Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 107 |
| AccB1I | GGYRCC | 1 cut(s) | 133 |
| AciI | CCGC | 2 cut(s) | 11, 266 |
| AclWI | GGATC | 3 cut(s) | 119, 517, 530 |
| AflII | CTTAAG | 1 cut(s) | 545 |
| AgsI | TTSAA | 1 cut(s) | 70 |
| AjiI | CACGTC | 1 cut(s) | 103 |
| AluBI | AGCT | 1 cut(s) | 300 |
| AluI | AGCT | 1 cut(s) | 300 |
| Alw21I | GWGCWC | 1 cut(s) | 404 |
| Alw26I | GTCTC | 1 cut(s) | 115 |
| Alw44I | GTGCAC | 1 cut(s) | 400 |
| AlwI | GGATC | 3 cut(s) | 119, 517, 530 |
| AoxI | GGCC | 1 cut(s) | 408 |
| ApaLI | GTGCAC | 1 cut(s) | 400 |
| ApeKI | GCWGC | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 1 cut(s) | 404 |
| BamHI | GGATCC | 1 cut(s) | 522 |
| BanI | GGYRCC | 1 cut(s) | 133 |
| Bbv12I | GWGCWC | 1 cut(s) | 404 |
| BcoDI | GTCTC | 1 cut(s) | 115 |
| BfrI | CTTAAG | 1 cut(s) | 545 |
| BisI | GCNGC | 1 cut(s) | 9 |
| BlsI | GCNGC | 1 cut(s) | 10 |
| BmgBI | CACGTC | 1 cut(s) | 103 |
| BmiI | GGNNCC | 2 cut(s) | 135, 524 |
| BsaJI | CCNNGG | 2 cut(s) | 128, 405 |
| BsaWI | WCCGGW | 1 cut(s) | 339 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 460, 490 |
| BseDI | CCNNGG | 2 cut(s) | 128, 405 |
| BseMII | CTCAG | 3 cut(s) | 224, 287, 414 |
| BseRI | GAGGAG | 1 cut(s) | 321 |
| BseSI | GKGCMC | 1 cut(s) | 404 |
| BsgI | GTGCAG | 1 cut(s) | 428 |
| BshFI | GGCC | 1 cut(s) | 410 |
| BshNI | GGYRCC | 1 cut(s) | 133 |
| BsiHKAI | GWGCWC | 1 cut(s) | 404 |
| BsiSI | CCGG | 1 cut(s) | 340 |
| BslFI | GGGAC | 2 cut(s) | 110, 193 |
| BsmAI | GTCTC | 1 cut(s) | 115 |
| BsmFI | GGGAC | 2 cut(s) | 110, 193 |
| BsnI | GGCC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 404 |
| Bsp143I | GATC | 2 cut(s) | 124, 522 |
| Bsp19I | CCATGG | 1 cut(s) | 405 |
| BspACI | CCGC | 2 cut(s) | 11, 266 |
| BspANI | GGCC | 1 cut(s) | 410 |
| BspCNI | CTCAG | 3 cut(s) | 225, 288, 415 |
| BspLI | GGNNCC | 2 cut(s) | 135, 524 |
| BspPI | GGATC | 3 cut(s) | 119, 517, 530 |
| BspT107I | GGYRCC | 1 cut(s) | 133 |
| BspTI | CTTAAG | 1 cut(s) | 545 |
| BssECI | CCNNGG | 2 cut(s) | 128, 405 |
| BssMI | GATC | 2 cut(s) | 124, 522 |
| BssT1I | CCWWGG | 2 cut(s) | 128, 405 |
| Bst4CI | ACNGT | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 2 cut(s) | 243, 550 |
| BstAFI | CTTAAG | 1 cut(s) | 545 |
| BstC8I | GCNNGC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 3 cut(s) | 233, 296, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 405 |
| BstKTI | GATC | 2 cut(s) | 127, 525 |
| BstMAI | GTCTC | 1 cut(s) | 115 |
| BstMBI | GATC | 2 cut(s) | 124, 522 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 514 |
| BstNSI | RCATGY | 1 cut(s) | 477 |
| BstSLI | GKGCMC | 1 cut(s) | 404 |
| BstX2I | RGATCY | 1 cut(s) | 522 |
| BstYI | RGATCY | 1 cut(s) | 522 |
| BsuRI | GGCC | 1 cut(s) | 410 |
| BtgI | CCRYGG | 1 cut(s) | 405 |
| BtrI | CACGTC | 1 cut(s) | 103 |
| BtsIMutI | CAGTG | 1 cut(s) | 293 |
| Cac8I | GCNNGC | 1 cut(s) | 302 |
| CseI | GACGC | 1 cut(s) | 273 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 282, 317 |
| CviAII | CATG | 7 cut(s) | 36, 325, 374, 406, 474, 518, 569 |
| CviJI | RGCY | 5 cut(s) | 8, 232, 300, 349, 410 |
| CviKI_1 | RGCY | 5 cut(s) | 8, 232, 300, 349, 410 |
| DdeI | CTNAG | 3 cut(s) | 233, 296, 423 |
| DpnI | GATC | 2 cut(s) | 126, 524 |
| DpnII | GATC | 2 cut(s) | 124, 522 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 107 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 107 |
| Eam1104I | CTCTTC | 2 cut(s) | 243, 550 |
| EarI | CTCTTC | 2 cut(s) | 243, 550 |
| EciI | GGCGGA | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 2 cut(s) | 128, 405 |
| EcoT14I | CCWWGG | 2 cut(s) | 128, 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 570 |
| ErhI | CCWWGG | 2 cut(s) | 128, 405 |
| FaeI | CATG | 7 cut(s) | 39, 328, 377, 409, 477, 521, 572 |
| FaiI | YATR | 9 cut(s) | 37, 326, 354, 375, 407, 475, 519, 566, 570 |
| FaqI | GGGAC | 2 cut(s) | 110, 193 |
| FatI | CATG | 7 cut(s) | 35, 324, 373, 405, 473, 517, 568 |
| Fnu4HI | GCNGC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 1 cut(s) | 9 |
| GluI | GCNGC | 1 cut(s) | 9 |
| HaeIII | GGCC | 1 cut(s) | 410 |
| HapII | CCGG | 1 cut(s) | 340 |
| HgaI | GACGC | 1 cut(s) | 273 |
| Hin1II | CATG | 7 cut(s) | 39, 328, 377, 409, 477, 521, 572 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HinfI | GANTC | 4 cut(s) | 26, 212, 289, 321 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| HpaII | CCGG | 1 cut(s) | 340 |
| Hpy166II | GTNNAC | 2 cut(s) | 394, 402 |
| Hpy188I | TCNGA | 3 cut(s) | 217, 262, 276 |
| Hpy188III | TCNNGA | 1 cut(s) | 552 |
| Hpy8I | GTNNAC | 2 cut(s) | 394, 402 |
| Hpy99I | CGWCG | 2 cut(s) | 104, 289 |
| HpyAV | CCTTC | 1 cut(s) | 536 |
| HpyCH4III | ACNGT | 1 cut(s) | 84 |
| HpyCH4IV | ACGT | 2 cut(s) | 102, 416 |
| HpyCH4V | TGCA | 5 cut(s) | 402, 445, 473, 517, 568 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 514 |
| HpyF3I | CTNAG | 3 cut(s) | 233, 296, 423 |
| HpySE526I | ACGT | 2 cut(s) | 102, 416 |
| Hsp92II | CATG | 7 cut(s) | 39, 328, 377, 409, 477, 521, 572 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| Kzo9I | GATC | 2 cut(s) | 124, 522 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| LpnPI | CCDG | 2 cut(s) | 353, 382 |
| MaeII | ACGT | 2 cut(s) | 102, 416 |
| MaeIII | GTNAC | 1 cut(s) | 549 |
| MalI | GATC | 2 cut(s) | 126, 524 |
| MboI | GATC | 2 cut(s) | 124, 522 |
| MboII | GAAGA | 3 cut(s) | 260, 289, 567 |
| MflI | RGATCY | 1 cut(s) | 522 |
| MhlI | GDGCHC | 1 cut(s) | 404 |
| MluCI | AATT | 2 cut(s) | 70, 239 |
| MmeI | TCCRAC | 2 cut(s) | 225, 408 |
| MnlI | CCTC | 7 cut(s) | 14, 169, 256, 299, 307, 421, 424 |
| Mph1103I | ATGCAT | 1 cut(s) | 570 |
| MseI | TTAA | 3 cut(s) | 381, 393, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 34 |
| MspCI | CTTAAG | 1 cut(s) | 545 |
| MspI | CCGG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 514 |
| NcoI | CCATGG | 1 cut(s) | 405 |
| NdeII | GATC | 2 cut(s) | 124, 522 |
| NlaIII | CATG | 7 cut(s) | 39, 328, 377, 409, 477, 521, 572 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 524 |
| NmuCI | GTSAC | 1 cut(s) | 549 |
| NsiI | ATGCAT | 1 cut(s) | 570 |
| NspI | RCATGY | 1 cut(s) | 477 |
| PfeI | GAWTC | 4 cut(s) | 26, 212, 289, 321 |
| PkrI | GCNGC | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 524 |
| PsuI | RGATCY | 1 cut(s) | 522 |
| RseI | CAYNNNNRTG | 1 cut(s) | 34 |
| SaqAI | TTAA | 3 cut(s) | 381, 393, 546 |
| SatI | GCNGC | 1 cut(s) | 9 |
| Sau3AI | GATC | 2 cut(s) | 124, 522 |
| SduI | GDGCHC | 1 cut(s) | 404 |
| SetI | ASST | 6 cut(s) | 105, 302, 401, 419, 465, 492 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 34 |
| SmlI | CTYRAG | 1 cut(s) | 545 |
| SmoI | CTYRAG | 1 cut(s) | 545 |
| Sse9I | AATT | 2 cut(s) | 70, 239 |
| SsiI | CCGC | 2 cut(s) | 11, 266 |
| StyI | CCWWGG | 2 cut(s) | 128, 405 |
| TaaI | ACNGT | 1 cut(s) | 84 |
| TaiI | ACGT | 2 cut(s) | 105, 419 |
| TaqI | TCGA | 1 cut(s) | 287 |
| TasI | AATT | 2 cut(s) | 70, 239 |
| TfiI | GAWTC | 4 cut(s) | 26, 212, 289, 321 |
| Tru1I | TTAA | 3 cut(s) | 381, 393, 546 |
| Tru9I | TTAA | 3 cut(s) | 381, 393, 546 |
| TscAI | CASTG | 1 cut(s) | 300 |
| TseFI | GTSAC | 1 cut(s) | 549 |
| TseI | GCWGC | 1 cut(s) | 8 |
| Tsp45I | GTSAC | 1 cut(s) | 549 |
| TspDTI | ATGAA | 2 cut(s) | 18, 313 |
| TspRI | CASTG | 1 cut(s) | 300 |
| Vha464I | CTTAAG | 1 cut(s) | 545 |
| VneI | GTGCAC | 1 cut(s) | 400 |
| XceI | RCATGY | 1 cut(s) | 477 |
| Zsp2I | ATGCAT | 1 cut(s) | 570 |