Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 665 |
| Acc65I | GGTACC | 1 cut(s) | 295 |
| AccB1I | GGYRCC | 2 cut(s) | 92, 295 |
| AccI | GTMKAC | 1 cut(s) | 215 |
| AciI | CCGC | 3 cut(s) | 366, 408, 861 |
| AclWI | GGATC | 2 cut(s) | 45, 58 |
| AfaI | GTAC | 7 cut(s) | 279, 297, 341, 350, 406, 464, 626 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 102, 418 |
| AflII | CTTAAG | 1 cut(s) | 593 |
| AflIII | ACRYGT | 1 cut(s) | 459 |
| AgsI | TTSAA | 4 cut(s) | 602, 915, 969, 975 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 771, 803 |
| AluBI | AGCT | 5 cut(s) | 179, 474, 526, 564, 897 |
| AluI | AGCT | 5 cut(s) | 179, 474, 526, 564, 897 |
| Alw26I | GTCTC | 2 cut(s) | 224, 525 |
| AlwI | GGATC | 2 cut(s) | 45, 58 |
| ApeKI | GCWGC | 1 cut(s) | 999 |
| Asp718I | GGTACC | 1 cut(s) | 295 |
| AspS9I | GGNCC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 4 cut(s) | 156, 534, 788, 939 |
| AvaII | GGWCC | 1 cut(s) | 363 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 388, 421 |
| BamHI | GGATCC | 1 cut(s) | 50 |
| BanI | GGYRCC | 2 cut(s) | 92, 295 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 261, 279, 293, 311 |
| BbsI | GAAGAC | 3 cut(s) | 207, 402, 574 |
| BbvI | GCAGC | 1 cut(s) | 1011 |
| BccI | CCATC | 2 cut(s) | 143, 949 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BcoDI | GTCTC | 2 cut(s) | 224, 525 |
| BfaI | CTAG | 3 cut(s) | 325, 400, 871 |
| BfrI | CTTAAG | 1 cut(s) | 593 |
| BfuAI | ACCTGC | 1 cut(s) | 665 |
| BisI | GCNGC | 2 cut(s) | 862, 1000 |
| BlsI | GCNGC | 2 cut(s) | 863, 1001 |
| Bme18I | GGWCC | 1 cut(s) | 363 |
| BmgT120I | GGNCC | 1 cut(s) | 363 |
| BmiI | GGNNCC | 4 cut(s) | 52, 94, 297, 364 |
| BmrI | ACTGGG | 1 cut(s) | 782 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BmuI | ACTGGG | 1 cut(s) | 782 |
| BpiI | GAAGAC | 3 cut(s) | 207, 402, 574 |
| BpmI | CTGGAG | 1 cut(s) | 137 |
| Bsa29I | ATCGAT | 1 cut(s) | 136 |
| BsaAI | YACGTR | 1 cut(s) | 462 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 950 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 138, 168 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 102, 418 |
| Bse1I | ACTGG | 2 cut(s) | 120, 777 |
| Bse3DI | GCAATG | 1 cut(s) | 554 |
| BseCI | ATCGAT | 1 cut(s) | 136 |
| BseDI | CCNNGG | 2 cut(s) | 54, 950 |
| BseGI | GGATG | 2 cut(s) | 245, 960 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 102, 418 |
| BseMI | GCAATG | 1 cut(s) | 554 |
| BseMII | CTCAG | 2 cut(s) | 213, 907 |
| BseNI | ACTGG | 2 cut(s) | 120, 777 |
| BseRI | GAGGAG | 2 cut(s) | 159, 807 |
| BseXI | GCAGC | 1 cut(s) | 1011 |
| BseYI | CCCAGC | 2 cut(s) | 368, 560 |
| BshNI | GGYRCC | 2 cut(s) | 92, 295 |
| BshVI | ATCGAT | 1 cut(s) | 136 |
| BslFI | GGGAC | 2 cut(s) | 67, 376 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 102, 418 |
| BsmAI | GTCTC | 2 cut(s) | 224, 525 |
| BsmFI | GGGAC | 2 cut(s) | 67, 376 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| Bsp143I | GATC | 3 cut(s) | 50, 133, 242 |
| Bsp19I | CCATGG | 1 cut(s) | 54 |
| BspACI | CCGC | 3 cut(s) | 366, 408, 861 |
| BspCNI | CTCAG | 2 cut(s) | 214, 906 |
| BspDI | ATCGAT | 1 cut(s) | 136 |
| BspLI | GGNNCC | 4 cut(s) | 52, 94, 297, 364 |
| BspMI | ACCTGC | 1 cut(s) | 665 |
| BspPI | GGATC | 2 cut(s) | 45, 58 |
| BspQI | GCTCTTC | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 2 cut(s) | 92, 295 |
| BspTI | CTTAAG | 1 cut(s) | 593 |
| BsrDI | GCAATG | 1 cut(s) | 554 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| BsrI | ACTGG | 2 cut(s) | 120, 777 |
| BssECI | CCNNGG | 2 cut(s) | 54, 950 |
| BssMI | GATC | 3 cut(s) | 50, 133, 242 |
| BssNAI | GTATAC | 1 cut(s) | 216 |
| BssT1I | CCWWGG | 2 cut(s) | 54, 950 |
| Bst1107I | GTATAC | 1 cut(s) | 216 |
| Bst4CI | ACNGT | 4 cut(s) | 20, 188, 353, 877 |
| Bst6I | CTCTTC | 4 cut(s) | 169, 282, 476, 774 |
| BstAFI | CTTAAG | 1 cut(s) | 593 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstBAI | YACGTR | 1 cut(s) | 462 |
| BstDEI | CTNAG | 2 cut(s) | 222, 893 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 2 cut(s) | 245, 960 |
| BstKTI | GATC | 3 cut(s) | 53, 136, 245 |
| BstMAI | GTCTC | 2 cut(s) | 224, 525 |
| BstMBI | GATC | 3 cut(s) | 50, 133, 242 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 523, 867, 894 |
| BstNSI | RCATGY | 2 cut(s) | 340, 888 |
| BstV1I | GCAGC | 1 cut(s) | 1011 |
| BstV2I | GAAGAC | 3 cut(s) | 207, 402, 574 |
| BstX2I | RGATCY | 1 cut(s) | 50 |
| BstYI | RGATCY | 1 cut(s) | 50 |
| BstZ17I | GTATAC | 1 cut(s) | 216 |
| Bsu15I | ATCGAT | 1 cut(s) | 136 |
| BsuTUI | ATCGAT | 1 cut(s) | 136 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 245, 960 |
| BtsIMutI | CAGTG | 1 cut(s) | 219 |
| BveI | ACCTGC | 1 cut(s) | 665 |
| Cfr13I | GGNCC | 1 cut(s) | 363 |
| ClaI | ATCGAT | 1 cut(s) | 136 |
| Csp6I | GTAC | 7 cut(s) | 278, 296, 340, 349, 405, 463, 625 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 208, 243 |
| CviAII | CATG | 8 cut(s) | 55, 300, 337, 518, 618, 637, 692, 885 |
| CviQI | GTAC | 7 cut(s) | 278, 296, 340, 349, 405, 463, 625 |
| DdeI | CTNAG | 2 cut(s) | 222, 893 |
| DpnI | GATC | 3 cut(s) | 52, 135, 244 |
| DpnII | GATC | 3 cut(s) | 50, 133, 242 |
| DraI | TTTAAA | 1 cut(s) | 551 |
| Eam1104I | CTCTTC | 4 cut(s) | 169, 282, 476, 774 |
| EarI | CTCTTC | 4 cut(s) | 169, 282, 476, 774 |
| Eco130I | CCWWGG | 2 cut(s) | 54, 950 |
| Eco47I | GGWCC | 1 cut(s) | 363 |
| EcoT14I | CCWWGG | 2 cut(s) | 54, 950 |
| EcoT22I | ATGCAT | 1 cut(s) | 638 |
| ErhI | CCWWGG | 2 cut(s) | 54, 950 |
| FaeI | CATG | 8 cut(s) | 58, 303, 340, 521, 621, 640, 695, 888 |
| FaqI | GGGAC | 2 cut(s) | 67, 376 |
| FatI | CATG | 8 cut(s) | 54, 299, 336, 517, 617, 636, 691, 884 |
| FblI | GTMKAC | 1 cut(s) | 215 |
| Fnu4HI | GCNGC | 2 cut(s) | 862, 1000 |
| FokI | GGATG | 2 cut(s) | 252, 967 |
| Fsp4HI | GCNGC | 2 cut(s) | 862, 1000 |
| FspBI | CTAG | 3 cut(s) | 325, 400, 871 |
| GluI | GCNGC | 2 cut(s) | 862, 1000 |
| GsaI | CCCAGC | 2 cut(s) | 372, 564 |
| GsuI | CTGGAG | 1 cut(s) | 137 |
| Hin1II | CATG | 8 cut(s) | 58, 303, 340, 521, 621, 640, 695, 888 |
| HincII | GTYRAC | 1 cut(s) | 611 |
| HindII | GTYRAC | 1 cut(s) | 611 |
| HphI | GGTGA | 4 cut(s) | 156, 534, 788, 939 |
| Hpy166II | GTNNAC | 4 cut(s) | 184, 216, 611, 770 |
| Hpy8I | GTNNAC | 4 cut(s) | 184, 216, 611, 770 |
| HpyAV | CCTTC | 2 cut(s) | 41, 263 |
| HpyCH4III | ACNGT | 4 cut(s) | 20, 188, 353, 877 |
| HpyCH4IV | ACGT | 1 cut(s) | 461 |
| HpyCH4V | TGCA | 4 cut(s) | 210, 517, 621, 636 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 523, 867, 894 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 893 |
| HpySE526I | ACGT | 1 cut(s) | 461 |
| Hsp92II | CATG | 8 cut(s) | 58, 303, 340, 521, 621, 640, 695, 888 |
| KpnI | GGTACC | 1 cut(s) | 299 |
| Kzo9I | GATC | 3 cut(s) | 50, 133, 242 |
| LguI | GCTCTTC | 1 cut(s) | 169 |
| LmnI | GCTCC | 1 cut(s) | 671 |
| Lsp1109I | GCAGC | 1 cut(s) | 1011 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 3 cut(s) | 325, 400, 871 |
| MaeII | ACGT | 1 cut(s) | 461 |
| MaeIII | GTNAC | 4 cut(s) | 490, 720, 934, 978 |
| MalI | GATC | 3 cut(s) | 52, 135, 244 |
| MboI | GATC | 3 cut(s) | 50, 133, 242 |
| MflI | RGATCY | 1 cut(s) | 50 |
| MluCI | AATT | 5 cut(s) | 40, 355, 568, 809, 970 |
| MmeI | TCCRAC | 1 cut(s) | 634 |
| Mph1103I | ATGCAT | 1 cut(s) | 638 |
| MseI | TTAA | 7 cut(s) | 501, 550, 567, 594, 630, 808, 901 |
| MspA1I | CMGCKG | 1 cut(s) | 368 |
| MspCI | CTTAAG | 1 cut(s) | 593 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 523, 867, 894 |
| NcoI | CCATGG | 1 cut(s) | 54 |
| NdeII | GATC | 3 cut(s) | 50, 133, 242 |
| NlaIII | CATG | 8 cut(s) | 58, 303, 340, 521, 621, 640, 695, 888 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 94, 297, 364 |
| NsiI | ATGCAT | 1 cut(s) | 638 |
| NspI | RCATGY | 2 cut(s) | 340, 888 |
| PciSI | GCTCTTC | 1 cut(s) | 169 |
| PkrI | GCNGC | 2 cut(s) | 863, 1001 |
| Ppu21I | YACGTR | 1 cut(s) | 462 |
| PspFI | CCCAGC | 2 cut(s) | 368, 560 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 94, 297, 364 |
| PspPI | GGNCC | 1 cut(s) | 363 |
| PsuI | RGATCY | 1 cut(s) | 50 |
| RsaI | GTAC | 7 cut(s) | 279, 297, 341, 350, 406, 464, 626 |
| RsaNI | GTAC | 7 cut(s) | 278, 296, 340, 349, 405, 463, 625 |
| SapI | GCTCTTC | 1 cut(s) | 169 |
| SaqAI | TTAA | 7 cut(s) | 501, 550, 567, 594, 630, 808, 901 |
| SatI | GCNGC | 2 cut(s) | 862, 1000 |
| Sau3AI | GATC | 3 cut(s) | 50, 133, 242 |
| Sau96I | GGNCC | 1 cut(s) | 363 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SinI | GGWCC | 1 cut(s) | 363 |
| SmlI | CTYRAG | 1 cut(s) | 593 |
| SmoI | CTYRAG | 1 cut(s) | 593 |
| Sse9I | AATT | 5 cut(s) | 40, 355, 568, 809, 970 |
| SsiI | CCGC | 3 cut(s) | 366, 408, 861 |
| SspI | AATATT | 1 cut(s) | 728 |
| SspMI | CTAG | 3 cut(s) | 325, 400, 871 |
| StyI | CCWWGG | 2 cut(s) | 54, 950 |
| TaaI | ACNGT | 4 cut(s) | 20, 188, 353, 877 |
| TaiI | ACGT | 1 cut(s) | 464 |
| TaqI | TCGA | 4 cut(s) | 136, 345, 443, 715 |
| TasI | AATT | 5 cut(s) | 40, 355, 568, 809, 970 |
| TatI | WGTACW | 3 cut(s) | 277, 339, 624 |
| TauI | GCSGC | 1 cut(s) | 864 |
| Tru1I | TTAA | 7 cut(s) | 501, 550, 567, 594, 630, 808, 901 |
| Tru9I | TTAA | 7 cut(s) | 501, 550, 567, 594, 630, 808, 901 |
| TscAI | CASTG | 1 cut(s) | 226 |
| TseI | GCWGC | 1 cut(s) | 999 |
| TspDTI | ATGAA | 3 cut(s) | 208, 300, 680 |
| TspRI | CASTG | 1 cut(s) | 226 |
| Vha464I | CTTAAG | 1 cut(s) | 593 |
| VpaK11BI | GGWCC | 1 cut(s) | 363 |
| XceI | RCATGY | 2 cut(s) | 340, 888 |
| XmiI | GTMKAC | 1 cut(s) | 215 |
| XspI | CTAG | 3 cut(s) | 325, 400, 871 |
| Zsp2I | ATGCAT | 1 cut(s) | 638 |