ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 254, 568 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 585 |
| AccI | GTMKAC | 1 cut(s) | 684 |
| AciI | CCGC | 2 cut(s) | 81, 135 |
| AclWI | GGATC | 1 cut(s) | 318 |
| AcoI | YGGCCR | 1 cut(s) | 78 |
| AcsI | RAATTY | 2 cut(s) | 98, 272 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 356, 489, 585 |
| AgeI | ACCGGT | 1 cut(s) | 687 |
| AgsI | TTSAA | 7 cut(s) | 20, 46, 191, 217, 397, 496, 515 |
| AjnI | CCWGG | 1 cut(s) | 644 |
| AluBI | AGCT | 5 cut(s) | 42, 213, 222, 499, 651 |
| AluI | AGCT | 5 cut(s) | 42, 213, 222, 499, 651 |
| Alw21I | GWGCWC | 1 cut(s) | 653 |
| Alw26I | GTCTC | 4 cut(s) | 66, 315, 591, 623 |
| AlwI | GGATC | 1 cut(s) | 318 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 29, 225 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| AoxI | GGCC | 3 cut(s) | 78, 162, 376 |
| ApeKI | GCWGC | 2 cut(s) | 23, 228 |
| ApoI | RAATTY | 2 cut(s) | 98, 272 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 320, 352 |
| AsiGI | ACCGGT | 1 cut(s) | 687 |
| AspS9I | GGNCC | 1 cut(s) | 377 |
| AsuC2I | CCSGG | 2 cut(s) | 195, 380 |
| AsuHPI | GGTGA | 1 cut(s) | 371 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| BanII | GRGCYC | 1 cut(s) | 653 |
| BbsI | GAAGAC | 4 cut(s) | 82, 256, 385, 564 |
| Bbv12I | GWGCWC | 1 cut(s) | 653 |
| BbvI | GCAGC | 2 cut(s) | 35, 215 |
| BccI | CCATC | 2 cut(s) | 518, 553 |
| BceAI | ACGGC | 2 cut(s) | 239, 492 |
| BciT130I | CCWGG | 1 cut(s) | 646 |
| BcnI | CCSGG | 2 cut(s) | 195, 380 |
| BcoDI | GTCTC | 4 cut(s) | 66, 315, 591, 623 |
| BfaI | CTAG | 5 cut(s) | 39, 68, 110, 210, 242 |
| BfmI | CTRYAG | 1 cut(s) | 608 |
| BisI | GCNGC | 3 cut(s) | 24, 81, 229 |
| BlsI | GCNGC | 3 cut(s) | 25, 82, 230 |
| Bme1390I | CCNGG | 3 cut(s) | 195, 380, 646 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 1 cut(s) | 377 |
| BmiI | GGNNCC | 1 cut(s) | 480 |
| BmrFI | CCNGG | 3 cut(s) | 195, 380, 646 |
| BpiI | GAAGAC | 4 cut(s) | 82, 256, 385, 564 |
| BpmI | CTGGAG | 2 cut(s) | 314, 339 |
| BpuMI | CCSGG | 2 cut(s) | 195, 380 |
| BsaAI | YACGTR | 1 cut(s) | 503 |
| BsaWI | WCCGGW | 1 cut(s) | 687 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 287, 317 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 356, 489, 585 |
| Bse118I | RCCGGY | 1 cut(s) | 687 |
| Bse1I | ACTGG | 3 cut(s) | 297, 475, 590 |
| BseBI | CCWGG | 1 cut(s) | 646 |
| BseGI | GGATG | 1 cut(s) | 719 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 356, 489, 585 |
| BseMII | CTCAG | 3 cut(s) | 72, 246, 297 |
| BseNI | ACTGG | 3 cut(s) | 297, 475, 590 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| BseXI | GCAGC | 2 cut(s) | 35, 215 |
| Bsh1285I | CGRYCG | 2 cut(s) | 688, 729 |
| BshFI | GGCC | 3 cut(s) | 80, 164, 378 |
| BshTI | ACCGGT | 1 cut(s) | 687 |
| BsiEI | CGRYCG | 2 cut(s) | 688, 729 |
| BsiHKAI | GWGCWC | 1 cut(s) | 653 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BsiSI | CCGG | 3 cut(s) | 194, 380, 688 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 356, 489, 585 |
| BsmAI | GTCTC | 4 cut(s) | 66, 315, 591, 623 |
| BsmBI | CGTCTC | 1 cut(s) | 315 |
| BsnI | GGCC | 3 cut(s) | 80, 164, 378 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 1 cut(s) | 653 |
| Bsp143I | GATC | 3 cut(s) | 154, 310, 726 |
| BspACI | CCGC | 2 cut(s) | 81, 135 |
| BspANI | GGCC | 3 cut(s) | 80, 164, 378 |
| BspCNI | CTCAG | 3 cut(s) | 71, 245, 298 |
| BspLI | GGNNCC | 1 cut(s) | 480 |
| BspMAI | CTGCAG | 1 cut(s) | 612 |
| BspPI | GGATC | 1 cut(s) | 318 |
| BspQI | GCTCTTC | 1 cut(s) | 449 |
| BsrFI | RCCGGY | 1 cut(s) | 687 |
| BsrI | ACTGG | 3 cut(s) | 297, 475, 590 |
| BssAI | RCCGGY | 1 cut(s) | 687 |
| BssMI | GATC | 3 cut(s) | 154, 310, 726 |
| Bst2UI | CCWGG | 1 cut(s) | 646 |
| Bst4CI | ACNGT | 3 cut(s) | 354, 401, 620 |
| Bst6I | CTCTTC | 2 cut(s) | 351, 449 |
| BstBAI | YACGTR | 1 cut(s) | 503 |
| BstDEI | CTNAG | 5 cut(s) | 58, 232, 306, 486, 564 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 487 |
| BstF5I | GGATG | 1 cut(s) | 719 |
| BstKTI | GATC | 3 cut(s) | 157, 313, 729 |
| BstMAI | GTCTC | 4 cut(s) | 66, 315, 591, 623 |
| BstMBI | GATC | 3 cut(s) | 154, 310, 726 |
| BstMCI | CGRYCG | 2 cut(s) | 688, 729 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 48, 219, 228, 251 |
| BstNI | CCWGG | 1 cut(s) | 646 |
| BstSCI | CCNGG | 3 cut(s) | 193, 378, 644 |
| BstSFI | CTRYAG | 1 cut(s) | 608 |
| BstV1I | GCAGC | 2 cut(s) | 35, 215 |
| BstV2I | GAAGAC | 4 cut(s) | 82, 256, 385, 564 |
| BsuRI | GGCC | 3 cut(s) | 80, 164, 378 |
| BtgZI | GCGATG | 1 cut(s) | 235 |
| BtsCI | GGATG | 1 cut(s) | 719 |
| BtsIMutI | CAGTG | 3 cut(s) | 290, 359, 625 |
| CaiI | CAGNNNCTG | 2 cut(s) | 29, 225 |
| Cfr10I | RCCGGY | 1 cut(s) | 687 |
| Cfr13I | GGNCC | 1 cut(s) | 377 |
| CseI | GACGC | 2 cut(s) | 40, 695 |
| CspAI | ACCGGT | 1 cut(s) | 687 |
| CviAII | CATG | 2 cut(s) | 314, 655 |
| DdeI | CTNAG | 5 cut(s) | 58, 232, 306, 486, 564 |
| DpnI | GATC | 3 cut(s) | 156, 312, 728 |
| DpnII | GATC | 3 cut(s) | 154, 310, 726 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 254, 568 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 254, 568 |
| EaeI | YGGCCR | 1 cut(s) | 78 |
| Eam1104I | CTCTTC | 2 cut(s) | 351, 449 |
| EarI | CTCTTC | 2 cut(s) | 351, 449 |
| EciI | GGCGGA | 1 cut(s) | 124 |
| Ecl136II | GAGCTC | 1 cut(s) | 651 |
| Eco147I | AGGCCT | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 1 cut(s) | 653 |
| Eco53kI | GAGCTC | 1 cut(s) | 651 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoICRI | GAGCTC | 1 cut(s) | 651 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 487 |
| EcoRI | GAATTC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 644 |
| EcoT38I | GRGCYC | 1 cut(s) | 653 |
| Esp3I | CGTCTC | 1 cut(s) | 315 |
| FaeI | CATG | 2 cut(s) | 317, 658 |
| FaiI | YATR | 7 cut(s) | 315, 446, 635, 656, 702, 704, 712 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 356, 388 |
| FatI | CATG | 2 cut(s) | 313, 654 |
| FauNDI | CATATG | 1 cut(s) | 702 |
| FblI | GTMKAC | 1 cut(s) | 684 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 81, 229 |
| FokI | GGATG | 1 cut(s) | 706 |
| FriOI | GRGCYC | 1 cut(s) | 653 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 81, 229 |
| FspBI | CTAG | 5 cut(s) | 39, 68, 110, 210, 242 |
| GluI | GCNGC | 3 cut(s) | 24, 81, 229 |
| GsuI | CTGGAG | 2 cut(s) | 314, 339 |
| HaeIII | GGCC | 3 cut(s) | 80, 164, 378 |
| HapII | CCGG | 3 cut(s) | 194, 380, 688 |
| HgaI | GACGC | 2 cut(s) | 40, 695 |
| Hin1II | CATG | 2 cut(s) | 317, 658 |
| HincII | GTYRAC | 2 cut(s) | 428, 685 |
| HindII | GTYRAC | 2 cut(s) | 428, 685 |
| HinfI | GANTC | 3 cut(s) | 125, 302, 733 |
| HpaII | CCGG | 3 cut(s) | 194, 380, 688 |
| HphI | GGTGA | 1 cut(s) | 371 |
| Hpy166II | GTNNAC | 3 cut(s) | 428, 465, 685 |
| Hpy188I | TCNGA | 5 cut(s) | 61, 95, 235, 269, 307 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 437, 515, 730, 737 |
| Hpy8I | GTNNAC | 3 cut(s) | 428, 465, 685 |
| HpyAV | CCTTC | 3 cut(s) | 176, 416, 617 |
| HpyCH4III | ACNGT | 3 cut(s) | 354, 401, 620 |
| HpyCH4IV | ACGT | 2 cut(s) | 502, 673 |
| HpyCH4V | TGCA | 2 cut(s) | 175, 610 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 48, 219, 228, 251 |
| HpyF3I | CTNAG | 5 cut(s) | 58, 232, 306, 486, 564 |
| HpySE526I | ACGT | 2 cut(s) | 502, 673 |
| Hsp92II | CATG | 2 cut(s) | 317, 658 |
| Kzo9I | GATC | 3 cut(s) | 154, 310, 726 |
| LguI | GCTCTTC | 1 cut(s) | 449 |
| LmnI | GCTCC | 4 cut(s) | 484, 528, 648, 656 |
| Lsp1109I | GCAGC | 2 cut(s) | 35, 215 |
| MaeI | CTAG | 5 cut(s) | 39, 68, 110, 210, 242 |
| MaeII | ACGT | 2 cut(s) | 502, 673 |
| MaeIII | GTNAC | 2 cut(s) | 359, 401 |
| MalI | GATC | 3 cut(s) | 156, 312, 728 |
| MboI | GATC | 3 cut(s) | 154, 310, 726 |
| MhlI | GDGCHC | 1 cut(s) | 653 |
| MluCI | AATT | 3 cut(s) | 98, 272, 420 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| MseI | TTAA | 1 cut(s) | 593 |
| MspI | CCGG | 3 cut(s) | 194, 380, 688 |
| MspR9I | CCNGG | 3 cut(s) | 195, 380, 646 |
| MvaI | CCWGG | 1 cut(s) | 646 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 48, 219, 228, 251 |
| NciI | CCSGG | 2 cut(s) | 195, 380 |
| NdeI | CATATG | 1 cut(s) | 702 |
| NdeII | GATC | 3 cut(s) | 154, 310, 726 |
| NlaIII | CATG | 2 cut(s) | 317, 658 |
| NlaIV | GGNNCC | 1 cut(s) | 480 |
| NmeAIII | GCCGAG | 1 cut(s) | 163 |
| NmuCI | GTSAC | 2 cut(s) | 359, 401 |
| PaeR7I | CTCGAG | 1 cut(s) | 437 |
| PceI | AGGCCT | 1 cut(s) | 164 |
| PciSI | GCTCTTC | 1 cut(s) | 449 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 273, 557 |
| PfeI | GAWTC | 2 cut(s) | 125, 733 |
| PflFI | GACNNNGTC | 1 cut(s) | 634 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 585 |
| PfoI | TCCNGGA | 1 cut(s) | 644 |
| PinAI | ACCGGT | 1 cut(s) | 687 |
| PkrI | GCNGC | 3 cut(s) | 25, 82, 230 |
| Ple19I | CGATCG | 1 cut(s) | 729 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| Ppu21I | YACGTR | 1 cut(s) | 503 |
| Psp124BI | GAGCTC | 1 cut(s) | 653 |
| Psp6I | CCWGG | 1 cut(s) | 644 |
| PspGI | CCWGG | 1 cut(s) | 644 |
| PspN4I | GGNNCC | 1 cut(s) | 480 |
| PspPI | GGNCC | 1 cut(s) | 377 |
| PstI | CTGCAG | 1 cut(s) | 612 |
| PstNI | CAGNNNCTG | 2 cut(s) | 29, 225 |
| PsyI | GACNNNGTC | 1 cut(s) | 634 |
| PvuI | CGATCG | 1 cut(s) | 729 |
| SacI | GAGCTC | 1 cut(s) | 653 |
| SalI | GTCGAC | 1 cut(s) | 683 |
| SapI | GCTCTTC | 1 cut(s) | 449 |
| SaqAI | TTAA | 1 cut(s) | 593 |
| SatI | GCNGC | 3 cut(s) | 24, 81, 229 |
| Sau3AI | GATC | 3 cut(s) | 154, 310, 726 |
| Sau96I | GGNCC | 1 cut(s) | 377 |
| SchI | GAGTC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 3 cut(s) | 195, 380, 646 |
| SduI | GDGCHC | 1 cut(s) | 653 |
| SfcI | CTRYAG | 1 cut(s) | 608 |
| Sfr274I | CTCGAG | 1 cut(s) | 437 |
| SlaI | CTCGAG | 1 cut(s) | 437 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 3 cut(s) | 98, 272, 420 |
| SseBI | AGGCCT | 1 cut(s) | 164 |
| SsiI | CCGC | 2 cut(s) | 81, 135 |
| SspMI | CTAG | 5 cut(s) | 39, 68, 110, 210, 242 |
| SstI | GAGCTC | 1 cut(s) | 653 |
| StuI | AGGCCT | 1 cut(s) | 164 |
| StyD4I | CCNGG | 3 cut(s) | 193, 378, 644 |
| TaaI | ACNGT | 3 cut(s) | 354, 401, 620 |
| TaiI | ACGT | 2 cut(s) | 505, 676 |
| TaqI | TCGA | 5 cut(s) | 276, 438, 551, 684, 725 |
| TasI | AATT | 3 cut(s) | 98, 272, 420 |
| TauI | GCSGC | 1 cut(s) | 83 |
| TfiI | GAWTC | 2 cut(s) | 125, 733 |
| Tru1I | TTAA | 1 cut(s) | 593 |
| Tru9I | TTAA | 1 cut(s) | 593 |
| TscAI | CASTG | 3 cut(s) | 297, 359, 625 |
| TseFI | GTSAC | 2 cut(s) | 359, 401 |
| TseI | GCWGC | 2 cut(s) | 23, 228 |
| Tsp45I | GTSAC | 2 cut(s) | 359, 401 |
| TspDTI | ATGAA | 1 cut(s) | 671 |
| TspRI | CASTG | 3 cut(s) | 297, 359, 625 |
| Tth111I | GACNNNGTC | 1 cut(s) | 634 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 585 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 487 |
| XapI | RAATTY | 2 cut(s) | 98, 272 |
| XhoI | CTCGAG | 1 cut(s) | 437 |
| XmiI | GTMKAC | 1 cut(s) | 684 |
| XspI | CTAG | 5 cut(s) | 39, 68, 110, 210, 242 |