Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 82, 520 |
| AccB1I | GGYRCC | 2 cut(s) | 82, 520 |
| AccII | CGCG | 2 cut(s) | 274, 429 |
| AciI | CCGC | 2 cut(s) | 272, 524 |
| AfaI | GTAC | 4 cut(s) | 84, 154, 502, 522 |
| AgeI | ACCGGT | 1 cut(s) | 138 |
| AgsI | TTSAA | 1 cut(s) | 301 |
| AjnI | CCWGG | 1 cut(s) | 102 |
| AluBI | AGCT | 2 cut(s) | 35, 515 |
| AluI | AGCT | 2 cut(s) | 35, 515 |
| Alw26I | GTCTC | 1 cut(s) | 165 |
| AoxI | GGCC | 2 cut(s) | 21, 474 |
| ApeKI | GCWGC | 3 cut(s) | 163, 310, 411 |
| AsiGI | ACCGGT | 1 cut(s) | 138 |
| Asp718I | GGTACC | 2 cut(s) | 82, 520 |
| AspS9I | GGNCC | 2 cut(s) | 22, 141 |
| AvaII | GGWCC | 1 cut(s) | 141 |
| BanI | GGYRCC | 2 cut(s) | 82, 520 |
| BbsI | GAAGAC | 1 cut(s) | 468 |
| BbvI | GCAGC | 3 cut(s) | 150, 297, 423 |
| BciT130I | CCWGG | 1 cut(s) | 104 |
| BcoDI | GTCTC | 1 cut(s) | 165 |
| BfaI | CTAG | 3 cut(s) | 14, 51, 332 |
| BfmI | CTRYAG | 1 cut(s) | 291 |
| BisI | GCNGC | 3 cut(s) | 164, 311, 412 |
| BlsI | GCNGC | 3 cut(s) | 165, 312, 413 |
| Bme1390I | CCNGG | 1 cut(s) | 104 |
| Bme18I | GGWCC | 1 cut(s) | 141 |
| BmgT120I | GGNCC | 2 cut(s) | 22, 141 |
| BmiI | GGNNCC | 2 cut(s) | 84, 522 |
| BmrFI | CCNGG | 1 cut(s) | 104 |
| BmsI | GCATC | 2 cut(s) | 351, 430 |
| BoxI | GACNNNNGTC | 1 cut(s) | 58 |
| BpiI | GAAGAC | 1 cut(s) | 468 |
| BpmI | CTGGAG | 2 cut(s) | 86, 299 |
| BsaI | GGTCTC | 1 cut(s) | 165 |
| BsaWI | WCCGGW | 2 cut(s) | 138, 387 |
| Bse118I | RCCGGY | 1 cut(s) | 138 |
| Bse1I | ACTGG | 2 cut(s) | 311, 316 |
| BseBI | CCWGG | 1 cut(s) | 104 |
| BseGI | GGATG | 1 cut(s) | 421 |
| BseMII | CTCAG | 1 cut(s) | 410 |
| BseNI | ACTGG | 2 cut(s) | 311, 316 |
| BseXI | GCAGC | 3 cut(s) | 150, 297, 423 |
| Bsh1236I | CGCG | 2 cut(s) | 274, 429 |
| BshFI | GGCC | 2 cut(s) | 23, 476 |
| BshNI | GGYRCC | 2 cut(s) | 82, 520 |
| BshTI | ACCGGT | 1 cut(s) | 138 |
| BsiSI | CCGG | 2 cut(s) | 139, 388 |
| BsmAI | GTCTC | 1 cut(s) | 165 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 2 cut(s) | 23, 476 |
| Bso31I | GGTCTC | 1 cut(s) | 165 |
| Bsp143I | GATC | 1 cut(s) | 87 |
| Bsp68I | TCGCGA | 1 cut(s) | 429 |
| BspACI | CCGC | 2 cut(s) | 272, 524 |
| BspANI | GGCC | 2 cut(s) | 23, 476 |
| BspCNI | CTCAG | 1 cut(s) | 409 |
| BspFNI | CGCG | 2 cut(s) | 274, 429 |
| BspLI | GGNNCC | 2 cut(s) | 84, 522 |
| BspT107I | GGYRCC | 2 cut(s) | 82, 520 |
| BspTNI | GGTCTC | 1 cut(s) | 165 |
| BsrFI | RCCGGY | 1 cut(s) | 138 |
| BsrI | ACTGG | 2 cut(s) | 311, 316 |
| BssAI | RCCGGY | 1 cut(s) | 138 |
| BssMI | GATC | 1 cut(s) | 87 |
| Bst2UI | CCWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 2 cut(s) | 57, 531 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstF5I | GGATG | 1 cut(s) | 421 |
| BstFNI | CGCG | 2 cut(s) | 274, 429 |
| BstKTI | GATC | 1 cut(s) | 90 |
| BstMAI | GTCTC | 1 cut(s) | 165 |
| BstMBI | GATC | 1 cut(s) | 87 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 189, 198 |
| BstNI | CCWGG | 1 cut(s) | 104 |
| BstNSI | RCATGY | 2 cut(s) | 183, 221 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 58 |
| BstSCI | CCNGG | 1 cut(s) | 102 |
| BstSFI | CTRYAG | 1 cut(s) | 291 |
| BstUI | CGCG | 2 cut(s) | 274, 429 |
| BstV1I | GCAGC | 3 cut(s) | 150, 297, 423 |
| BstV2I | GAAGAC | 1 cut(s) | 468 |
| BsuRI | GGCC | 2 cut(s) | 23, 476 |
| BtgZI | GCGATG | 1 cut(s) | 444 |
| BtsCI | GGATG | 1 cut(s) | 421 |
| BtuMI | TCGCGA | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 2 cut(s) | 22, 141 |
| Csp6I | GTAC | 4 cut(s) | 83, 153, 501, 521 |
| CspAI | ACCGGT | 1 cut(s) | 138 |
| CviAII | CATG | 3 cut(s) | 117, 180, 218 |
| CviJI | RGCY | 8 cut(s) | 5, 23, 35, 163, 310, 453, 476, 515 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 23, 35, 163, 310, 453, 476, 515 |
| CviQI | GTAC | 4 cut(s) | 83, 153, 501, 521 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 1 cut(s) | 89 |
| DpnII | GATC | 1 cut(s) | 87 |
| Eco31I | GGTCTC | 1 cut(s) | 165 |
| Eco47I | GGWCC | 1 cut(s) | 141 |
| EcoRII | CCWGG | 1 cut(s) | 102 |
| FaeI | CATG | 3 cut(s) | 120, 183, 221 |
| FatI | CATG | 3 cut(s) | 116, 179, 217 |
| FauNDI | CATATG | 3 cut(s) | 188, 238, 368 |
| Fnu4HI | GCNGC | 3 cut(s) | 164, 311, 412 |
| FokI | GGATG | 1 cut(s) | 408 |
| Fsp4HI | GCNGC | 3 cut(s) | 164, 311, 412 |
| FspBI | CTAG | 3 cut(s) | 14, 51, 332 |
| GluI | GCNGC | 3 cut(s) | 164, 311, 412 |
| GsuI | CTGGAG | 2 cut(s) | 86, 299 |
| HaeIII | GGCC | 2 cut(s) | 23, 476 |
| HapII | CCGG | 2 cut(s) | 139, 388 |
| Hin1II | CATG | 3 cut(s) | 120, 183, 221 |
| HindIII | AAGCTT | 1 cut(s) | 513 |
| HinfI | GANTC | 3 cut(s) | 276, 482, 508 |
| HpaII | CCGG | 2 cut(s) | 139, 388 |
| Hpy188I | TCNGA | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 2 cut(s) | 332, 428 |
| HpyAV | CCTTC | 3 cut(s) | 35, 73, 401 |
| HpyCH4III | ACNGT | 2 cut(s) | 57, 531 |
| HpyCH4IV | ACGT | 3 cut(s) | 213, 446, 499 |
| HpyCH4V | TGCA | 4 cut(s) | 192, 217, 234, 350 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 189, 198 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 3 cut(s) | 213, 446, 499 |
| Hsp92II | CATG | 3 cut(s) | 120, 183, 221 |
| KpnI | GGTACC | 2 cut(s) | 86, 524 |
| Kzo9I | GATC | 1 cut(s) | 87 |
| LmnI | GCTCC | 2 cut(s) | 40, 318 |
| Lsp1109I | GCAGC | 3 cut(s) | 150, 297, 423 |
| LweI | GCATC | 2 cut(s) | 351, 430 |
| MaeI | CTAG | 3 cut(s) | 14, 51, 332 |
| MaeII | ACGT | 3 cut(s) | 213, 446, 499 |
| MalI | GATC | 1 cut(s) | 89 |
| MboI | GATC | 1 cut(s) | 87 |
| MboII | GAAGA | 2 cut(s) | 218, 473 |
| MfeI | CAATTG | 1 cut(s) | 229 |
| MluCI | AATT | 2 cut(s) | 66, 229 |
| MlyI | GAGTC | 1 cut(s) | 285 |
| MmeI | TCCRAC | 1 cut(s) | 438 |
| MnlI | CCTC | 2 cut(s) | 249, 435 |
| MseI | TTAA | 2 cut(s) | 149, 440 |
| MspI | CCGG | 2 cut(s) | 139, 388 |
| MspR9I | CCNGG | 1 cut(s) | 104 |
| MunI | CAATTG | 1 cut(s) | 229 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| MvaI | CCWGG | 1 cut(s) | 104 |
| MvnI | CGCG | 2 cut(s) | 274, 429 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 189, 198 |
| NdeI | CATATG | 3 cut(s) | 188, 238, 368 |
| NdeII | GATC | 1 cut(s) | 87 |
| NlaIII | CATG | 3 cut(s) | 120, 183, 221 |
| NlaIV | GGNNCC | 2 cut(s) | 84, 522 |
| NruI | TCGCGA | 1 cut(s) | 429 |
| NspI | RCATGY | 2 cut(s) | 183, 221 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PfeI | GAWTC | 2 cut(s) | 482, 508 |
| PflFI | GACNNNGTC | 1 cut(s) | 467 |
| PinAI | ACCGGT | 1 cut(s) | 138 |
| PkrI | GCNGC | 3 cut(s) | 165, 312, 413 |
| PleI | GAGTC | 1 cut(s) | 284 |
| PpsI | GAGTC | 1 cut(s) | 284 |
| PshAI | GACNNNNGTC | 1 cut(s) | 58 |
| Psp6I | CCWGG | 1 cut(s) | 102 |
| PspGI | CCWGG | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 2 cut(s) | 84, 522 |
| PspPI | GGNCC | 2 cut(s) | 22, 141 |
| PsyI | GACNNNGTC | 1 cut(s) | 467 |
| RruI | TCGCGA | 1 cut(s) | 429 |
| RsaI | GTAC | 4 cut(s) | 84, 154, 502, 522 |
| RsaNI | GTAC | 4 cut(s) | 83, 153, 501, 521 |
| SaqAI | TTAA | 2 cut(s) | 149, 440 |
| SatI | GCNGC | 3 cut(s) | 164, 311, 412 |
| Sau3AI | GATC | 1 cut(s) | 87 |
| Sau96I | GGNCC | 2 cut(s) | 22, 141 |
| SchI | GAGTC | 1 cut(s) | 285 |
| ScrFI | CCNGG | 1 cut(s) | 104 |
| SfaNI | GCATC | 2 cut(s) | 351, 430 |
| SfcI | CTRYAG | 1 cut(s) | 291 |
| SinI | GGWCC | 1 cut(s) | 141 |
| Sse9I | AATT | 2 cut(s) | 66, 229 |
| SsiI | CCGC | 2 cut(s) | 272, 524 |
| SspMI | CTAG | 3 cut(s) | 14, 51, 332 |
| StyD4I | CCNGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 2 cut(s) | 57, 531 |
| TaiI | ACGT | 3 cut(s) | 216, 449, 502 |
| TaqI | TCGA | 1 cut(s) | 485 |
| TasI | AATT | 2 cut(s) | 66, 229 |
| TatI | WGTACW | 1 cut(s) | 152 |
| TfiI | GAWTC | 2 cut(s) | 482, 508 |
| Tru1I | TTAA | 2 cut(s) | 149, 440 |
| Tru9I | TTAA | 2 cut(s) | 149, 440 |
| TseI | GCWGC | 3 cut(s) | 163, 310, 411 |
| TspDTI | ATGAA | 2 cut(s) | 105, 495 |
| Tth111I | GACNNNGTC | 1 cut(s) | 467 |
| VpaK11BI | GGWCC | 1 cut(s) | 141 |
| XbaI | TCTAGA | 1 cut(s) | 331 |
| XceI | RCATGY | 2 cut(s) | 183, 221 |
| XspI | CTAG | 3 cut(s) | 14, 51, 332 |