ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1458 |
| Acc36I | ACCTGC | 3 cut(s) | 430, 1424, 1516 |
| Acc65I | GGTACC | 1 cut(s) | 495 |
| AccB1I | GGYRCC | 1 cut(s) | 495 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 141 |
| AccI | GTMKAC | 1 cut(s) | 760 |
| AciI | CCGC | 1 cut(s) | 1391 |
| AclWI | GGATC | 3 cut(s) | 527, 672, 680 |
| AcsI | RAATTY | 7 cut(s) | 103, 171, 190, 1097, 1151, 1294, 1669 |
| AcuI | CTGAAG | 2 cut(s) | 1307, 1380 |
| AfaI | GTAC | 7 cut(s) | 24, 154, 497, 565, 817, 922, 1350 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 141, 515, 637, 775, 862, 1277, 1281, 1470 |
| AflIII | ACRYGT | 2 cut(s) | 341, 1417 |
| AgsI | TTSAA | 6 cut(s) | 20, 422, 807, 929, 1192, 1490 |
| AjiI | CACGTC | 1 cut(s) | 314 |
| AjnI | CCWGG | 3 cut(s) | 568, 636, 811 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 572, 604, 1280, 1312, 1458, 1490 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1166, 1198 |
| AluBI | AGCT | 9 cut(s) | 94, 266, 821, 1089, 1232, 1412, 1442, 1589, 1655 |
| AluI | AGCT | 9 cut(s) | 94, 266, 821, 1089, 1232, 1412, 1442, 1589, 1655 |
| Alw26I | GTCTC | 3 cut(s) | 228, 1040, 1313 |
| AlwI | GGATC | 3 cut(s) | 527, 672, 680 |
| AoxI | GGCC | 4 cut(s) | 220, 324, 634, 1305 |
| ApeKI | GCWGC | 3 cut(s) | 401, 1232, 1442 |
| ApoI | RAATTY | 7 cut(s) | 103, 171, 190, 1097, 1151, 1294, 1669 |
| Asp718I | GGTACC | 1 cut(s) | 495 |
| AspA2I | CCTAGG | 1 cut(s) | 631 |
| AspLEI | GCGC | 1 cut(s) | 1459 |
| AspS9I | GGNCC | 4 cut(s) | 43, 325, 766, 1305 |
| AsuC2I | CCSGG | 1 cut(s) | 516 |
| AsuHPI | GGTGA | 2 cut(s) | 366, 1303 |
| AvaII | GGWCC | 2 cut(s) | 43, 766 |
| AvrII | CCTAGG | 1 cut(s) | 631 |
| AxyI | CCTNAGG | 1 cut(s) | 207 |
| BanI | GGYRCC | 1 cut(s) | 495 |
| BauI | CACGAG | 2 cut(s) | 490, 995 |
| BbvCI | CCTCAGC | 1 cut(s) | 621 |
| BbvI | GCAGC | 3 cut(s) | 388, 1219, 1429 |
| BccI | CCATC | 4 cut(s) | 270, 429, 777, 1295 |
| BciT130I | CCWGG | 3 cut(s) | 570, 638, 813 |
| BcnI | CCSGG | 1 cut(s) | 516 |
| BcoDI | GTCTC | 3 cut(s) | 228, 1040, 1313 |
| BfaI | CTAG | 6 cut(s) | 510, 632, 651, 983, 1674, 1683 |
| BfmI | CTRYAG | 3 cut(s) | 939, 1219, 1443 |
| BfuAI | ACCTGC | 3 cut(s) | 430, 1424, 1516 |
| BglII | AGATCT | 1 cut(s) | 825 |
| BisI | GCNGC | 3 cut(s) | 402, 1233, 1443 |
| BlnI | CCTAGG | 1 cut(s) | 631 |
| BlsI | GCNGC | 3 cut(s) | 403, 1234, 1444 |
| BmcAI | AGTACT | 3 cut(s) | 24, 154, 565 |
| Bme1390I | CCNGG | 4 cut(s) | 516, 570, 638, 813 |
| Bme18I | GGWCC | 2 cut(s) | 43, 766 |
| BmgBI | CACGTC | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 4 cut(s) | 43, 325, 766, 1305 |
| BmiI | GGNNCC | 3 cut(s) | 44, 497, 1306 |
| BmrFI | CCNGG | 4 cut(s) | 516, 570, 638, 813 |
| BmsI | GCATC | 2 cut(s) | 346, 1345 |
| BpmI | CTGGAG | 2 cut(s) | 345, 552 |
| Bpu10I | CCTNAGC | 2 cut(s) | 621, 1029 |
| BpuEI | CTTGAG | 1 cut(s) | 917 |
| BpuMI | CCSGG | 1 cut(s) | 516 |
| BsaBI | GATNNNNATC | 2 cut(s) | 162, 531 |
| BsaI | GGTCTC | 1 cut(s) | 1040 |
| BsaJI | CCNNGG | 6 cut(s) | 223, 515, 542, 631, 1276, 1465 |
| BsaWI | WCCGGW | 1 cut(s) | 763 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 141, 515, 637, 775, 862, 1277, 1281, 1470 |
| Bse118I | RCCGGY | 1 cut(s) | 775 |
| Bse21I | CCTNAGG | 1 cut(s) | 207 |
| Bse3DI | GCAATG | 2 cut(s) | 396, 1060 |
| Bse8I | GATNNNNATC | 2 cut(s) | 162, 531 |
| BseBI | CCWGG | 3 cut(s) | 570, 638, 813 |
| BseDI | CCNNGG | 6 cut(s) | 223, 515, 542, 631, 1276, 1465 |
| BseGI | GGATG | 6 cut(s) | 281, 361, 769, 1180, 1306, 1360 |
| BseJI | GATNNNNATC | 2 cut(s) | 162, 531 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 141, 515, 637, 775, 862, 1277, 1281, 1470 |
| BseMI | GCAATG | 2 cut(s) | 396, 1060 |
| BseMII | CTCAG | 3 cut(s) | 612, 1032, 1043 |
| BseRI | GAGGAG | 5 cut(s) | 227, 406, 629, 1061, 1260 |
| BseXI | GCAGC | 3 cut(s) | 388, 1219, 1429 |
| BsgI | GTGCAG | 1 cut(s) | 1533 |
| BshFI | GGCC | 4 cut(s) | 222, 326, 636, 1307 |
| BshNI | GGYRCC | 1 cut(s) | 495 |
| BsiSI | CCGG | 3 cut(s) | 515, 764, 776 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 141, 515, 637, 775, 862, 1277, 1281, 1470 |
| BsmAI | GTCTC | 3 cut(s) | 228, 1040, 1313 |
| BsmI | GAATGC | 2 cut(s) | 907, 1519 |
| BsnI | GGCC | 4 cut(s) | 222, 326, 636, 1307 |
| Bso31I | GGTCTC | 1 cut(s) | 1040 |
| Bsp143I | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| BspACI | CCGC | 1 cut(s) | 1391 |
| BspANI | GGCC | 4 cut(s) | 222, 326, 636, 1307 |
| BspCNI | CTCAG | 3 cut(s) | 613, 1031, 1042 |
| BspLI | GGNNCC | 3 cut(s) | 44, 497, 1306 |
| BspMAI | CTGCAG | 1 cut(s) | 1447 |
| BspMI | ACCTGC | 3 cut(s) | 430, 1424, 1516 |
| BspPI | GGATC | 3 cut(s) | 527, 672, 680 |
| BspT107I | GGYRCC | 1 cut(s) | 495 |
| BspTNI | GGTCTC | 1 cut(s) | 1040 |
| BsrDI | GCAATG | 2 cut(s) | 396, 1060 |
| BsrFI | RCCGGY | 1 cut(s) | 775 |
| BssAI | RCCGGY | 1 cut(s) | 775 |
| BssECI | CCNNGG | 6 cut(s) | 223, 515, 542, 631, 1276, 1465 |
| BssMI | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| BssNAI | GTATAC | 1 cut(s) | 761 |
| BssSI | CACGAG | 2 cut(s) | 490, 995 |
| BssT1I | CCWWGG | 4 cut(s) | 223, 631, 1276, 1465 |
| Bst1107I | GTATAC | 1 cut(s) | 761 |
| Bst2BI | CACGAG | 2 cut(s) | 490, 995 |
| Bst2UI | CCWGG | 3 cut(s) | 570, 638, 813 |
| Bst4CI | ACNGT | 5 cut(s) | 865, 925, 979, 1223, 1625 |
| Bst6I | CTCTTC | 1 cut(s) | 704 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 286 |
| BstC8I | GCNNGC | 1 cut(s) | 801 |
| BstDEI | CTNAG | 8 cut(s) | 207, 621, 644, 822, 972, 1018, 1029, 1656 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1275 |
| BstF5I | GGATG | 6 cut(s) | 281, 361, 769, 1180, 1306, 1360 |
| BstHHI | GCGC | 1 cut(s) | 1459 |
| BstKTI | GATC | 7 cut(s) | 367, 478, 535, 599, 667, 688, 828 |
| BstMAI | GTCTC | 3 cut(s) | 228, 1040, 1313 |
| BstMBI | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 263, 286, 796, 1439, 1661 |
| BstNI | CCWGG | 3 cut(s) | 570, 638, 813 |
| BstNSI | RCATGY | 4 cut(s) | 245, 284, 345, 1421 |
| BstSCI | CCNGG | 4 cut(s) | 514, 568, 636, 811 |
| BstSFI | CTRYAG | 3 cut(s) | 939, 1219, 1443 |
| BstV1I | GCAGC | 3 cut(s) | 388, 1219, 1429 |
| BstX2I | RGATCY | 2 cut(s) | 685, 825 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 576, 1639 |
| BstYI | RGATCY | 2 cut(s) | 685, 825 |
| BstZ17I | GTATAC | 1 cut(s) | 761 |
| Bsu36I | CCTNAGG | 1 cut(s) | 207 |
| BsuRI | GGCC | 4 cut(s) | 222, 326, 636, 1307 |
| BtrI | CACGTC | 1 cut(s) | 314 |
| BtsCI | GGATG | 6 cut(s) | 281, 361, 769, 1180, 1306, 1360 |
| BtsI | GCAGTG | 1 cut(s) | 1452 |
| BtsIMutI | CAGTG | 2 cut(s) | 1026, 1452 |
| BveI | ACCTGC | 3 cut(s) | 430, 1424, 1516 |
| Cac8I | GCNNGC | 1 cut(s) | 801 |
| CfoI | GCGC | 1 cut(s) | 1459 |
| Cfr10I | RCCGGY | 1 cut(s) | 775 |
| Cfr13I | GGNCC | 4 cut(s) | 43, 325, 766, 1305 |
| Csp6I | GTAC | 7 cut(s) | 23, 153, 496, 564, 816, 921, 1349 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 410, 445 |
| CviQI | GTAC | 7 cut(s) | 23, 153, 496, 564, 816, 921, 1349 |
| DdeI | CTNAG | 8 cut(s) | 207, 621, 644, 822, 972, 1018, 1029, 1656 |
| DpnI | GATC | 7 cut(s) | 366, 477, 534, 598, 666, 687, 827 |
| DpnII | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| DraI | TTTAAA | 1 cut(s) | 1668 |
| Eam1104I | CTCTTC | 1 cut(s) | 704 |
| EarI | CTCTTC | 1 cut(s) | 704 |
| Eco130I | CCWWGG | 4 cut(s) | 223, 631, 1276, 1465 |
| Eco147I | AGGCCT | 2 cut(s) | 222, 636 |
| Eco31I | GGTCTC | 1 cut(s) | 1040 |
| Eco47I | GGWCC | 2 cut(s) | 43, 766 |
| Eco57I | CTGAAG | 2 cut(s) | 1307, 1380 |
| Eco81I | CCTNAGG | 1 cut(s) | 207 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1275 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1305 |
| EcoRII | CCWGG | 3 cut(s) | 568, 636, 811 |
| EcoT14I | CCWWGG | 4 cut(s) | 223, 631, 1276, 1465 |
| EcoT22I | ATGCAT | 1 cut(s) | 1086 |
| ErhI | CCWWGG | 4 cut(s) | 223, 631, 1276, 1465 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 998, 1030, 1049, 1081 |
| FblI | GTMKAC | 1 cut(s) | 760 |
| Fnu4HI | GCNGC | 3 cut(s) | 402, 1233, 1443 |
| FokI | GGATG | 6 cut(s) | 288, 368, 756, 1187, 1313, 1367 |
| Fsp4HI | GCNGC | 3 cut(s) | 402, 1233, 1443 |
| FspBI | CTAG | 6 cut(s) | 510, 632, 651, 983, 1674, 1683 |
| FspI | TGCGCA | 1 cut(s) | 1458 |
| GlaI | GCGC | 1 cut(s) | 1458 |
| GluI | GCNGC | 3 cut(s) | 402, 1233, 1443 |
| GsuI | CTGGAG | 2 cut(s) | 345, 552 |
| HaeIII | GGCC | 4 cut(s) | 222, 326, 636, 1307 |
| HapII | CCGG | 3 cut(s) | 515, 764, 776 |
| HhaI | GCGC | 1 cut(s) | 1459 |
| Hin6I | GCGC | 1 cut(s) | 1457 |
| HinP1I | GCGC | 1 cut(s) | 1457 |
| HincII | GTYRAC | 1 cut(s) | 1002 |
| HindII | GTYRAC | 1 cut(s) | 1002 |
| HinfI | GANTC | 3 cut(s) | 889, 991, 1496 |
| HpaII | CCGG | 3 cut(s) | 515, 764, 776 |
| HphI | GGTGA | 2 cut(s) | 366, 1303 |
| Hpy166II | GTNNAC | 5 cut(s) | 702, 761, 921, 1002, 1396 |
| Hpy188I | TCNGA | 4 cut(s) | 526, 553, 1071, 1242 |
| Hpy188III | TCNNGA | 9 cut(s) | 233, 353, 362, 703, 896, 995, 1164, 1674, 1706 |
| Hpy8I | GTNNAC | 5 cut(s) | 702, 761, 921, 1002, 1396 |
| HpyAV | CCTTC | 8 cut(s) | 26, 387, 832, 866, 1000, 1163, 1282, 1355 |
| HpyCH4III | ACNGT | 5 cut(s) | 865, 925, 979, 1223, 1625 |
| HpyCH4IV | ACGT | 3 cut(s) | 313, 1544, 1607 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 263, 286, 796, 1439, 1661 |
| HpyF3I | CTNAG | 8 cut(s) | 207, 621, 644, 822, 972, 1018, 1029, 1656 |
| HpySE526I | ACGT | 3 cut(s) | 313, 1544, 1607 |
| HspAI | GCGC | 1 cut(s) | 1457 |
| KpnI | GGTACC | 1 cut(s) | 499 |
| Kzo9I | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| LmnI | GCTCC | 2 cut(s) | 364, 393 |
| Lsp1109I | GCAGC | 3 cut(s) | 388, 1219, 1429 |
| LweI | GCATC | 2 cut(s) | 346, 1345 |
| MaeI | CTAG | 6 cut(s) | 510, 632, 651, 983, 1674, 1683 |
| MaeII | ACGT | 3 cut(s) | 313, 1544, 1607 |
| MaeIII | GTNAC | 2 cut(s) | 110, 329 |
| MalI | GATC | 7 cut(s) | 366, 477, 534, 598, 666, 687, 827 |
| MboI | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| MboII | GAAGA | 2 cut(s) | 721, 1099 |
| MfeI | CAATTG | 1 cut(s) | 1428 |
| MflI | RGATCY | 2 cut(s) | 685, 825 |
| MmeI | TCCRAC | 4 cut(s) | 167, 642, 1121, 1354 |
| Mph1103I | ATGCAT | 1 cut(s) | 1086 |
| MseI | TTAA | 3 cut(s) | 249, 1056, 1667 |
| MspA1I | CMGCKG | 1 cut(s) | 1412 |
| MspI | CCGG | 3 cut(s) | 515, 764, 776 |
| MspR9I | CCNGG | 4 cut(s) | 516, 570, 638, 813 |
| MunI | CAATTG | 1 cut(s) | 1428 |
| Mva1269I | GAATGC | 2 cut(s) | 907, 1519 |
| MvaI | CCWGG | 3 cut(s) | 570, 638, 813 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 263, 286, 796, 1439, 1661 |
| NciI | CCSGG | 1 cut(s) | 516 |
| NdeII | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| NlaIV | GGNNCC | 3 cut(s) | 44, 497, 1306 |
| NmuCI | GTSAC | 1 cut(s) | 110 |
| NsbI | TGCGCA | 1 cut(s) | 1458 |
| NsiI | ATGCAT | 1 cut(s) | 1086 |
| NspI | RCATGY | 4 cut(s) | 245, 284, 345, 1421 |
| PceI | AGGCCT | 2 cut(s) | 222, 636 |
| PciI | ACATGT | 2 cut(s) | 341, 1417 |
| PctI | GAATGC | 2 cut(s) | 907, 1519 |
| PfeI | GAWTC | 3 cut(s) | 889, 991, 1496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 141 |
| PfoI | TCCNGGA | 1 cut(s) | 568 |
| PkrI | GCNGC | 3 cut(s) | 403, 1234, 1444 |
| PscI | ACATGT | 2 cut(s) | 341, 1417 |
| Psp6I | CCWGG | 3 cut(s) | 568, 636, 811 |
| PspGI | CCWGG | 3 cut(s) | 568, 636, 811 |
| PspN4I | GGNNCC | 3 cut(s) | 44, 497, 1306 |
| PspPI | GGNCC | 4 cut(s) | 43, 325, 766, 1305 |
| PstI | CTGCAG | 1 cut(s) | 1447 |
| PsuI | RGATCY | 2 cut(s) | 685, 825 |
| PvuII | CAGCTG | 1 cut(s) | 1412 |
| RsaI | GTAC | 7 cut(s) | 24, 154, 497, 565, 817, 922, 1350 |
| RsaNI | GTAC | 7 cut(s) | 23, 153, 496, 564, 816, 921, 1349 |
| SaqAI | TTAA | 3 cut(s) | 249, 1056, 1667 |
| SatI | GCNGC | 3 cut(s) | 402, 1233, 1443 |
| Sau3AI | GATC | 7 cut(s) | 364, 475, 532, 596, 664, 685, 825 |
| Sau96I | GGNCC | 4 cut(s) | 43, 325, 766, 1305 |
| ScaI | AGTACT | 3 cut(s) | 24, 154, 565 |
| ScrFI | CCNGG | 4 cut(s) | 516, 570, 638, 813 |
| SfaNI | GCATC | 2 cut(s) | 346, 1345 |
| SfcI | CTRYAG | 3 cut(s) | 939, 1219, 1443 |
| SinI | GGWCC | 2 cut(s) | 43, 766 |
| SmlI | CTYRAG | 1 cut(s) | 896 |
| SmoI | CTYRAG | 1 cut(s) | 896 |
| SseBI | AGGCCT | 2 cut(s) | 222, 636 |
| SsiI | CCGC | 1 cut(s) | 1391 |
| SspI | AATATT | 1 cut(s) | 1483 |
| SspMI | CTAG | 6 cut(s) | 510, 632, 651, 983, 1674, 1683 |
| StuI | AGGCCT | 2 cut(s) | 222, 636 |
| StyD4I | CCNGG | 4 cut(s) | 514, 568, 636, 811 |
| StyI | CCWWGG | 4 cut(s) | 223, 631, 1276, 1465 |
| TaaI | ACNGT | 5 cut(s) | 865, 925, 979, 1223, 1625 |
| TaiI | ACGT | 3 cut(s) | 316, 1547, 1610 |
| TaqI | TCGA | 2 cut(s) | 232, 989 |
| TatI | WGTACW | 4 cut(s) | 22, 152, 563, 920 |
| TfiI | GAWTC | 3 cut(s) | 889, 991, 1496 |
| Tru1I | TTAA | 3 cut(s) | 249, 1056, 1667 |
| Tru9I | TTAA | 3 cut(s) | 249, 1056, 1667 |
| TscAI | CASTG | 2 cut(s) | 1026, 1452 |
| TseFI | GTSAC | 1 cut(s) | 110 |
| TseI | GCWGC | 3 cut(s) | 401, 1232, 1442 |
| Tsp45I | GTSAC | 1 cut(s) | 110 |
| TspGWI | ACGGA | 1 cut(s) | 1175 |
| TspRI | CASTG | 2 cut(s) | 1026, 1452 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 141 |
| VpaK11BI | GGWCC | 2 cut(s) | 43, 766 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1275 |
| XapI | RAATTY | 7 cut(s) | 103, 171, 190, 1097, 1151, 1294, 1669 |
| XbaI | TCTAGA | 1 cut(s) | 1673 |
| XceI | RCATGY | 4 cut(s) | 245, 284, 345, 1421 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 780 |
| XmaJI | CCTAGG | 1 cut(s) | 631 |
| XmiI | GTMKAC | 1 cut(s) | 760 |
| XspI | CTAG | 6 cut(s) | 510, 632, 651, 983, 1674, 1683 |
| ZrmI | AGTACT | 3 cut(s) | 24, 154, 565 |
| Zsp2I | ATGCAT | 1 cut(s) | 1086 |