Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 242, 475 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 628 |
| AciI | CCGC | 3 cut(s) | 76, 163, 614 |
| AclWI | GGATC | 4 cut(s) | 106, 129, 221, 549 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AcuI | CTGAAG | 1 cut(s) | 218 |
| AcvI | CACGTG | 1 cut(s) | 565 |
| AdeI | CACNNNGTG | 1 cut(s) | 588 |
| AfaI | GTAC | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 95, 102, 306, 628, 740 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AgeI | ACCGGT | 1 cut(s) | 785 |
| AjnI | CCWGG | 3 cut(s) | 245, 331, 497 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 584, 616 |
| AluBI | AGCT | 4 cut(s) | 196, 286, 360, 454 |
| AluI | AGCT | 4 cut(s) | 196, 286, 360, 454 |
| Alw21I | GWGCWC | 1 cut(s) | 288 |
| Alw26I | GTCTC | 1 cut(s) | 186 |
| AlwI | GGATC | 4 cut(s) | 106, 129, 221, 549 |
| Ama87I | CYCGRG | 3 cut(s) | 183, 643, 660 |
| AoxI | GGCC | 2 cut(s) | 93, 695 |
| ApaI | GGGCCC | 1 cut(s) | 699 |
| ApeKI | GCWGC | 4 cut(s) | 70, 73, 254, 357 |
| AsiGI | ACCGGT | 1 cut(s) | 785 |
| AspLEI | GCGC | 2 cut(s) | 70, 133 |
| AspS9I | GGNCC | 3 cut(s) | 695, 696, 731 |
| AsuHPI | GGTGA | 1 cut(s) | 293 |
| AvaI | CYCGRG | 3 cut(s) | 183, 643, 660 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 1 cut(s) | 699 |
| BanI | GGYRCC | 2 cut(s) | 242, 475 |
| BanII | GRGCYC | 2 cut(s) | 288, 699 |
| BbrPI | CACGTG | 1 cut(s) | 565 |
| Bbv12I | GWGCWC | 1 cut(s) | 288 |
| BbvI | GCAGC | 4 cut(s) | 82, 85, 241, 369 |
| BccI | CCATC | 1 cut(s) | 37 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 3 cut(s) | 247, 333, 499 |
| BcoDI | GTCTC | 1 cut(s) | 186 |
| BfaI | CTAG | 3 cut(s) | 159, 224, 455 |
| BfoI | RGCGCY | 1 cut(s) | 134 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 326, 703 |
| BisI | GCNGC | 5 cut(s) | 71, 74, 164, 255, 358 |
| BlsI | GCNGC | 5 cut(s) | 72, 75, 165, 256, 359 |
| Bme1390I | CCNGG | 3 cut(s) | 247, 333, 499 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 3 cut(s) | 183, 643, 660 |
| BmgT120I | GGNCC | 3 cut(s) | 695, 696, 731 |
| BmiI | GGNNCC | 5 cut(s) | 244, 330, 477, 697, 733 |
| BmrFI | CCNGG | 3 cut(s) | 247, 333, 499 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 270, 302 |
| BsaAI | YACGTR | 1 cut(s) | 565 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 5 cut(s) | 117, 230, 332, 479, 498 |
| BsaWI | WCCGGW | 1 cut(s) | 785 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 761, 791 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 95, 102, 306, 628, 740 |
| Bse118I | RCCGGY | 2 cut(s) | 320, 785 |
| Bse1I | ACTGG | 2 cut(s) | 89, 745 |
| Bse3DI | GCAATG | 1 cut(s) | 55 |
| BseBI | CCWGG | 3 cut(s) | 247, 333, 499 |
| BseDI | CCNNGG | 5 cut(s) | 117, 230, 332, 479, 498 |
| BseGI | GGATG | 3 cut(s) | 45, 349, 489 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 95, 102, 306, 628, 740 |
| BseMI | GCAATG | 1 cut(s) | 55 |
| BseMII | CTCAG | 1 cut(s) | 32 |
| BseNI | ACTGG | 2 cut(s) | 89, 745 |
| BseRI | GAGGAG | 1 cut(s) | 773 |
| BseSI | GKGCMC | 1 cut(s) | 699 |
| BseXI | GCAGC | 4 cut(s) | 82, 85, 241, 369 |
| BseYI | CCCAGC | 2 cut(s) | 31, 133 |
| Bsh1285I | CGRYCG | 1 cut(s) | 59 |
| BshFI | GGCC | 2 cut(s) | 95, 697 |
| BshNI | GGYRCC | 2 cut(s) | 242, 475 |
| BshTI | ACCGGT | 1 cut(s) | 785 |
| BsiEI | CGRYCG | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 288 |
| BsiHKCI | CYCGRG | 3 cut(s) | 183, 643, 660 |
| BsiSI | CCGG | 3 cut(s) | 96, 321, 786 |
| BsiWI | CGTACG | 1 cut(s) | 125 |
| BslFI | GGGAC | 3 cut(s) | 423, 516, 593 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 95, 102, 306, 628, 740 |
| BsmAI | GTCTC | 1 cut(s) | 186 |
| BsmFI | GGGAC | 3 cut(s) | 423, 516, 593 |
| BsmI | GAATGC | 1 cut(s) | 112 |
| BsnI | GGCC | 2 cut(s) | 95, 697 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| BsoBI | CYCGRG | 3 cut(s) | 183, 643, 660 |
| Bsp120I | GGGCCC | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 2 cut(s) | 288, 699 |
| Bsp143I | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| Bsp19I | CCATGG | 2 cut(s) | 117, 479 |
| BspACI | CCGC | 3 cut(s) | 76, 163, 614 |
| BspANI | GGCC | 2 cut(s) | 95, 697 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspHI | TCATGA | 1 cut(s) | 721 |
| BspLI | GGNNCC | 5 cut(s) | 244, 330, 477, 697, 733 |
| BspPI | GGATC | 4 cut(s) | 106, 129, 221, 549 |
| BspT107I | GGYRCC | 2 cut(s) | 242, 475 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrDI | GCAATG | 1 cut(s) | 55 |
| BsrFI | RCCGGY | 2 cut(s) | 320, 785 |
| BsrI | ACTGG | 2 cut(s) | 89, 745 |
| BssAI | RCCGGY | 2 cut(s) | 320, 785 |
| BssECI | CCNNGG | 5 cut(s) | 117, 230, 332, 479, 498 |
| BssMI | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| BssT1I | CCWWGG | 2 cut(s) | 117, 479 |
| Bst2UI | CCWGG | 3 cut(s) | 247, 333, 499 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 586 |
| Bst6I | CTCTTC | 2 cut(s) | 12, 587 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstBAI | YACGTR | 1 cut(s) | 565 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 252, 322 |
| BstDEI | CTNAG | 1 cut(s) | 18 |
| BstDSI | CCRYGG | 2 cut(s) | 117, 479 |
| BstEII | GGTNACC | 1 cut(s) | 295 |
| BstF5I | GGATG | 3 cut(s) | 45, 349, 489 |
| BstH2I | RGCGCY | 1 cut(s) | 134 |
| BstHHI | GCGC | 2 cut(s) | 70, 133 |
| BstKTI | GATC | 5 cut(s) | 59, 101, 124, 229, 557 |
| BstMAI | GTCTC | 1 cut(s) | 186 |
| BstMBI | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| BstMCI | CGRYCG | 1 cut(s) | 59 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 82, 169, 283, 326, 559, 703 |
| BstNI | CCWGG | 3 cut(s) | 247, 333, 499 |
| BstNSI | RCATGY | 1 cut(s) | 438 |
| BstPI | GGTNACC | 1 cut(s) | 295 |
| BstSCI | CCNGG | 3 cut(s) | 245, 331, 497 |
| BstSLI | GKGCMC | 1 cut(s) | 699 |
| BstV1I | GCAGC | 4 cut(s) | 82, 85, 241, 369 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 486 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BsuRI | GGCC | 2 cut(s) | 95, 697 |
| BtgI | CCRYGG | 2 cut(s) | 117, 479 |
| BtgZI | GCGATG | 1 cut(s) | 163 |
| BtsCI | GGATG | 3 cut(s) | 45, 349, 489 |
| BtsI | GCAGTG | 1 cut(s) | 179 |
| BtsIMutI | CAGTG | 3 cut(s) | 96, 179, 545 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 252, 322 |
| CciI | TCATGA | 1 cut(s) | 721 |
| CfoI | GCGC | 2 cut(s) | 70, 133 |
| Cfr10I | RCCGGY | 2 cut(s) | 320, 785 |
| Cfr13I | GGNCC | 3 cut(s) | 695, 696, 731 |
| CseI | GACGC | 1 cut(s) | 212 |
| Csp6I | GTAC | 1 cut(s) | 126 |
| CspAI | ACCGGT | 1 cut(s) | 785 |
| CviAII | CATG | 8 cut(s) | 102, 118, 435, 480, 623, 709, 722, 775 |
| CviQI | GTAC | 1 cut(s) | 126 |
| DdeI | CTNAG | 1 cut(s) | 18 |
| DpnI | GATC | 5 cut(s) | 58, 100, 123, 228, 556 |
| DpnII | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| DraIII | CACNNNGTG | 1 cut(s) | 588 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 2 cut(s) | 12, 587 |
| EarI | CTCTTC | 2 cut(s) | 12, 587 |
| Ecl136II | GAGCTC | 1 cut(s) | 286 |
| Eco130I | CCWWGG | 2 cut(s) | 117, 479 |
| Eco24I | GRGCYC | 2 cut(s) | 288, 699 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 1 cut(s) | 218 |
| Eco72I | CACGTG | 1 cut(s) | 565 |
| Eco88I | CYCGRG | 3 cut(s) | 183, 643, 660 |
| Eco91I | GGTNACC | 1 cut(s) | 295 |
| EcoICRI | GAGCTC | 1 cut(s) | 286 |
| EcoO109I | RGGNCCY | 1 cut(s) | 696 |
| EcoO65I | GGTNACC | 1 cut(s) | 295 |
| EcoRII | CCWGG | 3 cut(s) | 245, 331, 497 |
| EcoT14I | CCWWGG | 2 cut(s) | 117, 479 |
| EcoT38I | GRGCYC | 2 cut(s) | 288, 699 |
| ErhI | CCWWGG | 2 cut(s) | 117, 479 |
| FaeI | CATG | 8 cut(s) | 105, 121, 438, 483, 626, 712, 725, 778 |
| FaqI | GGGAC | 3 cut(s) | 423, 516, 593 |
| FatI | CATG | 8 cut(s) | 101, 117, 434, 479, 622, 708, 721, 774 |
| Fnu4HI | GCNGC | 5 cut(s) | 71, 74, 164, 255, 358 |
| FokI | GGATG | 3 cut(s) | 52, 356, 496 |
| FriOI | GRGCYC | 2 cut(s) | 288, 699 |
| Fsp4HI | GCNGC | 5 cut(s) | 71, 74, 164, 255, 358 |
| FspBI | CTAG | 3 cut(s) | 159, 224, 455 |
| GlaI | GCGC | 2 cut(s) | 69, 132 |
| GluI | GCNGC | 5 cut(s) | 71, 74, 164, 255, 358 |
| GsaI | CCCAGC | 2 cut(s) | 35, 137 |
| HaeII | RGCGCY | 1 cut(s) | 134 |
| HaeIII | GGCC | 2 cut(s) | 95, 697 |
| HapII | CCGG | 3 cut(s) | 96, 321, 786 |
| HgaI | GACGC | 1 cut(s) | 212 |
| HhaI | GCGC | 2 cut(s) | 70, 133 |
| Hin1II | CATG | 8 cut(s) | 105, 121, 438, 483, 626, 712, 725, 778 |
| Hin6I | GCGC | 2 cut(s) | 68, 131 |
| HinP1I | GCGC | 2 cut(s) | 68, 131 |
| HinfI | GANTC | 3 cut(s) | 4, 209, 648 |
| HpaII | CCGG | 3 cut(s) | 96, 321, 786 |
| HphI | GGTGA | 1 cut(s) | 293 |
| Hpy166II | GTNNAC | 1 cut(s) | 780 |
| Hpy188I | TCNGA | 1 cut(s) | 231 |
| Hpy188III | TCNNGA | 5 cut(s) | 183, 224, 636, 645, 722 |
| Hpy8I | GTNNAC | 1 cut(s) | 780 |
| Hpy99I | CGWCG | 1 cut(s) | 64 |
| HpyAV | CCTTC | 2 cut(s) | 193, 284 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 586 |
| HpyCH4IV | ACGT | 1 cut(s) | 564 |
| HpyCH4V | TGCA | 2 cut(s) | 172, 562 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 82, 169, 283, 326, 559, 703 |
| HpyF3I | CTNAG | 1 cut(s) | 18 |
| HpySE526I | ACGT | 1 cut(s) | 564 |
| Hsp92II | CATG | 8 cut(s) | 105, 121, 438, 483, 626, 712, 725, 778 |
| HspAI | GCGC | 2 cut(s) | 68, 131 |
| KroI | GCCGGC | 1 cut(s) | 320 |
| KroNI | GCCGGC | 1 cut(s) | 322 |
| Kzo9I | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| LmnI | GCTCC | 2 cut(s) | 78, 334 |
| Lsp1109I | GCAGC | 4 cut(s) | 82, 85, 241, 369 |
| LweI | GCATC | 1 cut(s) | 145 |
| MaeI | CTAG | 3 cut(s) | 159, 224, 455 |
| MaeII | ACGT | 1 cut(s) | 564 |
| MaeIII | GTNAC | 2 cut(s) | 295, 736 |
| MalI | GATC | 5 cut(s) | 58, 100, 123, 228, 556 |
| MboI | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| MboII | GAAGA | 2 cut(s) | 6, 604 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MhlI | GDGCHC | 2 cut(s) | 288, 699 |
| MluCI | AATT | 3 cut(s) | 467, 507, 516 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MroNI | GCCGGC | 1 cut(s) | 320 |
| MseI | TTAA | 3 cut(s) | 192, 384, 515 |
| MslI | CAYNNNNRTG | 2 cut(s) | 433, 484 |
| MspA1I | CMGCKG | 1 cut(s) | 76 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| MspI | CCGG | 3 cut(s) | 96, 321, 786 |
| MspR9I | CCNGG | 3 cut(s) | 247, 333, 499 |
| Mva1269I | GAATGC | 1 cut(s) | 112 |
| MvaI | CCWGG | 3 cut(s) | 247, 333, 499 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 82, 169, 283, 326, 559, 703 |
| NaeI | GCCGGC | 1 cut(s) | 322 |
| NcoI | CCATGG | 2 cut(s) | 117, 479 |
| NdeII | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| NgoMIV | GCCGGC | 1 cut(s) | 320 |
| NlaIII | CATG | 8 cut(s) | 105, 121, 438, 483, 626, 712, 725, 778 |
| NlaIV | GGNNCC | 5 cut(s) | 244, 330, 477, 697, 733 |
| NspI | RCATGY | 1 cut(s) | 438 |
| PaeR7I | CTCGAG | 1 cut(s) | 183 |
| PagI | TCATGA | 1 cut(s) | 721 |
| PctI | GAATGC | 1 cut(s) | 112 |
| PdiI | GCCGGC | 1 cut(s) | 322 |
| PfeI | GAWTC | 1 cut(s) | 648 |
| Pfl23II | CGTACG | 1 cut(s) | 125 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 628 |
| PinAI | ACCGGT | 1 cut(s) | 785 |
| PkrI | GCNGC | 5 cut(s) | 72, 75, 165, 256, 359 |
| Ple19I | CGATCG | 1 cut(s) | 59 |
| PleI | GAGTC | 1 cut(s) | 203 |
| PmaCI | CACGTG | 1 cut(s) | 565 |
| PmlI | CACGTG | 1 cut(s) | 565 |
| PpsI | GAGTC | 1 cut(s) | 203 |
| Ppu21I | YACGTR | 1 cut(s) | 565 |
| Psp124BI | GAGCTC | 1 cut(s) | 288 |
| Psp6I | CCWGG | 3 cut(s) | 245, 331, 497 |
| PspCI | CACGTG | 1 cut(s) | 565 |
| PspEI | GGTNACC | 1 cut(s) | 295 |
| PspFI | CCCAGC | 2 cut(s) | 31, 133 |
| PspGI | CCWGG | 3 cut(s) | 245, 331, 497 |
| PspLI | CGTACG | 1 cut(s) | 125 |
| PspN4I | GGNNCC | 5 cut(s) | 244, 330, 477, 697, 733 |
| PspOMI | GGGCCC | 1 cut(s) | 695 |
| PspPI | GGNCC | 3 cut(s) | 695, 696, 731 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| PvuI | CGATCG | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 127 |
| RsaNI | GTAC | 1 cut(s) | 126 |
| RseI | CAYNNNNRTG | 2 cut(s) | 433, 484 |
| SacI | GAGCTC | 1 cut(s) | 288 |
| SaqAI | TTAA | 3 cut(s) | 192, 384, 515 |
| SatI | GCNGC | 5 cut(s) | 71, 74, 164, 255, 358 |
| Sau3AI | GATC | 5 cut(s) | 56, 98, 121, 226, 554 |
| Sau96I | GGNCC | 3 cut(s) | 695, 696, 731 |
| SchI | GAGTC | 1 cut(s) | 203 |
| ScrFI | CCNGG | 3 cut(s) | 247, 333, 499 |
| SduI | GDGCHC | 2 cut(s) | 288, 699 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| Sfr274I | CTCGAG | 1 cut(s) | 183 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 183 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 433, 484 |
| SmlI | CTYRAG | 2 cut(s) | 183, 191 |
| SmoI | CTYRAG | 2 cut(s) | 183, 191 |
| Sse9I | AATT | 3 cut(s) | 467, 507, 516 |
| SsiI | CCGC | 3 cut(s) | 76, 163, 614 |
| SspMI | CTAG | 3 cut(s) | 159, 224, 455 |
| SstI | GAGCTC | 1 cut(s) | 288 |
| StyD4I | CCNGG | 3 cut(s) | 245, 331, 497 |
| StyI | CCWWGG | 2 cut(s) | 117, 479 |
| TaaI | ACNGT | 2 cut(s) | 64, 586 |
| TaiI | ACGT | 1 cut(s) | 567 |
| TaqI | TCGA | 3 cut(s) | 59, 184, 288 |
| TasI | AATT | 3 cut(s) | 467, 507, 516 |
| TauI | GCSGC | 1 cut(s) | 166 |
| TfiI | GAWTC | 1 cut(s) | 648 |
| Tru1I | TTAA | 3 cut(s) | 192, 384, 515 |
| Tru9I | TTAA | 3 cut(s) | 192, 384, 515 |
| TscAI | CASTG | 3 cut(s) | 96, 179, 545 |
| TseI | GCWGC | 4 cut(s) | 70, 73, 254, 357 |
| TspDTI | ATGAA | 3 cut(s) | 640, 710, 763 |
| TspGWI | ACGGA | 2 cut(s) | 436, 744 |
| TspRI | CASTG | 3 cut(s) | 96, 179, 545 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 628 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XbaI | TCTAGA | 1 cut(s) | 223 |
| XceI | RCATGY | 1 cut(s) | 438 |
| XhoI | CTCGAG | 1 cut(s) | 183 |
| XspI | CTAG | 3 cut(s) | 159, 224, 455 |