Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 102 |
| AclWI | GGATC | 2 cut(s) | 353, 366 |
| AcsI | RAATTY | 2 cut(s) | 522, 582 |
| AfaI | GTAC | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 227, 410 |
| AgsI | TTSAA | 6 cut(s) | 133, 250, 286, 323, 388, 538 |
| AhlI | ACTAGT | 2 cut(s) | 106, 166 |
| AluBI | AGCT | 4 cut(s) | 140, 242, 298, 439 |
| AluI | AGCT | 4 cut(s) | 140, 242, 298, 439 |
| Alw26I | GTCTC | 2 cut(s) | 157, 491 |
| AlwI | GGATC | 2 cut(s) | 353, 366 |
| ApoI | RAATTY | 2 cut(s) | 522, 582 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 32 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 2 cut(s) | 44, 53 |
| AvaII | GGWCC | 1 cut(s) | 199 |
| AxyI | CCTNAGG | 1 cut(s) | 90 |
| BamHI | GGATCC | 1 cut(s) | 358 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| BccI | CCATC | 1 cut(s) | 7 |
| BclI | TGATCA | 1 cut(s) | 34 |
| BcoDI | GTCTC | 2 cut(s) | 157, 491 |
| BcuI | ACTAGT | 2 cut(s) | 106, 166 |
| BfaI | CTAG | 2 cut(s) | 107, 167 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BmcAI | AGTACT | 1 cut(s) | 215 |
| Bme18I | GGWCC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 2 cut(s) | 200, 360 |
| BmsI | GCATC | 1 cut(s) | 93 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BsaAI | YACGTR | 1 cut(s) | 270 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 458, 488 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 227, 410 |
| Bse1I | ACTGG | 1 cut(s) | 150 |
| Bse21I | CCTNAGG | 1 cut(s) | 90 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 1 cut(s) | 84 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 227, 410 |
| BseMII | CTCAG | 2 cut(s) | 408, 492 |
| BseNI | ACTGG | 1 cut(s) | 150 |
| BseRI | GAGGAG | 2 cut(s) | 59, 558 |
| BseYI | CCCAGC | 1 cut(s) | 60 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 227, 410 |
| BsmAI | GTCTC | 2 cut(s) | 157, 491 |
| Bsp143I | GATC | 3 cut(s) | 34, 358, 550 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| BspACI | CCGC | 1 cut(s) | 102 |
| BspCNI | CTCAG | 2 cut(s) | 409, 493 |
| BspLI | GGNNCC | 2 cut(s) | 200, 360 |
| BspPI | GGATC | 2 cut(s) | 353, 366 |
| BsrI | ACTGG | 1 cut(s) | 150 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 3 cut(s) | 34, 358, 550 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| BstBAI | YACGTR | 1 cut(s) | 270 |
| BstC8I | GCNNGC | 1 cut(s) | 240 |
| BstDEI | CTNAG | 4 cut(s) | 90, 150, 417, 501 |
| BstF5I | GGATG | 1 cut(s) | 84 |
| BstKTI | GATC | 3 cut(s) | 37, 361, 553 |
| BstMAI | GTCTC | 2 cut(s) | 157, 491 |
| BstMBI | GATC | 3 cut(s) | 34, 358, 550 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 146 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu36I | CCTNAGG | 1 cut(s) | 90 |
| BtsCI | GGATG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 1 cut(s) | 414 |
| Cac8I | GCNNGC | 1 cut(s) | 240 |
| Cfr13I | GGNCC | 1 cut(s) | 199 |
| Csp6I | GTAC | 1 cut(s) | 214 |
| CviAII | CATG | 1 cut(s) | 235 |
| CviJI | RGCY | 7 cut(s) | 140, 149, 178, 209, 242, 298, 439 |
| CviKI_1 | RGCY | 7 cut(s) | 140, 149, 178, 209, 242, 298, 439 |
| CviQI | GTAC | 1 cut(s) | 214 |
| DdeI | CTNAG | 4 cut(s) | 90, 150, 417, 501 |
| DpnI | GATC | 3 cut(s) | 36, 360, 552 |
| DpnII | GATC | 3 cut(s) | 34, 358, 550 |
| EciI | GGCGGA | 1 cut(s) | 117 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco47I | GGWCC | 1 cut(s) | 199 |
| Eco81I | CCTNAGG | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaeI | CATG | 1 cut(s) | 238 |
| FaiI | YATR | 9 cut(s) | 6, 122, 236, 352, 374, 379, 443, 513, 562 |
| FatI | CATG | 1 cut(s) | 234 |
| FbaI | TGATCA | 1 cut(s) | 34 |
| FokI | GGATG | 1 cut(s) | 71 |
| FspBI | CTAG | 2 cut(s) | 107, 167 |
| GsaI | CCCAGC | 1 cut(s) | 64 |
| Hin1II | CATG | 1 cut(s) | 238 |
| HinfI | GANTC | 2 cut(s) | 182, 367 |
| HphI | GGTGA | 2 cut(s) | 44, 53 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| HpyAV | CCTTC | 4 cut(s) | 92, 247, 349, 404 |
| HpyCH4IV | ACGT | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 84, 194, 306 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 146 |
| HpyF3I | CTNAG | 4 cut(s) | 90, 150, 417, 501 |
| HpySE526I | ACGT | 1 cut(s) | 269 |
| Hsp92II | CATG | 1 cut(s) | 238 |
| Ksp22I | TGATCA | 1 cut(s) | 34 |
| Kzo9I | GATC | 3 cut(s) | 34, 358, 550 |
| LmnI | GCTCC | 1 cut(s) | 545 |
| LpnPI | CCDG | 6 cut(s) | 46, 131, 140, 192, 228, 234 |
| LweI | GCATC | 1 cut(s) | 93 |
| MaeI | CTAG | 2 cut(s) | 107, 167 |
| MaeII | ACGT | 1 cut(s) | 269 |
| MalI | GATC | 3 cut(s) | 36, 360, 552 |
| MboI | GATC | 3 cut(s) | 34, 358, 550 |
| MboII | GAAGA | 4 cut(s) | 107, 252, 262, 461 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MluCI | AATT | 4 cut(s) | 189, 508, 522, 582 |
| MmeI | TCCRAC | 1 cut(s) | 140 |
| MnlI | CCTC | 5 cut(s) | 37, 42, 412, 496, 536 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 128 |
| MseI | TTAA | 4 cut(s) | 204, 314, 507, 586 |
| MslI | CAYNNNNRTG | 2 cut(s) | 268, 349 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 146 |
| NdeII | GATC | 3 cut(s) | 34, 358, 550 |
| NlaIII | CATG | 1 cut(s) | 238 |
| NlaIV | GGNNCC | 2 cut(s) | 200, 360 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PdmI | GAANNNNTTC | 1 cut(s) | 128 |
| PfeI | GAWTC | 2 cut(s) | 182, 367 |
| Ppu21I | YACGTR | 1 cut(s) | 270 |
| PpuMI | RGGWCCY | 1 cut(s) | 199 |
| Psp5II | RGGWCCY | 1 cut(s) | 199 |
| PspFI | CCCAGC | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 2 cut(s) | 200, 360 |
| PspPI | GGNCC | 1 cut(s) | 199 |
| PspPPI | RGGWCCY | 1 cut(s) | 199 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RsaI | GTAC | 1 cut(s) | 215 |
| RsaNI | GTAC | 1 cut(s) | 214 |
| RseI | CAYNNNNRTG | 2 cut(s) | 268, 349 |
| SaqAI | TTAA | 4 cut(s) | 204, 314, 507, 586 |
| Sau3AI | GATC | 3 cut(s) | 34, 358, 550 |
| Sau96I | GGNCC | 1 cut(s) | 199 |
| ScaI | AGTACT | 1 cut(s) | 215 |
| SetI | ASST | 8 cut(s) | 43, 142, 244, 272, 292, 300, 441, 507 |
| SfaNI | GCATC | 1 cut(s) | 93 |
| SinI | GGWCC | 1 cut(s) | 199 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 268, 349 |
| SpeI | ACTAGT | 2 cut(s) | 106, 166 |
| Sse9I | AATT | 4 cut(s) | 189, 508, 522, 582 |
| SsiI | CCGC | 1 cut(s) | 102 |
| SspMI | CTAG | 2 cut(s) | 107, 167 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaiI | ACGT | 1 cut(s) | 272 |
| TasI | AATT | 4 cut(s) | 189, 508, 522, 582 |
| TatI | WGTACW | 1 cut(s) | 213 |
| TfiI | GAWTC | 2 cut(s) | 182, 367 |
| Tru1I | TTAA | 4 cut(s) | 204, 314, 507, 586 |
| Tru9I | TTAA | 4 cut(s) | 204, 314, 507, 586 |
| TscAI | CASTG | 1 cut(s) | 421 |
| TspDTI | ATGAA | 4 cut(s) | 137, 223, 252, 462 |
| TspGWI | ACGGA | 2 cut(s) | 348, 509 |
| TspRI | CASTG | 1 cut(s) | 421 |
| VpaK11BI | GGWCC | 1 cut(s) | 199 |
| XapI | RAATTY | 2 cut(s) | 522, 582 |
| XmnI | GAANNNNTTC | 1 cut(s) | 128 |
| XspI | CTAG | 2 cut(s) | 107, 167 |
| ZrmI | AGTACT | 1 cut(s) | 215 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |