Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 85 |
| AciI | CCGC | 4 cut(s) | 95, 287, 428, 435 |
| AfaI | GTAC | 2 cut(s) | 171, 215 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 270, 424 |
| AgsI | TTSAA | 3 cut(s) | 133, 205, 517 |
| AjnI | CCWGG | 1 cut(s) | 423 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 43, 75 |
| AluBI | AGCT | 1 cut(s) | 36 |
| AluI | AGCT | 1 cut(s) | 36 |
| AspLEI | GCGC | 1 cut(s) | 142 |
| AspS9I | GGNCC | 2 cut(s) | 46, 415 |
| AsuHPI | GGTGA | 1 cut(s) | 341 |
| AsuII | TTCGAA | 1 cut(s) | 464 |
| AvaII | GGWCC | 2 cut(s) | 46, 415 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 458, 490 |
| BbsI | GAAGAC | 1 cut(s) | 533 |
| BccI | CCATC | 3 cut(s) | 326, 401, 438 |
| BciT130I | CCWGG | 1 cut(s) | 425 |
| BmcAI | AGTACT | 1 cut(s) | 215 |
| Bme1390I | CCNGG | 1 cut(s) | 425 |
| Bme18I | GGWCC | 2 cut(s) | 46, 415 |
| BmgT120I | GGNCC | 2 cut(s) | 46, 415 |
| BmiI | GGNNCC | 3 cut(s) | 370, 376, 416 |
| BmrFI | CCNGG | 1 cut(s) | 425 |
| BmsI | GCATC | 1 cut(s) | 288 |
| BpiI | GAAGAC | 1 cut(s) | 533 |
| Bpu14I | TTCGAA | 1 cut(s) | 464 |
| BsaAI | YACGTR | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 1 cut(s) | 363 |
| BsaWI | WCCGGW | 1 cut(s) | 371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 270, 424 |
| Bse1I | ACTGG | 1 cut(s) | 11 |
| BseBI | CCWGG | 1 cut(s) | 425 |
| BseDI | CCNNGG | 1 cut(s) | 363 |
| BseGI | GGATG | 2 cut(s) | 46, 361 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 270, 424 |
| BseNI | ACTGG | 1 cut(s) | 11 |
| BseRI | GAGGAG | 1 cut(s) | 499 |
| BsiSI | CCGG | 1 cut(s) | 372 |
| BslFI | GGGAC | 1 cut(s) | 428 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 270, 424 |
| BsmFI | GGGAC | 1 cut(s) | 428 |
| Bsp119I | TTCGAA | 1 cut(s) | 464 |
| Bsp143I | GATC | 1 cut(s) | 189 |
| Bsp19I | CCATGG | 1 cut(s) | 363 |
| BspACI | CCGC | 4 cut(s) | 95, 287, 428, 435 |
| BspLI | GGNNCC | 3 cut(s) | 370, 376, 416 |
| BspT104I | TTCGAA | 1 cut(s) | 464 |
| BsrI | ACTGG | 1 cut(s) | 11 |
| BssECI | CCNNGG | 1 cut(s) | 363 |
| BssMI | GATC | 1 cut(s) | 189 |
| BssT1I | CCWWGG | 1 cut(s) | 363 |
| Bst2UI | CCWGG | 1 cut(s) | 425 |
| Bst4CI | ACNGT | 3 cut(s) | 198, 298, 404 |
| BstBAI | YACGTR | 1 cut(s) | 270 |
| BstBI | TTCGAA | 1 cut(s) | 464 |
| BstDSI | CCRYGG | 1 cut(s) | 363 |
| BstF5I | GGATG | 2 cut(s) | 46, 361 |
| BstHHI | GCGC | 1 cut(s) | 142 |
| BstKTI | GATC | 1 cut(s) | 192 |
| BstMBI | GATC | 1 cut(s) | 189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstNI | CCWGG | 1 cut(s) | 425 |
| BstSCI | CCNGG | 1 cut(s) | 423 |
| BstV2I | GAAGAC | 1 cut(s) | 533 |
| BtgI | CCRYGG | 1 cut(s) | 363 |
| BtsCI | GGATG | 2 cut(s) | 46, 361 |
| BtsIMutI | CAGTG | 1 cut(s) | 4 |
| CfoI | GCGC | 1 cut(s) | 142 |
| Cfr13I | GGNCC | 2 cut(s) | 46, 415 |
| CseI | GACGC | 1 cut(s) | 522 |
| Csp6I | GTAC | 2 cut(s) | 170, 214 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 8, 43 |
| CviAII | CATG | 3 cut(s) | 235, 364, 497 |
| CviJI | RGCY | 4 cut(s) | 36, 64, 149, 492 |
| CviKI_1 | RGCY | 4 cut(s) | 36, 64, 149, 492 |
| CviQI | GTAC | 2 cut(s) | 170, 214 |
| DpnI | GATC | 1 cut(s) | 191 |
| DpnII | GATC | 1 cut(s) | 189 |
| Eco130I | CCWWGG | 1 cut(s) | 363 |
| Eco47I | GGWCC | 2 cut(s) | 46, 415 |
| EcoRII | CCWGG | 1 cut(s) | 423 |
| EcoT14I | CCWWGG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 126 |
| ErhI | CCWWGG | 1 cut(s) | 363 |
| FaeI | CATG | 3 cut(s) | 238, 367, 500 |
| FaqI | GGGAC | 1 cut(s) | 428 |
| FatI | CATG | 3 cut(s) | 234, 363, 496 |
| FauI | CCCGC | 2 cut(s) | 280, 421 |
| FblI | GTMKAC | 1 cut(s) | 85 |
| FokI | GGATG | 2 cut(s) | 53, 368 |
| GlaI | GCGC | 1 cut(s) | 141 |
| HapII | CCGG | 1 cut(s) | 372 |
| HgaI | GACGC | 1 cut(s) | 522 |
| HhaI | GCGC | 1 cut(s) | 142 |
| Hin1II | CATG | 3 cut(s) | 238, 367, 500 |
| Hin6I | GCGC | 1 cut(s) | 140 |
| HinP1I | GCGC | 1 cut(s) | 140 |
| HincII | GTYRAC | 1 cut(s) | 86 |
| HindII | GTYRAC | 1 cut(s) | 86 |
| HinfI | GANTC | 3 cut(s) | 319, 420, 461 |
| HpaII | CCGG | 1 cut(s) | 372 |
| HphI | GGTGA | 1 cut(s) | 341 |
| Hpy166II | GTNNAC | 1 cut(s) | 86 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 50 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| Hpy8I | GTNNAC | 1 cut(s) | 86 |
| Hpy99I | CGWCG | 1 cut(s) | 544 |
| HpyAV | CCTTC | 3 cut(s) | 241, 405, 460 |
| HpyCH4III | ACNGT | 3 cut(s) | 198, 298, 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 124 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpySE526I | ACGT | 1 cut(s) | 269 |
| Hsp92II | CATG | 3 cut(s) | 238, 367, 500 |
| HspAI | GCGC | 1 cut(s) | 140 |
| Kzo9I | GATC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 233 |
| LpnPI | CCDG | 4 cut(s) | 308, 385, 410, 437 |
| LweI | GCATC | 1 cut(s) | 288 |
| MaeII | ACGT | 1 cut(s) | 269 |
| MaeIII | GTNAC | 1 cut(s) | 300 |
| MalI | GATC | 1 cut(s) | 191 |
| MboI | GATC | 1 cut(s) | 189 |
| MboII | GAAGA | 2 cut(s) | 497, 538 |
| MluCI | AATT | 2 cut(s) | 20, 77 |
| MlyI | GAGTC | 1 cut(s) | 429 |
| MmeI | TCCRAC | 1 cut(s) | 528 |
| MnlI | CCTC | 7 cut(s) | 37, 91, 156, 232, 309, 477, 547 |
| Mph1103I | ATGCAT | 1 cut(s) | 126 |
| MseI | TTAA | 2 cut(s) | 11, 248 |
| MspI | CCGG | 1 cut(s) | 372 |
| MspR9I | CCNGG | 1 cut(s) | 425 |
| MvaI | CCWGG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NcoI | CCATGG | 1 cut(s) | 363 |
| NdeII | GATC | 1 cut(s) | 189 |
| NlaIII | CATG | 3 cut(s) | 238, 367, 500 |
| NlaIV | GGNNCC | 3 cut(s) | 370, 376, 416 |
| NsiI | ATGCAT | 1 cut(s) | 126 |
| NspV | TTCGAA | 1 cut(s) | 464 |
| PfeI | GAWTC | 2 cut(s) | 319, 461 |
| PflFI | GACNNNGTC | 2 cut(s) | 419, 532 |
| PleI | GAGTC | 1 cut(s) | 428 |
| PpsI | GAGTC | 1 cut(s) | 428 |
| Ppu21I | YACGTR | 1 cut(s) | 270 |
| Psp6I | CCWGG | 1 cut(s) | 423 |
| PspGI | CCWGG | 1 cut(s) | 423 |
| PspN4I | GGNNCC | 3 cut(s) | 370, 376, 416 |
| PspPI | GGNCC | 2 cut(s) | 46, 415 |
| PsyI | GACNNNGTC | 2 cut(s) | 419, 532 |
| RsaI | GTAC | 2 cut(s) | 171, 215 |
| RsaNI | GTAC | 2 cut(s) | 170, 214 |
| SalI | GTCGAC | 1 cut(s) | 84 |
| SaqAI | TTAA | 2 cut(s) | 11, 248 |
| Sau3AI | GATC | 1 cut(s) | 189 |
| Sau96I | GGNCC | 2 cut(s) | 46, 415 |
| ScaI | AGTACT | 1 cut(s) | 215 |
| SchI | GAGTC | 1 cut(s) | 429 |
| ScrFI | CCNGG | 1 cut(s) | 425 |
| SetI | ASST | 6 cut(s) | 38, 48, 91, 167, 272, 327 |
| SfaNI | GCATC | 1 cut(s) | 288 |
| SfuI | TTCGAA | 1 cut(s) | 464 |
| SinI | GGWCC | 2 cut(s) | 46, 415 |
| Sse9I | AATT | 2 cut(s) | 20, 77 |
| SsiI | CCGC | 4 cut(s) | 95, 287, 428, 435 |
| StyD4I | CCNGG | 1 cut(s) | 423 |
| StyI | CCWWGG | 1 cut(s) | 363 |
| TaaI | ACNGT | 3 cut(s) | 198, 298, 404 |
| TaiI | ACGT | 1 cut(s) | 272 |
| TaqI | TCGA | 4 cut(s) | 85, 115, 292, 464 |
| TaqII | GACCGA | 1 cut(s) | 432 |
| TasI | AATT | 2 cut(s) | 20, 77 |
| TatI | WGTACW | 1 cut(s) | 213 |
| TfiI | GAWTC | 2 cut(s) | 319, 461 |
| Tru1I | TTAA | 2 cut(s) | 11, 248 |
| Tru9I | TTAA | 2 cut(s) | 11, 248 |
| TspDTI | ATGAA | 2 cut(s) | 223, 497 |
| TspGWI | ACGGA | 1 cut(s) | 382 |
| Tth111I | GACNNNGTC | 2 cut(s) | 419, 532 |
| VpaK11BI | GGWCC | 2 cut(s) | 46, 415 |
| XmiI | GTMKAC | 1 cut(s) | 85 |
| ZrmI | AGTACT | 1 cut(s) | 215 |
| Zsp2I | ATGCAT | 1 cut(s) | 126 |