ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1369 |
| AccB1I | GGYRCC | 1 cut(s) | 1346 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1038 |
| AccBSI | CCGCTC | 1 cut(s) | 344 |
| AccII | CGCG | 1 cut(s) | 697 |
| AciI | CCGC | 5 cut(s) | 140, 344, 695, 697, 1335 |
| AcsI | RAATTY | 1 cut(s) | 979 |
| AcuI | CTGAAG | 2 cut(s) | 547, 1445 |
| AcvI | CACGTG | 1 cut(s) | 1328 |
| AfaI | GTAC | 3 cut(s) | 715, 785, 1219 |
| AfeI | AGCGCT | 1 cut(s) | 568 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 75, 103, 275, 1038 |
| AflIII | ACRYGT | 1 cut(s) | 1246 |
| AgsI | TTSAA | 9 cut(s) | 102, 127, 383, 429, 460, 490, 854, 914, 974 |
| AjnI | CCWGG | 3 cut(s) | 57, 199, 1075 |
| Alw21I | GWGCWC | 1 cut(s) | 314 |
| Alw26I | GTCTC | 1 cut(s) | 1055 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1076 |
| Aor51HI | AGCGCT | 1 cut(s) | 568 |
| AoxI | GGCC | 4 cut(s) | 1029, 1275, 1409, 1416 |
| ApeKI | GCWGC | 8 cut(s) | 72, 472, 569, 925, 1070, 1322, 1400, 1468 |
| ApoI | RAATTY | 1 cut(s) | 979 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 362 |
| AspLEI | GCGC | 2 cut(s) | 550, 569 |
| AspS9I | GGNCC | 3 cut(s) | 61, 1275, 1410 |
| AsuHPI | GGTGA | 3 cut(s) | 11, 222, 544 |
| AvaII | GGWCC | 1 cut(s) | 61 |
| AxyI | CCTNAGG | 1 cut(s) | 1026 |
| BanI | GGYRCC | 1 cut(s) | 1346 |
| BauI | CACGAG | 1 cut(s) | 1120 |
| BbrPI | CACGTG | 1 cut(s) | 1328 |
| Bbv12I | GWGCWC | 1 cut(s) | 314 |
| BbvI | GCAGC | 8 cut(s) | 84, 484, 556, 912, 1082, 1334, 1412, 1480 |
| BccI | CCATC | 5 cut(s) | 271, 635, 755, 1032, 1149 |
| BceAI | ACGGC | 1 cut(s) | 1262 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1301, 1335 |
| BciT130I | CCWGG | 3 cut(s) | 59, 201, 1077 |
| BciVI | GTATCC | 2 cut(s) | 638, 1526 |
| BclI | TGATCA | 2 cut(s) | 877, 1281 |
| BcoDI | GTCTC | 1 cut(s) | 1055 |
| BfaI | CTAG | 2 cut(s) | 1101, 1356 |
| BfmI | CTRYAG | 2 cut(s) | 926, 1320 |
| BfoI | RGCGCY | 1 cut(s) | 570 |
| BfuAI | ACCTGC | 1 cut(s) | 1369 |
| BfuI | GTATCC | 2 cut(s) | 638, 1526 |
| BisI | GCNGC | 9 cut(s) | 73, 140, 473, 570, 926, 1071, 1323, 1401, 1469 |
| BlpI | GCTNAGC | 1 cut(s) | 807 |
| BlsI | GCNGC | 9 cut(s) | 74, 141, 474, 571, 927, 1072, 1324, 1402, 1470 |
| Bme1390I | CCNGG | 3 cut(s) | 59, 201, 1077 |
| Bme18I | GGWCC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 1275, 1410 |
| BmiI | GGNNCC | 2 cut(s) | 280, 1348 |
| BmrFI | CCNGG | 3 cut(s) | 59, 201, 1077 |
| BmsI | GCATC | 2 cut(s) | 1268, 1360 |
| BpmI | CTGGAG | 2 cut(s) | 97, 119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1451 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 807 |
| BsaAI | YACGTR | 1 cut(s) | 1328 |
| BsaJI | CCNNGG | 6 cut(s) | 199, 497, 695, 1076, 1199, 1413 |
| BsaWI | WCCGGW | 1 cut(s) | 275 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 75, 103, 275, 1038 |
| Bse118I | RCCGGY | 2 cut(s) | 68, 385 |
| Bse1I | ACTGG | 3 cut(s) | 1231, 1235, 1350 |
| Bse21I | CCTNAGG | 1 cut(s) | 1026 |
| Bse3DI | GCAATG | 2 cut(s) | 592, 1393 |
| BseBI | CCWGG | 3 cut(s) | 59, 201, 1077 |
| BseDI | CCNNGG | 6 cut(s) | 199, 497, 695, 1076, 1199, 1413 |
| BseGI | GGATG | 4 cut(s) | 312, 766, 970, 1147 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 75, 103, 275, 1038 |
| BseMI | GCAATG | 2 cut(s) | 592, 1393 |
| BseMII | CTCAG | 4 cut(s) | 569, 827, 957, 1017 |
| BseNI | ACTGG | 3 cut(s) | 1231, 1235, 1350 |
| BseRI | GAGGAG | 3 cut(s) | 14, 150, 972 |
| BseXI | GCAGC | 8 cut(s) | 84, 484, 556, 912, 1082, 1334, 1412, 1480 |
| BseYI | CCCAGC | 1 cut(s) | 81 |
| BsgI | GTGCAG | 1 cut(s) | 1133 |
| Bsh1236I | CGCG | 1 cut(s) | 697 |
| Bsh1285I | CGRYCG | 1 cut(s) | 97 |
| BshFI | GGCC | 4 cut(s) | 1031, 1277, 1411, 1418 |
| BshNI | GGYRCC | 1 cut(s) | 1346 |
| BsiEI | CGRYCG | 1 cut(s) | 97 |
| BsiHKAI | GWGCWC | 1 cut(s) | 314 |
| BsiSI | CCGG | 3 cut(s) | 69, 276, 386 |
| BslFI | GGGAC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 75, 103, 275, 1038 |
| BsmAI | GTCTC | 1 cut(s) | 1055 |
| BsmBI | CGTCTC | 1 cut(s) | 1055 |
| BsmFI | GGGAC | 1 cut(s) | 99 |
| BsnI | GGCC | 4 cut(s) | 1031, 1277, 1411, 1418 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp1407I | TGTACA | 2 cut(s) | 713, 783 |
| Bsp143I | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 807 |
| BspACI | CCGC | 5 cut(s) | 140, 344, 695, 697, 1335 |
| BspANI | GGCC | 4 cut(s) | 1031, 1277, 1411, 1418 |
| BspCNI | CTCAG | 4 cut(s) | 568, 826, 956, 1018 |
| BspFNI | CGCG | 1 cut(s) | 697 |
| BspLI | GGNNCC | 2 cut(s) | 280, 1348 |
| BspMAI | CTGCAG | 2 cut(s) | 930, 1324 |
| BspMI | ACCTGC | 1 cut(s) | 1369 |
| BspT107I | GGYRCC | 1 cut(s) | 1346 |
| BsrBI | CCGCTC | 1 cut(s) | 344 |
| BsrDI | GCAATG | 2 cut(s) | 592, 1393 |
| BsrFI | RCCGGY | 2 cut(s) | 68, 385 |
| BsrGI | TGTACA | 2 cut(s) | 713, 783 |
| BsrI | ACTGG | 3 cut(s) | 1231, 1235, 1350 |
| BssAI | RCCGGY | 2 cut(s) | 68, 385 |
| BssECI | CCNNGG | 6 cut(s) | 199, 497, 695, 1076, 1199, 1413 |
| BssMI | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| BssSI | CACGAG | 1 cut(s) | 1120 |
| BssT1I | CCWWGG | 3 cut(s) | 497, 1199, 1413 |
| Bst2BI | CACGAG | 1 cut(s) | 1120 |
| Bst2UI | CCWGG | 3 cut(s) | 59, 201, 1077 |
| Bst4CI | ACNGT | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 2 cut(s) | 264, 1464 |
| BstAUI | TGTACA | 2 cut(s) | 713, 783 |
| BstBAI | YACGTR | 1 cut(s) | 1328 |
| BstC8I | GCNNGC | 2 cut(s) | 335, 1257 |
| BstDEI | CTNAG | 6 cut(s) | 555, 807, 813, 943, 1026, 1451 |
| BstDSI | CCRYGG | 1 cut(s) | 695 |
| BstF5I | GGATG | 4 cut(s) | 312, 766, 970, 1147 |
| BstFNI | CGCG | 1 cut(s) | 697 |
| BstH2I | RGCGCY | 1 cut(s) | 570 |
| BstHHI | GCGC | 2 cut(s) | 550, 569 |
| BstKTI | GATC | 5 cut(s) | 755, 771, 830, 880, 1284 |
| BstMAI | GTCTC | 1 cut(s) | 1055 |
| BstMBI | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| BstMCI | CGRYCG | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 78, 1361, 1370, 1452 |
| BstNI | CCWGG | 3 cut(s) | 59, 201, 1077 |
| BstNSI | RCATGY | 1 cut(s) | 1250 |
| BstSCI | CCNGG | 3 cut(s) | 57, 199, 1075 |
| BstSFI | CTRYAG | 2 cut(s) | 926, 1320 |
| BstUI | CGCG | 1 cut(s) | 697 |
| BstV1I | GCAGC | 8 cut(s) | 84, 484, 556, 912, 1082, 1334, 1412, 1480 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1026 |
| BsuI | GTATCC | 2 cut(s) | 638, 1526 |
| BsuRI | GGCC | 4 cut(s) | 1031, 1277, 1411, 1418 |
| BtgI | CCRYGG | 1 cut(s) | 695 |
| BtsCI | GGATG | 4 cut(s) | 312, 766, 970, 1147 |
| BtsIMutI | CAGTG | 4 cut(s) | 366, 1242, 1357, 1401 |
| BveI | ACCTGC | 1 cut(s) | 1369 |
| Cac8I | GCNNGC | 2 cut(s) | 335, 1257 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1076 |
| CfoI | GCGC | 2 cut(s) | 550, 569 |
| Cfr10I | RCCGGY | 2 cut(s) | 68, 385 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 1275, 1410 |
| Cfr42I | CCGCGG | 1 cut(s) | 698 |
| Csp6I | GTAC | 3 cut(s) | 714, 784, 1218 |
| CviAII | CATG | 6 cut(s) | 37, 43, 235, 433, 803, 1247 |
| CviQI | GTAC | 3 cut(s) | 714, 784, 1218 |
| DdeI | CTNAG | 6 cut(s) | 555, 807, 813, 943, 1026, 1451 |
| DpnI | GATC | 5 cut(s) | 754, 770, 829, 879, 1283 |
| DpnII | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| Eam1104I | CTCTTC | 2 cut(s) | 264, 1464 |
| EarI | CTCTTC | 2 cut(s) | 264, 1464 |
| Eco130I | CCWWGG | 3 cut(s) | 497, 1199, 1413 |
| Eco47I | GGWCC | 1 cut(s) | 61 |
| Eco47III | AGCGCT | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 2 cut(s) | 547, 1445 |
| Eco72I | CACGTG | 1 cut(s) | 1328 |
| Eco81I | CCTNAGG | 1 cut(s) | 1026 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1410 |
| EcoRII | CCWGG | 3 cut(s) | 57, 199, 1075 |
| EcoT14I | CCWWGG | 3 cut(s) | 497, 1199, 1413 |
| ErhI | CCWWGG | 3 cut(s) | 497, 1199, 1413 |
| Esp3I | CGTCTC | 1 cut(s) | 1055 |
| FaeI | CATG | 6 cut(s) | 40, 46, 238, 436, 806, 1250 |
| FaqI | GGGAC | 1 cut(s) | 99 |
| FatI | CATG | 6 cut(s) | 36, 42, 234, 432, 802, 1246 |
| FbaI | TGATCA | 2 cut(s) | 877, 1281 |
| Fnu4HI | GCNGC | 9 cut(s) | 73, 140, 473, 570, 926, 1071, 1323, 1401, 1469 |
| FokI | GGATG | 4 cut(s) | 319, 773, 977, 1154 |
| Fsp4HI | GCNGC | 9 cut(s) | 73, 140, 473, 570, 926, 1071, 1323, 1401, 1469 |
| FspBI | CTAG | 2 cut(s) | 1101, 1356 |
| GlaI | GCGC | 2 cut(s) | 549, 568 |
| GluI | GCNGC | 9 cut(s) | 73, 140, 473, 570, 926, 1071, 1323, 1401, 1469 |
| GsaI | CCCAGC | 1 cut(s) | 85 |
| GsuI | CTGGAG | 2 cut(s) | 97, 119 |
| HaeII | RGCGCY | 1 cut(s) | 570 |
| HaeIII | GGCC | 4 cut(s) | 1031, 1277, 1411, 1418 |
| HapII | CCGG | 3 cut(s) | 69, 276, 386 |
| HhaI | GCGC | 2 cut(s) | 550, 569 |
| Hin1II | CATG | 6 cut(s) | 40, 46, 238, 436, 806, 1250 |
| Hin6I | GCGC | 2 cut(s) | 548, 567 |
| HinP1I | GCGC | 2 cut(s) | 548, 567 |
| HincII | GTYRAC | 3 cut(s) | 193, 467, 819 |
| HindII | GTYRAC | 3 cut(s) | 193, 467, 819 |
| HinfI | GANTC | 5 cut(s) | 87, 289, 452, 610, 935 |
| HpaI | GTTAAC | 1 cut(s) | 193 |
| HpaII | CCGG | 3 cut(s) | 69, 276, 386 |
| HphI | GGTGA | 3 cut(s) | 11, 222, 544 |
| Hpy166II | GTNNAC | 6 cut(s) | 193, 366, 467, 714, 784, 819 |
| Hpy188III | TCNNGA | 2 cut(s) | 1139, 1265 |
| Hpy8I | GTNNAC | 6 cut(s) | 193, 366, 467, 714, 784, 819 |
| HpyAV | CCTTC | 8 cut(s) | 22, 153, 186, 343, 736, 1036, 1177, 1289 |
| HpyCH4III | ACNGT | 1 cut(s) | 98 |
| HpyCH4IV | ACGT | 2 cut(s) | 1064, 1327 |
| HpyCH4V | TGCA | 7 cut(s) | 597, 928, 1055, 1070, 1114, 1322, 1513 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 78, 1361, 1370, 1452 |
| HpyF3I | CTNAG | 6 cut(s) | 555, 807, 813, 943, 1026, 1451 |
| HpySE526I | ACGT | 2 cut(s) | 1064, 1327 |
| Hsp92II | CATG | 6 cut(s) | 40, 46, 238, 436, 806, 1250 |
| HspAI | GCGC | 2 cut(s) | 548, 567 |
| Ksp22I | TGATCA | 2 cut(s) | 877, 1281 |
| KspAI | GTTAAC | 1 cut(s) | 193 |
| KspI | CCGCGG | 1 cut(s) | 698 |
| Kzo9I | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| LmnI | GCTCC | 9 cut(s) | 78, 278, 341, 352, 577, 1004, 1078, 1203, 1252 |
| Lsp1109I | GCAGC | 8 cut(s) | 84, 484, 556, 912, 1082, 1334, 1412, 1480 |
| LweI | GCATC | 2 cut(s) | 1268, 1360 |
| MaeI | CTAG | 2 cut(s) | 1101, 1356 |
| MaeII | ACGT | 2 cut(s) | 1064, 1327 |
| MaeIII | GTNAC | 5 cut(s) | 129, 794, 919, 992, 1526 |
| MalI | GATC | 5 cut(s) | 754, 770, 829, 879, 1283 |
| MbiI | CCGCTC | 1 cut(s) | 344 |
| MboI | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| MboII | GAAGA | 8 cut(s) | 171, 251, 390, 414, 417, 518, 751, 1451 |
| MfeI | CAATTG | 2 cut(s) | 649, 724 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 9 cut(s) | 49, 649, 724, 777, 909, 979, 1086, 1104, 1438 |
| MlyI | GAGTC | 4 cut(s) | 81, 298, 604, 929 |
| MmeI | TCCRAC | 2 cut(s) | 117, 293 |
| MroXI | GAANNNNTTC | 1 cut(s) | 362 |
| MseI | TTAA | 1 cut(s) | 192 |
| MslI | CAYNNNNRTG | 2 cut(s) | 41, 801 |
| MspA1I | CMGCKG | 3 cut(s) | 75, 697, 1403 |
| MspI | CCGG | 3 cut(s) | 69, 276, 386 |
| MspR9I | CCNGG | 3 cut(s) | 59, 201, 1077 |
| MunI | CAATTG | 2 cut(s) | 649, 724 |
| MvaI | CCWGG | 3 cut(s) | 59, 201, 1077 |
| MvnI | CGCG | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 78, 1361, 1370, 1452 |
| NdeII | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| NlaIII | CATG | 6 cut(s) | 40, 46, 238, 436, 806, 1250 |
| NlaIV | GGNNCC | 2 cut(s) | 280, 1348 |
| NmuCI | GTSAC | 3 cut(s) | 129, 794, 919 |
| NspI | RCATGY | 1 cut(s) | 1250 |
| PciI | ACATGT | 1 cut(s) | 1246 |
| PdmI | GAANNNNTTC | 1 cut(s) | 362 |
| PfeI | GAWTC | 1 cut(s) | 452 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1038 |
| PkrI | GCNGC | 9 cut(s) | 74, 141, 474, 571, 927, 1072, 1324, 1402, 1470 |
| PleI | GAGTC | 4 cut(s) | 81, 297, 604, 929 |
| PmaCI | CACGTG | 1 cut(s) | 1328 |
| PmlI | CACGTG | 1 cut(s) | 1328 |
| PpsI | GAGTC | 4 cut(s) | 81, 297, 604, 929 |
| Ppu21I | YACGTR | 1 cut(s) | 1328 |
| PscI | ACATGT | 1 cut(s) | 1246 |
| Psp6I | CCWGG | 3 cut(s) | 57, 199, 1075 |
| PspCI | CACGTG | 1 cut(s) | 1328 |
| PspFI | CCCAGC | 1 cut(s) | 81 |
| PspGI | CCWGG | 3 cut(s) | 57, 199, 1075 |
| PspN4I | GGNNCC | 2 cut(s) | 280, 1348 |
| PspPI | GGNCC | 3 cut(s) | 61, 1275, 1410 |
| PstI | CTGCAG | 2 cut(s) | 930, 1324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1076 |
| PvuII | CAGCTG | 2 cut(s) | 75, 1403 |
| RsaI | GTAC | 3 cut(s) | 715, 785, 1219 |
| RsaNI | GTAC | 3 cut(s) | 714, 784, 1218 |
| RseI | CAYNNNNRTG | 2 cut(s) | 41, 801 |
| SacII | CCGCGG | 1 cut(s) | 698 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| SatI | GCNGC | 9 cut(s) | 73, 140, 473, 570, 926, 1071, 1323, 1401, 1469 |
| Sau3AI | GATC | 5 cut(s) | 752, 768, 827, 877, 1281 |
| Sau96I | GGNCC | 3 cut(s) | 61, 1275, 1410 |
| SchI | GAGTC | 4 cut(s) | 81, 298, 604, 929 |
| ScrFI | CCNGG | 3 cut(s) | 59, 201, 1077 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SfaNI | GCATC | 2 cut(s) | 1268, 1360 |
| SfcI | CTRYAG | 2 cut(s) | 926, 1320 |
| Sfr303I | CCGCGG | 1 cut(s) | 698 |
| SgrBI | CCGCGG | 1 cut(s) | 698 |
| SinI | GGWCC | 1 cut(s) | 61 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 41, 801 |
| Sse9I | AATT | 9 cut(s) | 49, 649, 724, 777, 909, 979, 1086, 1104, 1438 |
| SsiI | CCGC | 5 cut(s) | 140, 344, 695, 697, 1335 |
| SspMI | CTAG | 2 cut(s) | 1101, 1356 |
| StyD4I | CCNGG | 3 cut(s) | 57, 199, 1075 |
| StyI | CCWWGG | 3 cut(s) | 497, 1199, 1413 |
| TaaI | ACNGT | 1 cut(s) | 98 |
| TaiI | ACGT | 2 cut(s) | 1067, 1330 |
| TaqI | TCGA | 4 cut(s) | 287, 300, 608, 890 |
| TaqII | GACCGA | 1 cut(s) | 78 |
| TasI | AATT | 9 cut(s) | 49, 649, 724, 777, 909, 979, 1086, 1104, 1438 |
| TatI | WGTACW | 3 cut(s) | 713, 783, 1217 |
| TauI | GCSGC | 1 cut(s) | 142 |
| TfiI | GAWTC | 1 cut(s) | 452 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TscAI | CASTG | 4 cut(s) | 373, 1242, 1357, 1401 |
| TseFI | GTSAC | 3 cut(s) | 129, 794, 919 |
| TseI | GCWGC | 8 cut(s) | 72, 472, 569, 925, 1070, 1322, 1400, 1468 |
| Tsp45I | GTSAC | 3 cut(s) | 129, 794, 919 |
| TspDTI | ATGAA | 5 cut(s) | 53, 59, 390, 429, 1308 |
| TspGWI | ACGGA | 1 cut(s) | 119 |
| TspRI | CASTG | 4 cut(s) | 373, 1242, 1357, 1401 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1038 |
| VpaK11BI | GGWCC | 1 cut(s) | 61 |
| XapI | RAATTY | 1 cut(s) | 979 |
| XceI | RCATGY | 1 cut(s) | 1250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 362 |
| XspI | CTAG | 2 cut(s) | 1101, 1356 |