(s) | 1027 |