ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 689 - 751 | 8.4e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 648, 2133 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 110, 293, 2171 |
| Acc36I | ACCTGC | 1 cut(s) | 1181 |
| AccBSI | CCGCTC | 1 cut(s) | 2262 |
| AccII | CGCG | 2 cut(s) | 108, 121 |
| AciI | CCGC | 5 cut(s) | 106, 121, 505, 1719, 2260 |
| AclI | AACGTT | 1 cut(s) | 1587 |
| AcsI | RAATTY | 4 cut(s) | 1141, 1335, 1703, 2154 |
| AdeI | CACNNNGTG | 1 cut(s) | 1921 |
| AfaI | GTAC | 6 cut(s) | 189, 764, 1011, 1318, 1500, 2337 |
| AfeI | AGCGCT | 2 cut(s) | 375, 2348 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1170, 1375, 1961 |
| AflII | CTTAAG | 1 cut(s) | 1970 |
| AgeI | ACCGGT | 1 cut(s) | 243 |
| AjnI | CCWGG | 4 cut(s) | 1163, 1349, 1492, 2145 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1324, 1356 |
| Alw21I | GWGCWC | 3 cut(s) | 721, 751, 1300 |
| Alw26I | GTCTC | 3 cut(s) | 1021, 2031, 2078 |
| Alw44I | GTGCAC | 2 cut(s) | 747, 1296 |
| Aor51HI | AGCGCT | 2 cut(s) | 375, 2348 |
| AoxI | GGCC | 1 cut(s) | 672 |
| ApaLI | GTGCAC | 2 cut(s) | 747, 1296 |
| ApeKI | GCWGC | 7 cut(s) | 91, 157, 512, 1768, 2249, 2314, 2323 |
| ApoI | RAATTY | 4 cut(s) | 1141, 1335, 1703, 2154 |
| AsiGI | ACCGGT | 1 cut(s) | 243 |
| AspA2I | CCTAGG | 1 cut(s) | 22 |
| AspLEI | GCGC | 3 cut(s) | 110, 376, 2349 |
| AspS9I | GGNCC | 5 cut(s) | 59, 103, 672, 782, 2206 |
| AsuC2I | CCSGG | 1 cut(s) | 780 |
| AsuHPI | GGTGA | 7 cut(s) | 233, 491, 494, 610, 768, 1564, 1886 |
| AvaII | GGWCC | 4 cut(s) | 59, 103, 782, 2206 |
| AvrII | CCTAGG | 1 cut(s) | 22 |
| BaeGI | GKGCMC | 2 cut(s) | 751, 1300 |
| BauI | CACGAG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 2 cut(s) | 317, 597 |
| Bbv12I | GWGCWC | 3 cut(s) | 721, 751, 1300 |
| BbvCI | CCTCAGC | 1 cut(s) | 95 |
| BbvI | GCAGC | 7 cut(s) | 103, 169, 499, 1755, 2261, 2301, 2335 |
| BccI | CCATC | 5 cut(s) | 246, 782, 1979, 2120, 2150 |
| BceAI | ACGGC | 4 cut(s) | 95, 202, 1661, 1933 |
| BciT130I | CCWGG | 4 cut(s) | 1165, 1351, 1494, 2147 |
| BciVI | GTATCC | 1 cut(s) | 817 |
| BclI | TGATCA | 1 cut(s) | 706 |
| BcnI | CCSGG | 1 cut(s) | 780 |
| BcoDI | GTCTC | 3 cut(s) | 1021, 2031, 2078 |
| BfaI | CTAG | 5 cut(s) | 23, 1038, 1082, 1388, 1929 |
| BfmI | CTRYAG | 2 cut(s) | 1507, 2273 |
| BfoI | RGCGCY | 2 cut(s) | 377, 2350 |
| BfrI | CTTAAG | 1 cut(s) | 1970 |
| BfuAI | ACCTGC | 1 cut(s) | 1181 |
| BfuI | GTATCC | 1 cut(s) | 817 |
| BisI | GCNGC | 7 cut(s) | 92, 158, 513, 1769, 2250, 2315, 2324 |
| BlnI | CCTAGG | 1 cut(s) | 22 |
| BlpI | GCTNAGC | 1 cut(s) | 1835 |
| BlsI | GCNGC | 7 cut(s) | 93, 159, 514, 1770, 2251, 2316, 2325 |
| Bme1390I | CCNGG | 5 cut(s) | 780, 1165, 1351, 1494, 2147 |
| Bme18I | GGWCC | 4 cut(s) | 59, 103, 782, 2206 |
| BmgT120I | GGNCC | 5 cut(s) | 59, 103, 672, 782, 2206 |
| BmiI | GGNNCC | 6 cut(s) | 328, 673, 783, 1685, 1911, 1953 |
| BmrFI | CCNGG | 5 cut(s) | 780, 1165, 1351, 1494, 2147 |
| BmsI | GCATC | 5 cut(s) | 169, 368, 783, 2194, 2319 |
| BpiI | GAAGAC | 2 cut(s) | 317, 597 |
| Bpu10I | CCTNAGC | 1 cut(s) | 95 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1835 |
| BpuEI | CTTGAG | 4 cut(s) | 678, 1206, 2028, 2079 |
| BpuMI | CCSGG | 1 cut(s) | 780 |
| BsaAI | YACGTR | 1 cut(s) | 187 |
| BsaJI | CCNNGG | 3 cut(s) | 22, 1371, 2146 |
| BsaWI | WCCGGW | 4 cut(s) | 243, 483, 784, 1612 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1277, 1307, 2002, 2032 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1170, 1375, 1961 |
| Bse118I | RCCGGY | 2 cut(s) | 243, 1771 |
| Bse1I | ACTGG | 2 cut(s) | 496, 572 |
| Bse3DI | GCAATG | 1 cut(s) | 705 |
| BseBI | CCWGG | 4 cut(s) | 1165, 1351, 1494, 2147 |
| BseDI | CCNNGG | 3 cut(s) | 22, 1371, 2146 |
| BseGI | GGATG | 6 cut(s) | 793, 798, 1990, 2073, 2131, 2142 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1170, 1375, 1961 |
| BseMI | GCAATG | 1 cut(s) | 705 |
| BseMII | CTCAG | 2 cut(s) | 86, 192 |
| BseNI | ACTGG | 2 cut(s) | 496, 572 |
| BseRI | GAGGAG | 3 cut(s) | 293, 1391, 1944 |
| BseSI | GKGCMC | 2 cut(s) | 751, 1300 |
| BseXI | GCAGC | 7 cut(s) | 103, 169, 499, 1755, 2261, 2301, 2335 |
| BsgI | GTGCAG | 2 cut(s) | 100, 2300 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 121 |
| Bsh1285I | CGRYCG | 1 cut(s) | 125 |
| BshFI | GGCC | 1 cut(s) | 674 |
| BshTI | ACCGGT | 1 cut(s) | 243 |
| BsiEI | CGRYCG | 1 cut(s) | 125 |
| BsiHKAI | GWGCWC | 3 cut(s) | 721, 751, 1300 |
| BsiSI | CCGG | 7 cut(s) | 244, 484, 779, 785, 886, 1613, 1772 |
| BslFI | GGGAC | 2 cut(s) | 795, 2163 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1170, 1375, 1961 |
| BsmAI | GTCTC | 3 cut(s) | 1021, 2031, 2078 |
| BsmFI | GGGAC | 2 cut(s) | 795, 2163 |
| BsnI | GGCC | 1 cut(s) | 674 |
| Bsp1286I | GDGCHC | 3 cut(s) | 721, 751, 1300 |
| Bsp1407I | TGTACA | 1 cut(s) | 2335 |
| Bsp143I | GATC | 3 cut(s) | 133, 706, 891 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1835 |
| BspACI | CCGC | 5 cut(s) | 106, 121, 505, 1719, 2260 |
| BspANI | GGCC | 1 cut(s) | 674 |
| BspCNI | CTCAG | 2 cut(s) | 87, 191 |
| BspFNI | CGCG | 2 cut(s) | 108, 121 |
| BspLI | GGNNCC | 6 cut(s) | 328, 673, 783, 1685, 1911, 1953 |
| BspMAI | CTGCAG | 1 cut(s) | 2277 |
| BspMI | ACCTGC | 1 cut(s) | 1181 |
| BspTI | CTTAAG | 1 cut(s) | 1970 |
| BsrBI | CCGCTC | 1 cut(s) | 2262 |
| BsrDI | GCAATG | 1 cut(s) | 705 |
| BsrFI | RCCGGY | 2 cut(s) | 243, 1771 |
| BsrGI | TGTACA | 1 cut(s) | 2335 |
| BsrI | ACTGG | 2 cut(s) | 496, 572 |
| BssAI | RCCGGY | 2 cut(s) | 243, 1771 |
| BssECI | CCNNGG | 3 cut(s) | 22, 1371, 2146 |
| BssMI | GATC | 3 cut(s) | 133, 706, 891 |
| BssSI | CACGAG | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 2 cut(s) | 22, 1371 |
| Bst2BI | CACGAG | 1 cut(s) | 275 |
| Bst2UI | CCWGG | 4 cut(s) | 1165, 1351, 1494, 2147 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 450, 1711, 1857 |
| Bst6I | CTCTTC | 2 cut(s) | 518, 1647 |
| BstAFI | CTTAAG | 1 cut(s) | 1970 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2329 |
| BstAUI | TGTACA | 1 cut(s) | 2335 |
| BstBAI | YACGTR | 1 cut(s) | 187 |
| BstC8I | GCNNGC | 6 cut(s) | 119, 208, 1300, 1428, 1437, 2058 |
| BstDEI | CTNAG | 7 cut(s) | 46, 95, 178, 456, 1045, 1149, 1835 |
| BstEII | GGTNACC | 1 cut(s) | 479 |
| BstF5I | GGATG | 6 cut(s) | 793, 798, 1990, 2073, 2131, 2142 |
| BstFNI | CGCG | 2 cut(s) | 108, 121 |
| BstH2I | RGCGCY | 2 cut(s) | 377, 2350 |
| BstHHI | GCGC | 3 cut(s) | 110, 376, 2349 |
| BstKTI | GATC | 3 cut(s) | 136, 709, 894 |
| BstMAI | GTCTC | 3 cut(s) | 1021, 2031, 2078 |
| BstMBI | GATC | 3 cut(s) | 133, 706, 891 |
| BstMCI | CGRYCG | 1 cut(s) | 125 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 114, 886, 1427, 1432, 1436, 1441, 2320, 2323, 2329 |
| BstNI | CCWGG | 4 cut(s) | 1165, 1351, 1494, 2147 |
| BstPI | GGTNACC | 1 cut(s) | 479 |
| BstSCI | CCNGG | 5 cut(s) | 778, 1163, 1349, 1492, 2145 |
| BstSFI | CTRYAG | 2 cut(s) | 1507, 2273 |
| BstSLI | GKGCMC | 2 cut(s) | 751, 1300 |
| BstUI | CGCG | 2 cut(s) | 108, 121 |
| BstV1I | GCAGC | 7 cut(s) | 103, 169, 499, 1755, 2261, 2301, 2335 |
| BstV2I | GAAGAC | 2 cut(s) | 317, 597 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2233 |
| BsuI | GTATCC | 1 cut(s) | 817 |
| BsuRI | GGCC | 1 cut(s) | 674 |
| BtgZI | GCGATG | 1 cut(s) | 1256 |
| BtsCI | GGATG | 6 cut(s) | 793, 798, 1990, 2073, 2131, 2142 |
| BtsI | GCAGTG | 1 cut(s) | 1536 |
| BtsIMutI | CAGTG | 2 cut(s) | 1536, 1707 |
| BveI | ACCTGC | 1 cut(s) | 1181 |
| Cac8I | GCNNGC | 6 cut(s) | 119, 208, 1300, 1428, 1437, 2058 |
| CfoI | GCGC | 3 cut(s) | 110, 376, 2349 |
| Cfr10I | RCCGGY | 2 cut(s) | 243, 1771 |
| Cfr13I | GGNCC | 5 cut(s) | 59, 103, 672, 782, 2206 |
| Csp6I | GTAC | 6 cut(s) | 188, 763, 1010, 1317, 1499, 2336 |
| CspAI | ACCGGT | 1 cut(s) | 243 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 53, 88 |
| CviAII | CATG | 5 cut(s) | 56, 203, 1070, 1238, 2189 |
| CviQI | GTAC | 6 cut(s) | 188, 763, 1010, 1317, 1499, 2336 |
| DdeI | CTNAG | 7 cut(s) | 46, 95, 178, 456, 1045, 1149, 1835 |
| DpnI | GATC | 3 cut(s) | 135, 708, 893 |
| DpnII | GATC | 3 cut(s) | 133, 706, 891 |
| DraIII | CACNNNGTG | 1 cut(s) | 1921 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 110, 293, 2171 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 110, 293, 2171 |
| Eam1104I | CTCTTC | 2 cut(s) | 518, 1647 |
| EarI | CTCTTC | 2 cut(s) | 518, 1647 |
| Eco130I | CCWWGG | 2 cut(s) | 22, 1371 |
| Eco32I | GATATC | 1 cut(s) | 1201 |
| Eco47I | GGWCC | 4 cut(s) | 59, 103, 782, 2206 |
| Eco47III | AGCGCT | 2 cut(s) | 375, 2348 |
| Eco91I | GGTNACC | 1 cut(s) | 479 |
| EcoO65I | GGTNACC | 1 cut(s) | 479 |
| EcoRII | CCWGG | 4 cut(s) | 1163, 1349, 1492, 2145 |
| EcoRV | GATATC | 1 cut(s) | 1201 |
| EcoT14I | CCWWGG | 2 cut(s) | 22, 1371 |
| ErhI | CCWWGG | 2 cut(s) | 22, 1371 |
| FaeI | CATG | 5 cut(s) | 59, 206, 1073, 1241, 2192 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1187, 1219, 2303, 2335 |
| FaqI | GGGAC | 2 cut(s) | 795, 2163 |
| FatI | CATG | 5 cut(s) | 55, 202, 1069, 1237, 2188 |
| FbaI | TGATCA | 1 cut(s) | 706 |
| Fnu4HI | GCNGC | 7 cut(s) | 92, 158, 513, 1769, 2250, 2315, 2324 |
| FokI | GGATG | 6 cut(s) | 800, 805, 1997, 2060, 2129, 2138 |
| Fsp4HI | GCNGC | 7 cut(s) | 92, 158, 513, 1769, 2250, 2315, 2324 |
| FspBI | CTAG | 5 cut(s) | 23, 1038, 1082, 1388, 1929 |
| GlaI | GCGC | 3 cut(s) | 109, 375, 2348 |
| GluI | GCNGC | 7 cut(s) | 92, 158, 513, 1769, 2250, 2315, 2324 |
| HaeII | RGCGCY | 2 cut(s) | 377, 2350 |
| HaeIII | GGCC | 1 cut(s) | 674 |
| HapII | CCGG | 7 cut(s) | 244, 484, 779, 785, 886, 1613, 1772 |
| HhaI | GCGC | 3 cut(s) | 110, 376, 2349 |
| Hin1II | CATG | 5 cut(s) | 59, 206, 1073, 1241, 2192 |
| Hin6I | GCGC | 3 cut(s) | 108, 374, 2347 |
| HinP1I | GCGC | 3 cut(s) | 108, 374, 2347 |
| HincII | GTYRAC | 2 cut(s) | 973, 1260 |
| HindII | GTYRAC | 2 cut(s) | 973, 1260 |
| HindIII | AAGCTT | 3 cut(s) | 859, 1356, 1437 |
| HinfI | GANTC | 9 cut(s) | 176, 434, 1064, 1481, 1597, 2039, 2070, 2090, 2172 |
| HpaII | CCGG | 7 cut(s) | 244, 484, 779, 785, 886, 1613, 1772 |
| HphI | GGTGA | 7 cut(s) | 233, 491, 494, 610, 768, 1564, 1886 |
| Hpy166II | GTNNAC | 6 cut(s) | 749, 973, 1063, 1260, 1298, 1476 |
| Hpy188I | TCNGA | 5 cut(s) | 85, 181, 637, 1408, 1750 |
| Hpy188III | TCNNGA | 3 cut(s) | 1582, 1601, 1656 |
| Hpy8I | GTNNAC | 6 cut(s) | 749, 973, 1063, 1260, 1298, 1476 |
| Hpy99I | CGWCG | 1 cut(s) | 450 |
| HpyAV | CCTTC | 7 cut(s) | 409, 578, 1147, 1900, 1942, 2211, 2309 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 450, 1711, 1857 |
| HpyCH4IV | ACGT | 5 cut(s) | 71, 186, 464, 665, 1587 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 114, 886, 1427, 1432, 1436, 1441, 2320, 2323, 2329 |
| HpyF3I | CTNAG | 7 cut(s) | 46, 95, 178, 456, 1045, 1149, 1835 |
| HpySE526I | ACGT | 5 cut(s) | 71, 186, 464, 665, 1587 |
| Hsp92II | CATG | 5 cut(s) | 59, 206, 1073, 1241, 2192 |
| HspAI | GCGC | 3 cut(s) | 108, 374, 2347 |
| Ksp22I | TGATCA | 1 cut(s) | 706 |
| Kzo9I | GATC | 3 cut(s) | 133, 706, 891 |
| LmnI | GCTCC | 7 cut(s) | 332, 724, 1187, 1285, 1683, 1957, 2182 |
| Lsp1109I | GCAGC | 7 cut(s) | 103, 169, 499, 1755, 2261, 2301, 2335 |
| LweI | GCATC | 5 cut(s) | 169, 368, 783, 2194, 2319 |
| MaeI | CTAG | 5 cut(s) | 23, 1038, 1082, 1388, 1929 |
| MaeII | ACGT | 5 cut(s) | 71, 186, 464, 665, 1587 |
| MaeIII | GTNAC | 7 cut(s) | 173, 284, 423, 460, 479, 1156, 1556 |
| MalI | GATC | 3 cut(s) | 135, 708, 893 |
| MbiI | CCGCTC | 1 cut(s) | 2262 |
| MboI | GATC | 3 cut(s) | 133, 706, 891 |
| MhlI | GDGCHC | 3 cut(s) | 721, 751, 1300 |
| MlyI | GAGTC | 4 cut(s) | 170, 1058, 2033, 2181 |
| MmeI | TCCRAC | 2 cut(s) | 21, 81 |
| MseI | TTAA | 9 cut(s) | 539, 939, 1134, 1181, 1205, 1467, 1811, 1971, 1977 |
| MspA1I | CMGCKG | 3 cut(s) | 94, 1463, 2326 |
| MspCI | CTTAAG | 1 cut(s) | 1970 |
| MspI | CCGG | 7 cut(s) | 244, 484, 779, 785, 886, 1613, 1772 |
| MspR9I | CCNGG | 5 cut(s) | 780, 1165, 1351, 1494, 2147 |
| MvaI | CCWGG | 4 cut(s) | 1165, 1351, 1494, 2147 |
| MvnI | CGCG | 2 cut(s) | 108, 121 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 114, 886, 1427, 1432, 1436, 1441, 2320, 2323, 2329 |
| NciI | CCSGG | 1 cut(s) | 780 |
| NdeII | GATC | 3 cut(s) | 133, 706, 891 |
| NlaIII | CATG | 5 cut(s) | 59, 206, 1073, 1241, 2192 |
| NlaIV | GGNNCC | 6 cut(s) | 328, 673, 783, 1685, 1911, 1953 |
| NmuCI | GTSAC | 4 cut(s) | 173, 284, 479, 1556 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 294 |
| PfeI | GAWTC | 5 cut(s) | 434, 1481, 1597, 2070, 2090 |
| PinAI | ACCGGT | 1 cut(s) | 243 |
| PkrI | GCNGC | 7 cut(s) | 93, 159, 514, 1770, 2251, 2316, 2325 |
| PleI | GAGTC | 4 cut(s) | 170, 1058, 2033, 2180 |
| PpsI | GAGTC | 4 cut(s) | 170, 1058, 2033, 2180 |
| Ppu21I | YACGTR | 1 cut(s) | 187 |
| PsiI | TTATAA | 2 cut(s) | 648, 2133 |
| Psp1406I | AACGTT | 1 cut(s) | 1587 |
| Psp6I | CCWGG | 4 cut(s) | 1163, 1349, 1492, 2145 |
| PspEI | GGTNACC | 1 cut(s) | 479 |
| PspGI | CCWGG | 4 cut(s) | 1163, 1349, 1492, 2145 |
| PspN4I | GGNNCC | 6 cut(s) | 328, 673, 783, 1685, 1911, 1953 |
| PspPI | GGNCC | 5 cut(s) | 59, 103, 672, 782, 2206 |
| PstI | CTGCAG | 1 cut(s) | 2277 |
| PvuII | CAGCTG | 3 cut(s) | 94, 1463, 2326 |
| RsaI | GTAC | 6 cut(s) | 189, 764, 1011, 1318, 1500, 2337 |
| RsaNI | GTAC | 6 cut(s) | 188, 763, 1010, 1317, 1499, 2336 |
| SaqAI | TTAA | 9 cut(s) | 539, 939, 1134, 1181, 1205, 1467, 1811, 1971, 1977 |
| SatI | GCNGC | 7 cut(s) | 92, 158, 513, 1769, 2250, 2315, 2324 |
| Sau3AI | GATC | 3 cut(s) | 133, 706, 891 |
| Sau96I | GGNCC | 5 cut(s) | 59, 103, 672, 782, 2206 |
| SchI | GAGTC | 4 cut(s) | 170, 1058, 2033, 2181 |
| ScrFI | CCNGG | 5 cut(s) | 780, 1165, 1351, 1494, 2147 |
| SduI | GDGCHC | 3 cut(s) | 721, 751, 1300 |
| SfaNI | GCATC | 5 cut(s) | 169, 368, 783, 2194, 2319 |
| SfcI | CTRYAG | 2 cut(s) | 1507, 2273 |
| SinI | GGWCC | 4 cut(s) | 59, 103, 782, 2206 |
| SmlI | CTYRAG | 5 cut(s) | 693, 1221, 1970, 2043, 2094 |
| SmoI | CTYRAG | 5 cut(s) | 693, 1221, 1970, 2043, 2094 |
| SsiI | CCGC | 5 cut(s) | 106, 121, 505, 1719, 2260 |
| SspMI | CTAG | 5 cut(s) | 23, 1038, 1082, 1388, 1929 |
| StyD4I | CCNGG | 5 cut(s) | 778, 1163, 1349, 1492, 2145 |
| StyI | CCWWGG | 2 cut(s) | 22, 1371 |
| TaaI | ACNGT | 4 cut(s) | 214, 450, 1711, 1857 |
| TaiI | ACGT | 5 cut(s) | 74, 189, 467, 668, 1590 |
| TaqI | TCGA | 2 cut(s) | 297, 642 |
| TaqII | GACCGA | 1 cut(s) | 1686 |
| TatI | WGTACW | 1 cut(s) | 2335 |
| TfiI | GAWTC | 5 cut(s) | 434, 1481, 1597, 2070, 2090 |
| Tru1I | TTAA | 9 cut(s) | 539, 939, 1134, 1181, 1205, 1467, 1811, 1971, 1977 |
| Tru9I | TTAA | 9 cut(s) | 539, 939, 1134, 1181, 1205, 1467, 1811, 1971, 1977 |
| TscAI | CASTG | 2 cut(s) | 1536, 1714 |
| TseFI | GTSAC | 4 cut(s) | 173, 284, 479, 1556 |
| TseI | GCWGC | 7 cut(s) | 91, 157, 512, 1768, 2249, 2314, 2323 |
| Tsp45I | GTSAC | 4 cut(s) | 173, 284, 479, 1556 |
| TspGWI | ACGGA | 1 cut(s) | 1334 |
| TspRI | CASTG | 2 cut(s) | 1536, 1714 |
| Vha464I | CTTAAG | 1 cut(s) | 1970 |
| VneI | GTGCAC | 2 cut(s) | 747, 1296 |
| VpaK11BI | GGWCC | 4 cut(s) | 59, 103, 782, 2206 |
| XapI | RAATTY | 4 cut(s) | 1141, 1335, 1703, 2154 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 69, 2200 |
| XmaJI | CCTAGG | 1 cut(s) | 22 |
| XspI | CTAG | 5 cut(s) | 23, 1038, 1082, 1388, 1929 |