Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 471, 520 |
| AccB1I | GGYRCC | 2 cut(s) | 556, 1150 |
| AccI | GTMKAC | 1 cut(s) | 968 |
| AccIII | TCCGGA | 1 cut(s) | 367 |
| AciI | CCGC | 4 cut(s) | 241, 497, 710, 916 |
| AclWI | GGATC | 2 cut(s) | 839, 852 |
| AcsI | RAATTY | 1 cut(s) | 84 |
| AfaI | GTAC | 4 cut(s) | 392, 770, 810, 958 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 499, 685, 759, 840, 1147 |
| AgsI | TTSAA | 6 cut(s) | 584, 693, 1010, 1075, 1145, 1160 |
| AjnI | CCWGG | 2 cut(s) | 398, 889 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 516, 548 |
| AluBI | AGCT | 8 cut(s) | 64, 80, 93, 436, 632, 797, 803, 1052 |
| AluI | AGCT | 8 cut(s) | 64, 80, 93, 436, 632, 797, 803, 1052 |
| AlwI | GGATC | 2 cut(s) | 839, 852 |
| Ama87I | CYCGRG | 1 cut(s) | 752 |
| Aor13HI | TCCGGA | 1 cut(s) | 367 |
| AoxI | GGCC | 2 cut(s) | 396, 945 |
| ApoI | RAATTY | 1 cut(s) | 84 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1164 |
| AspLEI | GCGC | 3 cut(s) | 130, 255, 513 |
| AspS9I | GGNCC | 2 cut(s) | 483, 945 |
| AsuHPI | GGTGA | 4 cut(s) | 233, 668, 710, 1186 |
| AvaI | CYCGRG | 1 cut(s) | 752 |
| AvaII | GGWCC | 1 cut(s) | 483 |
| AxyI | CCTNAGG | 1 cut(s) | 681 |
| BaeGI | GKGCMC | 1 cut(s) | 561 |
| BamHI | GGATCC | 1 cut(s) | 844 |
| BanI | GGYRCC | 2 cut(s) | 556, 1150 |
| BanII | GRGCYC | 2 cut(s) | 1069, 1186 |
| BbsI | GAAGAC | 3 cut(s) | 1017, 1018, 1157 |
| BccI | CCATC | 2 cut(s) | 515, 1105 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 2 cut(s) | 400, 891 |
| BciVI | GTATCC | 1 cut(s) | 716 |
| BclI | TGATCA | 1 cut(s) | 1126 |
| BfaI | CTAG | 3 cut(s) | 437, 798, 804 |
| BfmI | CTRYAG | 1 cut(s) | 591 |
| BfuAI | ACCTGC | 2 cut(s) | 471, 520 |
| BfuI | GTATCC | 1 cut(s) | 716 |
| BlpI | GCTNAGC | 1 cut(s) | 432 |
| BmcAI | AGTACT | 2 cut(s) | 810, 958 |
| Bme1390I | CCNGG | 2 cut(s) | 400, 891 |
| Bme18I | GGWCC | 1 cut(s) | 483 |
| BmeT110I | CYCGRG | 1 cut(s) | 752 |
| BmgT120I | GGNCC | 2 cut(s) | 483, 945 |
| BmiI | GGNNCC | 6 cut(s) | 558, 750, 846, 888, 1068, 1152 |
| BmrFI | CCNGG | 2 cut(s) | 400, 891 |
| BmrI | ACTGGG | 1 cut(s) | 799 |
| BmsI | GCATC | 1 cut(s) | 1110 |
| BmuI | ACTGGG | 1 cut(s) | 799 |
| BpiI | GAAGAC | 3 cut(s) | 1017, 1018, 1157 |
| BpmI | CTGGAG | 1 cut(s) | 370 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 432 |
| BpuEI | CTTGAG | 1 cut(s) | 1032 |
| BsaJI | CCNNGG | 1 cut(s) | 834 |
| BsaWI | WCCGGW | 1 cut(s) | 367 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 499, 685, 759, 840, 1147 |
| Bse1I | ACTGG | 1 cut(s) | 794 |
| Bse21I | CCTNAGG | 1 cut(s) | 681 |
| Bse3DI | GCAATG | 1 cut(s) | 1033 |
| BseAI | TCCGGA | 1 cut(s) | 367 |
| BseBI | CCWGG | 2 cut(s) | 400, 891 |
| BseDI | CCNNGG | 1 cut(s) | 834 |
| BseGI | GGATG | 2 cut(s) | 526, 1125 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 499, 685, 759, 840, 1147 |
| BseMI | GCAATG | 1 cut(s) | 1033 |
| BseMII | CTCAG | 4 cut(s) | 103, 423, 672, 967 |
| BseNI | ACTGG | 1 cut(s) | 794 |
| BseRI | GAGGAG | 1 cut(s) | 1099 |
| BseSI | GKGCMC | 1 cut(s) | 561 |
| BseYI | CCCAGC | 1 cut(s) | 839 |
| BsgI | GTGCAG | 1 cut(s) | 639 |
| BshFI | GGCC | 2 cut(s) | 398, 947 |
| BshNI | GGYRCC | 2 cut(s) | 556, 1150 |
| BsiHKCI | CYCGRG | 1 cut(s) | 752 |
| BsiSI | CCGG | 1 cut(s) | 368 |
| BslFI | GGGAC | 1 cut(s) | 455 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 499, 685, 759, 840, 1147 |
| BsmFI | GGGAC | 1 cut(s) | 455 |
| BsnI | GGCC | 2 cut(s) | 398, 947 |
| BsoBI | CYCGRG | 1 cut(s) | 752 |
| Bsp1286I | GDGCHC | 3 cut(s) | 561, 1069, 1186 |
| Bsp13I | TCCGGA | 1 cut(s) | 367 |
| Bsp1407I | TGTACA | 1 cut(s) | 390 |
| Bsp143I | GATC | 2 cut(s) | 844, 1126 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 432 |
| BspACI | CCGC | 4 cut(s) | 241, 497, 710, 916 |
| BspANI | GGCC | 2 cut(s) | 398, 947 |
| BspCNI | CTCAG | 4 cut(s) | 102, 424, 673, 966 |
| BspEI | TCCGGA | 1 cut(s) | 367 |
| BspLI | GGNNCC | 6 cut(s) | 558, 750, 846, 888, 1068, 1152 |
| BspMAI | CTGCAG | 1 cut(s) | 595 |
| BspMI | ACCTGC | 2 cut(s) | 471, 520 |
| BspPI | GGATC | 2 cut(s) | 839, 852 |
| BspT107I | GGYRCC | 2 cut(s) | 556, 1150 |
| BsrDI | GCAATG | 1 cut(s) | 1033 |
| BsrGI | TGTACA | 1 cut(s) | 390 |
| BsrI | ACTGG | 1 cut(s) | 794 |
| BssECI | CCNNGG | 1 cut(s) | 834 |
| BssMI | GATC | 2 cut(s) | 844, 1126 |
| BssNAI | GTATAC | 1 cut(s) | 969 |
| Bst1107I | GTATAC | 1 cut(s) | 969 |
| Bst2UI | CCWGG | 2 cut(s) | 400, 891 |
| Bst4CI | ACNGT | 4 cut(s) | 229, 416, 722, 861 |
| Bst6I | CTCTTC | 1 cut(s) | 752 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 136 |
| BstAUI | TGTACA | 1 cut(s) | 390 |
| BstC8I | GCNNGC | 4 cut(s) | 336, 591, 918, 922 |
| BstDEI | CTNAG | 6 cut(s) | 57, 89, 432, 681, 713, 953 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| BstF5I | GGATG | 2 cut(s) | 526, 1125 |
| BstHHI | GCGC | 3 cut(s) | 130, 255, 513 |
| BstKTI | GATC | 2 cut(s) | 847, 1129 |
| BstMBI | GATC | 2 cut(s) | 844, 1126 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 136, 335 |
| BstNI | CCWGG | 2 cut(s) | 400, 891 |
| BstSCI | CCNGG | 2 cut(s) | 398, 889 |
| BstSFI | CTRYAG | 1 cut(s) | 591 |
| BstSLI | GKGCMC | 1 cut(s) | 561 |
| BstV2I | GAAGAC | 3 cut(s) | 1017, 1018, 1157 |
| BstX2I | RGATCY | 1 cut(s) | 844 |
| BstYI | RGATCY | 1 cut(s) | 844 |
| BstZ17I | GTATAC | 1 cut(s) | 969 |
| Bsu36I | CCTNAGG | 1 cut(s) | 681 |
| BsuI | GTATCC | 1 cut(s) | 716 |
| BsuRI | GGCC | 2 cut(s) | 398, 947 |
| BtsCI | GGATG | 2 cut(s) | 526, 1125 |
| BveI | ACCTGC | 2 cut(s) | 471, 520 |
| Cac8I | GCNNGC | 4 cut(s) | 336, 591, 918, 922 |
| CfoI | GCGC | 3 cut(s) | 130, 255, 513 |
| Cfr13I | GGNCC | 2 cut(s) | 483, 945 |
| Csp6I | GTAC | 4 cut(s) | 391, 769, 809, 957 |
| CviAII | CATG | 9 cut(s) | 151, 295, 331, 459, 494, 545, 1022, 1130, 1171 |
| CviQI | GTAC | 4 cut(s) | 391, 769, 809, 957 |
| DdeI | CTNAG | 6 cut(s) | 57, 89, 432, 681, 713, 953 |
| DpnI | GATC | 2 cut(s) | 846, 1128 |
| DpnII | GATC | 2 cut(s) | 844, 1126 |
| Eam1104I | CTCTTC | 1 cut(s) | 752 |
| EarI | CTCTTC | 1 cut(s) | 752 |
| Eco24I | GRGCYC | 2 cut(s) | 1069, 1186 |
| Eco47I | GGWCC | 1 cut(s) | 483 |
| Eco81I | CCTNAGG | 1 cut(s) | 681 |
| Eco88I | CYCGRG | 1 cut(s) | 752 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| EcoRII | CCWGG | 2 cut(s) | 398, 889 |
| EcoT22I | ATGCAT | 1 cut(s) | 1135 |
| EcoT38I | GRGCYC | 2 cut(s) | 1069, 1186 |
| FaeI | CATG | 9 cut(s) | 154, 298, 334, 462, 497, 548, 1025, 1133, 1174 |
| FaqI | GGGAC | 1 cut(s) | 455 |
| FatI | CATG | 9 cut(s) | 150, 294, 330, 458, 493, 544, 1021, 1129, 1170 |
| FauI | CCCGC | 3 cut(s) | 490, 717, 909 |
| FbaI | TGATCA | 1 cut(s) | 1126 |
| FblI | GTMKAC | 1 cut(s) | 968 |
| FokI | GGATG | 2 cut(s) | 533, 1132 |
| FriOI | GRGCYC | 2 cut(s) | 1069, 1186 |
| FspBI | CTAG | 3 cut(s) | 437, 798, 804 |
| GlaI | GCGC | 3 cut(s) | 129, 254, 512 |
| GsaI | CCCAGC | 1 cut(s) | 843 |
| GsuI | CTGGAG | 1 cut(s) | 370 |
| HaeIII | GGCC | 2 cut(s) | 398, 947 |
| HapII | CCGG | 1 cut(s) | 368 |
| HhaI | GCGC | 3 cut(s) | 130, 255, 513 |
| Hin1II | CATG | 9 cut(s) | 154, 298, 334, 462, 497, 548, 1025, 1133, 1174 |
| Hin6I | GCGC | 3 cut(s) | 128, 253, 511 |
| HinP1I | GCGC | 3 cut(s) | 128, 253, 511 |
| HincII | GTYRAC | 1 cut(s) | 232 |
| HindII | GTYRAC | 1 cut(s) | 232 |
| HindIII | AAGCTT | 1 cut(s) | 62 |
| HinfI | GANTC | 6 cut(s) | 51, 244, 371, 443, 580, 697 |
| HpaII | CCGG | 1 cut(s) | 368 |
| HphI | GGTGA | 4 cut(s) | 233, 668, 710, 1186 |
| Hpy166II | GTNNAC | 5 cut(s) | 232, 486, 535, 831, 969 |
| Hpy188I | TCNGA | 3 cut(s) | 579, 619, 666 |
| Hpy188III | TCNNGA | 2 cut(s) | 112, 368 |
| Hpy8I | GTNNAC | 5 cut(s) | 232, 486, 535, 831, 969 |
| HpyAV | CCTTC | 3 cut(s) | 281, 519, 1151 |
| HpyCH4III | ACNGT | 4 cut(s) | 229, 416, 722, 861 |
| HpyCH4IV | ACGT | 1 cut(s) | 1162 |
| HpyCH4V | TGCA | 5 cut(s) | 383, 593, 656, 901, 1133 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 136, 335 |
| HpyF3I | CTNAG | 6 cut(s) | 57, 89, 432, 681, 713, 953 |
| HpySE526I | ACGT | 1 cut(s) | 1162 |
| Hsp92II | CATG | 9 cut(s) | 154, 298, 334, 462, 497, 548, 1025, 1133, 1174 |
| HspAI | GCGC | 3 cut(s) | 128, 253, 511 |
| Kpn2I | TCCGGA | 1 cut(s) | 367 |
| Ksp22I | TGATCA | 1 cut(s) | 1126 |
| Kzo9I | GATC | 2 cut(s) | 844, 1126 |
| LmnI | GCTCC | 1 cut(s) | 1072 |
| LweI | GCATC | 1 cut(s) | 1110 |
| MaeI | CTAG | 3 cut(s) | 437, 798, 804 |
| MaeII | ACGT | 1 cut(s) | 1162 |
| MaeIII | GTNAC | 2 cut(s) | 221, 716 |
| MalI | GATC | 2 cut(s) | 846, 1128 |
| MboI | GATC | 2 cut(s) | 844, 1126 |
| MboII | GAAGA | 4 cut(s) | 769, 1018, 1022, 1157 |
| MfeI | CAATTG | 2 cut(s) | 562, 1041 |
| MflI | RGATCY | 1 cut(s) | 844 |
| MhlI | GDGCHC | 3 cut(s) | 561, 1069, 1186 |
| MlyI | GAGTC | 3 cut(s) | 45, 365, 437 |
| MmeI | TCCRAC | 1 cut(s) | 53 |
| Mph1103I | ATGCAT | 1 cut(s) | 1135 |
| MroI | TCCGGA | 1 cut(s) | 367 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1164 |
| MseI | TTAA | 6 cut(s) | 42, 117, 303, 504, 777, 1110 |
| MslI | CAYNNNNRTG | 1 cut(s) | 457 |
| MspI | CCGG | 1 cut(s) | 368 |
| MspR9I | CCNGG | 2 cut(s) | 400, 891 |
| MunI | CAATTG | 2 cut(s) | 562, 1041 |
| MvaI | CCWGG | 2 cut(s) | 400, 891 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 136, 335 |
| NdeII | GATC | 2 cut(s) | 844, 1126 |
| NlaIII | CATG | 9 cut(s) | 154, 298, 334, 462, 497, 548, 1025, 1133, 1174 |
| NlaIV | GGNNCC | 6 cut(s) | 558, 750, 846, 888, 1068, 1152 |
| NmeAIII | GCCGAG | 1 cut(s) | 815 |
| NmuCI | GTSAC | 2 cut(s) | 221, 716 |
| NsiI | ATGCAT | 1 cut(s) | 1135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1164 |
| PfeI | GAWTC | 3 cut(s) | 244, 580, 697 |
| PflFI | GACNNNGTC | 1 cut(s) | 818 |
| PfoI | TCCNGGA | 1 cut(s) | 889 |
| PleI | GAGTC | 3 cut(s) | 45, 365, 437 |
| PpsI | GAGTC | 3 cut(s) | 45, 365, 437 |
| Psp6I | CCWGG | 2 cut(s) | 398, 889 |
| PspFI | CCCAGC | 1 cut(s) | 839 |
| PspGI | CCWGG | 2 cut(s) | 398, 889 |
| PspN4I | GGNNCC | 6 cut(s) | 558, 750, 846, 888, 1068, 1152 |
| PspPI | GGNCC | 2 cut(s) | 483, 945 |
| PstI | CTGCAG | 1 cut(s) | 595 |
| PsuI | RGATCY | 1 cut(s) | 844 |
| PsyI | GACNNNGTC | 1 cut(s) | 818 |
| RsaI | GTAC | 4 cut(s) | 392, 770, 810, 958 |
| RsaNI | GTAC | 4 cut(s) | 391, 769, 809, 957 |
| RseI | CAYNNNNRTG | 1 cut(s) | 457 |
| SaqAI | TTAA | 6 cut(s) | 42, 117, 303, 504, 777, 1110 |
| Sau3AI | GATC | 2 cut(s) | 844, 1126 |
| Sau96I | GGNCC | 2 cut(s) | 483, 945 |
| ScaI | AGTACT | 2 cut(s) | 810, 958 |
| SchI | GAGTC | 3 cut(s) | 45, 365, 437 |
| ScrFI | CCNGG | 2 cut(s) | 400, 891 |
| SduI | GDGCHC | 3 cut(s) | 561, 1069, 1186 |
| SfaNI | GCATC | 1 cut(s) | 1110 |
| SfcI | CTRYAG | 1 cut(s) | 591 |
| SinI | GGWCC | 1 cut(s) | 483 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 457 |
| SmlI | CTYRAG | 1 cut(s) | 1047 |
| SmoI | CTYRAG | 1 cut(s) | 1047 |
| SsiI | CCGC | 4 cut(s) | 241, 497, 710, 916 |
| SspMI | CTAG | 3 cut(s) | 437, 798, 804 |
| StyD4I | CCNGG | 2 cut(s) | 398, 889 |
| TaaI | ACNGT | 4 cut(s) | 229, 416, 722, 861 |
| TaiI | ACGT | 1 cut(s) | 1165 |
| TaqI | TCGA | 1 cut(s) | 627 |
| TatI | WGTACW | 4 cut(s) | 390, 768, 808, 956 |
| TfiI | GAWTC | 3 cut(s) | 244, 580, 697 |
| Tru1I | TTAA | 6 cut(s) | 42, 117, 303, 504, 777, 1110 |
| Tru9I | TTAA | 6 cut(s) | 42, 117, 303, 504, 777, 1110 |
| TseFI | GTSAC | 2 cut(s) | 221, 716 |
| Tsp45I | GTSAC | 2 cut(s) | 221, 716 |
| TspDTI | ATGAA | 2 cut(s) | 167, 236 |
| Tth111I | GACNNNGTC | 1 cut(s) | 818 |
| VpaK11BI | GGWCC | 1 cut(s) | 483 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1145 |
| XapI | RAATTY | 1 cut(s) | 84 |
| XmiI | GTMKAC | 1 cut(s) | 968 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1164 |
| XspI | CTAG | 3 cut(s) | 437, 798, 804 |
| ZrmI | AGTACT | 2 cut(s) | 810, 958 |
| Zsp2I | ATGCAT | 1 cut(s) | 1135 |