Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 5 - 56 | 2.5e-06 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 372 |
| AccI | GTMKAC | 1 cut(s) | 67 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcuI | CTGAAG | 2 cut(s) | 236, 285 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 421 |
| AgeI | ACCGGT | 1 cut(s) | 62 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 274 |
| AluBI | AGCT | 1 cut(s) | 153 |
| AluI | AGCT | 1 cut(s) | 153 |
| Alw26I | GTCTC | 1 cut(s) | 282 |
| AlwI | GGATC | 1 cut(s) | 366 |
| ApeKI | GCWGC | 1 cut(s) | 153 |
| AsiGI | ACCGGT | 1 cut(s) | 62 |
| BauI | CACGAG | 2 cut(s) | 271, 340 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvCI | CCTCAGC | 1 cut(s) | 170 |
| BbvI | GCAGC | 1 cut(s) | 140 |
| BceAI | ACGGC | 2 cut(s) | 182, 394 |
| BcoDI | GTCTC | 1 cut(s) | 282 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BfuAI | ACCTGC | 1 cut(s) | 372 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 274 |
| BmsI | GCATC | 1 cut(s) | 33 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 170 |
| BsaI | GGTCTC | 1 cut(s) | 282 |
| BsaWI | WCCGGW | 1 cut(s) | 62 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 421 |
| Bse118I | RCCGGY | 1 cut(s) | 62 |
| Bse1I | ACTGG | 4 cut(s) | 53, 75, 93, 231 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 421 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BseNI | ACTGG | 4 cut(s) | 53, 75, 93, 231 |
| BseXI | GCAGC | 1 cut(s) | 140 |
| BshTI | ACCGGT | 1 cut(s) | 62 |
| BsiSI | CCGG | 1 cut(s) | 63 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 421 |
| BsmAI | GTCTC | 1 cut(s) | 282 |
| Bso31I | GGTCTC | 1 cut(s) | 282 |
| Bsp143I | GATC | 1 cut(s) | 358 |
| BspCNI | CTCAG | 1 cut(s) | 162 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspMI | ACCTGC | 1 cut(s) | 372 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspTNI | GGTCTC | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 1 cut(s) | 62 |
| BsrI | ACTGG | 4 cut(s) | 53, 75, 93, 231 |
| BssAI | RCCGGY | 1 cut(s) | 62 |
| BssMI | GATC | 1 cut(s) | 358 |
| BssNAI | GTATAC | 1 cut(s) | 68 |
| BssSI | CACGAG | 2 cut(s) | 271, 340 |
| Bst1107I | GTATAC | 1 cut(s) | 68 |
| Bst2BI | CACGAG | 2 cut(s) | 271, 340 |
| Bst4CI | ACNGT | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 170 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstKTI | GATC | 1 cut(s) | 361 |
| BstMAI | GTCTC | 1 cut(s) | 282 |
| BstMBI | GATC | 1 cut(s) | 358 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 1 cut(s) | 140 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| BstZ17I | GTATAC | 1 cut(s) | 68 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| BtsIMutI | CAGTG | 3 cut(s) | 86, 224, 357 |
| BveI | ACCTGC | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| CciI | TCATGA | 1 cut(s) | 403 |
| Cfr10I | RCCGGY | 1 cut(s) | 62 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CspAI | ACCGGT | 1 cut(s) | 62 |
| CviAII | CATG | 2 cut(s) | 214, 404 |
| CviJI | RGCY | 4 cut(s) | 153, 169, 185, 413 |
| CviKI_1 | RGCY | 4 cut(s) | 153, 169, 185, 413 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 1 cut(s) | 170 |
| DpnI | GATC | 1 cut(s) | 360 |
| DpnII | GATC | 1 cut(s) | 358 |
| DriI | GACNNNNNGTC | 1 cut(s) | 274 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 274 |
| Eco31I | GGTCTC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 2 cut(s) | 236, 285 |
| EcoT22I | ATGCAT | 1 cut(s) | 26 |
| FaeI | CATG | 2 cut(s) | 217, 407 |
| FaiI | YATR | 9 cut(s) | 22, 42, 68, 112, 215, 289, 296, 323, 405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 142, 174 |
| FatI | CATG | 2 cut(s) | 213, 403 |
| FblI | GTMKAC | 1 cut(s) | 67 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| FokI | GGATG | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| GluI | GCNGC | 1 cut(s) | 154 |
| HapII | CCGG | 1 cut(s) | 63 |
| Hin1II | CATG | 2 cut(s) | 217, 407 |
| HinfI | GANTC | 2 cut(s) | 34, 269 |
| HpaII | CCGG | 1 cut(s) | 63 |
| Hpy166II | GTNNAC | 2 cut(s) | 68, 107 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy188III | TCNNGA | 3 cut(s) | 28, 263, 404 |
| Hpy8I | GTNNAC | 2 cut(s) | 68, 107 |
| HpyAV | CCTTC | 3 cut(s) | 10, 260, 304 |
| HpyCH4III | ACNGT | 1 cut(s) | 352 |
| HpyCH4IV | ACGT | 1 cut(s) | 316 |
| HpyCH4V | TGCA | 2 cut(s) | 8, 24 |
| HpyF3I | CTNAG | 1 cut(s) | 170 |
| HpySE526I | ACGT | 1 cut(s) | 316 |
| Hsp92II | CATG | 2 cut(s) | 217, 407 |
| Kzo9I | GATC | 1 cut(s) | 358 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| Lsp1109I | GCAGC | 1 cut(s) | 140 |
| LweI | GCATC | 1 cut(s) | 33 |
| MaeII | ACGT | 1 cut(s) | 316 |
| MaeIII | GTNAC | 2 cut(s) | 222, 389 |
| MalI | GATC | 1 cut(s) | 360 |
| MboI | GATC | 1 cut(s) | 358 |
| MboII | GAAGA | 2 cut(s) | 43, 278 |
| MfeI | CAATTG | 1 cut(s) | 419 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MluCI | AATT | 1 cut(s) | 419 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 2 cut(s) | 165, 196 |
| Mph1103I | ATGCAT | 1 cut(s) | 26 |
| MseI | TTAA | 1 cut(s) | 57 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspI | CCGG | 1 cut(s) | 63 |
| MunI | CAATTG | 1 cut(s) | 419 |
| NdeII | GATC | 1 cut(s) | 358 |
| NlaIII | CATG | 2 cut(s) | 217, 407 |
| NmuCI | GTSAC | 2 cut(s) | 222, 389 |
| NsiI | ATGCAT | 1 cut(s) | 26 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 322 |
| PfeI | GAWTC | 1 cut(s) | 34 |
| PinAI | ACCGGT | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 306, 338 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SaqAI | TTAA | 1 cut(s) | 57 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 1 cut(s) | 358 |
| SchI | GAGTC | 1 cut(s) | 263 |
| SetI | ASST | 4 cut(s) | 21, 155, 319, 386 |
| SfaNI | GCATC | 1 cut(s) | 33 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| Sse9I | AATT | 1 cut(s) | 419 |
| SspI | AATATT | 1 cut(s) | 46 |
| TaaI | ACNGT | 1 cut(s) | 352 |
| TaiI | ACGT | 1 cut(s) | 319 |
| TasI | AATT | 1 cut(s) | 419 |
| TatI | WGTACW | 1 cut(s) | 106 |
| TfiI | GAWTC | 1 cut(s) | 34 |
| Tru1I | TTAA | 1 cut(s) | 57 |
| Tru9I | TTAA | 1 cut(s) | 57 |
| TscAI | CASTG | 3 cut(s) | 93, 231, 357 |
| TseFI | GTSAC | 2 cut(s) | 222, 389 |
| TseI | GCWGC | 1 cut(s) | 153 |
| Tsp45I | GTSAC | 2 cut(s) | 222, 389 |
| TspDTI | ATGAA | 1 cut(s) | 392 |
| TspRI | CASTG | 3 cut(s) | 93, 231, 357 |
| XmiI | GTMKAC | 1 cut(s) | 67 |
| Zsp2I | ATGCAT | 1 cut(s) | 26 |