ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 201 |
| Acc36I | ACCTGC | 2 cut(s) | 26, 303 |
| AccII | CGCG | 1 cut(s) | 41 |
| AciI | CCGC | 3 cut(s) | 22, 39, 41 |
| AclWI | GGATC | 4 cut(s) | 29, 243, 470, 483 |
| AcsI | RAATTY | 1 cut(s) | 499 |
| AfaI | GTAC | 1 cut(s) | 454 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 44, 469 |
| AflII | CTTAAG | 1 cut(s) | 419 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| AluBI | AGCT | 1 cut(s) | 158 |
| AluI | AGCT | 1 cut(s) | 158 |
| Alw26I | GTCTC | 2 cut(s) | 187, 417 |
| AlwI | GGATC | 4 cut(s) | 29, 243, 470, 483 |
| ApoI | RAATTY | 1 cut(s) | 499 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 1 cut(s) | 366 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 444, 477 |
| BamHI | GGATCC | 1 cut(s) | 475 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| BceAI | ACGGC | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 2 cut(s) | 187, 417 |
| BfaI | CTAG | 1 cut(s) | 489 |
| BfrI | CTTAAG | 1 cut(s) | 419 |
| BfuAI | ACCTGC | 2 cut(s) | 26, 303 |
| BisI | GCNGC | 1 cut(s) | 22 |
| BlsI | GCNGC | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 1 cut(s) | 233 |
| BmiI | GGNNCC | 1 cut(s) | 477 |
| BmrFI | CCNGG | 1 cut(s) | 233 |
| BmsI | GCATC | 2 cut(s) | 90, 346 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 1 cut(s) | 324 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| BsaI | GGTCTC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 479 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 44, 469 |
| Bse1I | ACTGG | 2 cut(s) | 182, 494 |
| Bse3DI | GCAATG | 1 cut(s) | 55 |
| BseDI | CCNNGG | 2 cut(s) | 39, 479 |
| BseGI | GGATG | 3 cut(s) | 186, 299, 361 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 44, 469 |
| BseMI | GCAATG | 1 cut(s) | 55 |
| BseNI | ACTGG | 2 cut(s) | 182, 494 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| Bsh1236I | CGCG | 1 cut(s) | 41 |
| BsiSI | CCGG | 1 cut(s) | 232 |
| BslFI | GGGAC | 1 cut(s) | 189 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 44, 469 |
| BsmAI | GTCTC | 2 cut(s) | 187, 417 |
| BsmFI | GGGAC | 1 cut(s) | 189 |
| Bso31I | GGTCTC | 1 cut(s) | 417 |
| Bsp143I | GATC | 3 cut(s) | 34, 235, 475 |
| BspACI | CCGC | 3 cut(s) | 22, 39, 41 |
| BspFNI | CGCG | 1 cut(s) | 41 |
| BspLI | GGNNCC | 1 cut(s) | 477 |
| BspMI | ACCTGC | 2 cut(s) | 26, 303 |
| BspPI | GGATC | 4 cut(s) | 29, 243, 470, 483 |
| BspTI | CTTAAG | 1 cut(s) | 419 |
| BspTNI | GGTCTC | 1 cut(s) | 417 |
| BsrDI | GCAATG | 1 cut(s) | 55 |
| BsrI | ACTGG | 2 cut(s) | 182, 494 |
| BssECI | CCNNGG | 2 cut(s) | 39, 479 |
| BssMI | GATC | 3 cut(s) | 34, 235, 475 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 460 |
| Bst6I | CTCTTC | 1 cut(s) | 25 |
| BstAFI | CTTAAG | 1 cut(s) | 419 |
| BstDSI | CCRYGG | 1 cut(s) | 39 |
| BstF5I | GGATG | 3 cut(s) | 186, 299, 361 |
| BstFNI | CGCG | 1 cut(s) | 41 |
| BstKTI | GATC | 3 cut(s) | 37, 238, 478 |
| BstMAI | GTCTC | 2 cut(s) | 187, 417 |
| BstMBI | GATC | 3 cut(s) | 34, 235, 475 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 54, 263 |
| BstSCI | CCNGG | 1 cut(s) | 231 |
| BstUI | CGCG | 1 cut(s) | 41 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| BstX2I | RGATCY | 3 cut(s) | 34, 235, 475 |
| BstYI | RGATCY | 3 cut(s) | 34, 235, 475 |
| BtgI | CCRYGG | 1 cut(s) | 39 |
| BtsCI | GGATG | 3 cut(s) | 186, 299, 361 |
| BtsIMutI | CAGTG | 2 cut(s) | 175, 501 |
| BveI | ACCTGC | 2 cut(s) | 26, 303 |
| Cfr42I | CCGCGG | 1 cut(s) | 42 |
| Csp6I | GTAC | 1 cut(s) | 453 |
| CviAII | CATG | 1 cut(s) | 97 |
| CviJI | RGCY | 2 cut(s) | 158, 407 |
| CviKI_1 | RGCY | 2 cut(s) | 158, 407 |
| CviQI | GTAC | 1 cut(s) | 453 |
| DpnI | GATC | 3 cut(s) | 36, 237, 477 |
| DpnII | GATC | 3 cut(s) | 34, 235, 475 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 201 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 25 |
| EarI | CTCTTC | 1 cut(s) | 25 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco31I | GGTCTC | 1 cut(s) | 417 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| FaeI | CATG | 1 cut(s) | 100 |
| FaiI | YATR | 6 cut(s) | 98, 135, 137, 241, 243, 249 |
| FaqI | GGGAC | 1 cut(s) | 189 |
| FatI | CATG | 1 cut(s) | 96 |
| FauI | CCCGC | 1 cut(s) | 46 |
| Fnu4HI | GCNGC | 1 cut(s) | 22 |
| FokI | GGATG | 3 cut(s) | 193, 286, 368 |
| Fsp4HI | GCNGC | 1 cut(s) | 22 |
| FspBI | CTAG | 1 cut(s) | 489 |
| GluI | GCNGC | 1 cut(s) | 22 |
| HapII | CCGG | 1 cut(s) | 232 |
| Hin1II | CATG | 1 cut(s) | 100 |
| HinfI | GANTC | 2 cut(s) | 91, 484 |
| HpaII | CCGG | 1 cut(s) | 232 |
| HphI | GGTGA | 1 cut(s) | 366 |
| Hpy188III | TCNNGA | 1 cut(s) | 322 |
| HpyAV | CCTTC | 2 cut(s) | 38, 64 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 460 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 54, 263 |
| Hsp92II | CATG | 1 cut(s) | 100 |
| KspI | CCGCGG | 1 cut(s) | 42 |
| Kzo9I | GATC | 3 cut(s) | 34, 235, 475 |
| LpnPI | CCDG | 6 cut(s) | 31, 134, 163, 245, 298, 335 |
| LweI | GCATC | 2 cut(s) | 90, 346 |
| MaeI | CTAG | 1 cut(s) | 489 |
| MalI | GATC | 3 cut(s) | 36, 237, 477 |
| MboI | GATC | 3 cut(s) | 34, 235, 475 |
| MboII | GAAGA | 3 cut(s) | 42, 141, 363 |
| MflI | RGATCY | 3 cut(s) | 34, 235, 475 |
| MluCI | AATT | 3 cut(s) | 285, 346, 499 |
| MmeI | TCCRAC | 3 cut(s) | 175, 257, 368 |
| MseI | TTAA | 3 cut(s) | 284, 365, 420 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspCI | CTTAAG | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 232 |
| MspR9I | CCNGG | 1 cut(s) | 233 |
| MvnI | CGCG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 54, 263 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NdeII | GATC | 3 cut(s) | 34, 235, 475 |
| NlaIII | CATG | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 1 cut(s) | 477 |
| PfeI | GAWTC | 2 cut(s) | 91, 484 |
| PfoI | TCCNGGA | 1 cut(s) | 231 |
| PkrI | GCNGC | 1 cut(s) | 23 |
| PspN4I | GGNNCC | 1 cut(s) | 477 |
| PsuI | RGATCY | 3 cut(s) | 34, 235, 475 |
| RsaI | GTAC | 1 cut(s) | 454 |
| RsaNI | GTAC | 1 cut(s) | 453 |
| SacII | CCGCGG | 1 cut(s) | 42 |
| SaqAI | TTAA | 3 cut(s) | 284, 365, 420 |
| SatI | GCNGC | 1 cut(s) | 22 |
| Sau3AI | GATC | 3 cut(s) | 34, 235, 475 |
| ScrFI | CCNGG | 1 cut(s) | 233 |
| SetI | ASST | 7 cut(s) | 20, 160, 277, 284, 317, 346, 437 |
| SfaNI | GCATC | 2 cut(s) | 90, 346 |
| Sfr303I | CCGCGG | 1 cut(s) | 42 |
| SgrBI | CCGCGG | 1 cut(s) | 42 |
| SmlI | CTYRAG | 2 cut(s) | 339, 419 |
| SmoI | CTYRAG | 2 cut(s) | 339, 419 |
| Sse9I | AATT | 3 cut(s) | 285, 346, 499 |
| SsiI | CCGC | 3 cut(s) | 22, 39, 41 |
| SspMI | CTAG | 1 cut(s) | 489 |
| StyD4I | CCNGG | 1 cut(s) | 231 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 2 cut(s) | 167, 460 |
| TaqII | GACCGA | 1 cut(s) | 399 |
| TasI | AATT | 3 cut(s) | 285, 346, 499 |
| TauI | GCSGC | 1 cut(s) | 24 |
| TfiI | GAWTC | 2 cut(s) | 91, 484 |
| Tru1I | TTAA | 3 cut(s) | 284, 365, 420 |
| Tru9I | TTAA | 3 cut(s) | 284, 365, 420 |
| TscAI | CASTG | 2 cut(s) | 182, 501 |
| TspGWI | ACGGA | 2 cut(s) | 23, 452 |
| TspRI | CASTG | 2 cut(s) | 182, 501 |
| Vha464I | CTTAAG | 1 cut(s) | 419 |
| XapI | RAATTY | 1 cut(s) | 499 |
| XspI | CTAG | 1 cut(s) | 489 |