Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 115 | 2.7e-27 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 382 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 331 |
| AccI | GTMKAC | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 320 |
| AclWI | GGATC | 1 cut(s) | 248 |
| AcuI | CTGAAG | 2 cut(s) | 30, 126 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 88 |
| AluBI | AGCT | 4 cut(s) | 104, 140, 367, 377 |
| AluI | AGCT | 4 cut(s) | 104, 140, 367, 377 |
| Alw26I | GTCTC | 2 cut(s) | 96, 165 |
| AlwI | GGATC | 1 cut(s) | 248 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 1 cut(s) | 145 |
| AspLEI | GCGC | 2 cut(s) | 337, 471 |
| AspS9I | GGNCC | 2 cut(s) | 289, 322 |
| AsuHPI | GGTGA | 1 cut(s) | 64 |
| AvaII | GGWCC | 1 cut(s) | 289 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BanI | GGYRCC | 1 cut(s) | 382 |
| BauI | CACGAG | 1 cut(s) | 441 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| BbvCI | CCTCAGC | 1 cut(s) | 378 |
| BbvI | GCAGC | 1 cut(s) | 157 |
| BccI | CCATC | 1 cut(s) | 216 |
| BcoDI | GTCTC | 2 cut(s) | 96, 165 |
| BfaI | CTAG | 2 cut(s) | 131, 345 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BisI | GCNGC | 2 cut(s) | 146, 321 |
| BlpI | GCTNAGC | 1 cut(s) | 373 |
| BlsI | GCNGC | 2 cut(s) | 147, 322 |
| Bme18I | GGWCC | 1 cut(s) | 289 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 2 cut(s) | 289, 322 |
| BmiI | GGNNCC | 1 cut(s) | 384 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 1 cut(s) | 185 |
| Bpu10I | CCTNAGC | 2 cut(s) | 112, 378 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 373 |
| BsaI | GGTCTC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 1 cut(s) | 464 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 15, 45 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| BseDI | CCNNGG | 1 cut(s) | 464 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| BseMII | CTCAG | 1 cut(s) | 369 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 1 cut(s) | 157 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BshNI | GGYRCC | 1 cut(s) | 382 |
| BslFI | GGGAC | 2 cut(s) | 148, 444 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 331, 412 |
| BsmAI | GTCTC | 2 cut(s) | 96, 165 |
| BsmFI | GGGAC | 2 cut(s) | 148, 444 |
| BsnI | GGCC | 1 cut(s) | 323 |
| Bso31I | GGTCTC | 1 cut(s) | 96 |
| Bsp1286I | GDGCHC | 1 cut(s) | 202 |
| Bsp143I | GATC | 1 cut(s) | 240 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 373 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 1 cut(s) | 370 |
| BspLI | GGNNCC | 1 cut(s) | 384 |
| BspPI | GGATC | 1 cut(s) | 248 |
| BspT107I | GGYRCC | 1 cut(s) | 382 |
| BspTNI | GGTCTC | 1 cut(s) | 96 |
| BssECI | CCNNGG | 1 cut(s) | 464 |
| BssMI | GATC | 1 cut(s) | 240 |
| BssNAI | GTATAC | 1 cut(s) | 395 |
| BssSI | CACGAG | 1 cut(s) | 441 |
| Bst1107I | GTATAC | 1 cut(s) | 395 |
| Bst2BI | CACGAG | 1 cut(s) | 441 |
| Bst4CI | ACNGT | 1 cut(s) | 182 |
| Bst6I | CTCTTC | 1 cut(s) | 6 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 1 cut(s) | 118 |
| BstDEI | CTNAG | 3 cut(s) | 112, 373, 378 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 410 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 2 cut(s) | 337, 471 |
| BstKTI | GATC | 1 cut(s) | 243 |
| BstMAI | GTCTC | 2 cut(s) | 96, 165 |
| BstMBI | GATC | 1 cut(s) | 240 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 317, 341 |
| BstNSI | RCATGY | 1 cut(s) | 120 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstV1I | GCAGC | 1 cut(s) | 157 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstZ17I | GTATAC | 1 cut(s) | 395 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BtsIMutI | CAGTG | 1 cut(s) | 202 |
| Cac8I | GCNNGC | 1 cut(s) | 118 |
| CfoI | GCGC | 2 cut(s) | 337, 471 |
| Cfr13I | GGNCC | 2 cut(s) | 289, 322 |
| CviAII | CATG | 4 cut(s) | 63, 117, 212, 398 |
| CviJI | RGCY | 6 cut(s) | 104, 110, 140, 323, 367, 377 |
| CviKI_1 | RGCY | 6 cut(s) | 104, 110, 140, 323, 367, 377 |
| DdeI | CTNAG | 3 cut(s) | 112, 373, 378 |
| DpnI | GATC | 1 cut(s) | 242 |
| DpnII | GATC | 1 cut(s) | 240 |
| DriI | GACNNNNNGTC | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 6 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 88 |
| EarI | CTCTTC | 1 cut(s) | 6 |
| Eco31I | GGTCTC | 1 cut(s) | 96 |
| Eco47I | GGWCC | 1 cut(s) | 289 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 126 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 410 |
| FaeI | CATG | 4 cut(s) | 66, 120, 215, 401 |
| FaiI | YATR | 9 cut(s) | 64, 118, 213, 266, 297, 327, 395, 399, 490 |
| FaqI | GGGAC | 2 cut(s) | 148, 444 |
| FatI | CATG | 4 cut(s) | 62, 116, 211, 397 |
| FblI | GTMKAC | 1 cut(s) | 394 |
| Fnu4HI | GCNGC | 2 cut(s) | 146, 321 |
| Fsp4HI | GCNGC | 2 cut(s) | 146, 321 |
| FspBI | CTAG | 2 cut(s) | 131, 345 |
| GlaI | GCGC | 2 cut(s) | 336, 470 |
| GluI | GCNGC | 2 cut(s) | 146, 321 |
| GsuI | CTGGAG | 1 cut(s) | 185 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| HhaI | GCGC | 2 cut(s) | 337, 471 |
| Hin1II | CATG | 4 cut(s) | 66, 120, 215, 401 |
| Hin6I | GCGC | 2 cut(s) | 335, 469 |
| HinP1I | GCGC | 2 cut(s) | 335, 469 |
| HphI | GGTGA | 1 cut(s) | 64 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 4 cut(s) | 35, 240, 293, 432 |
| Hpy188III | TCNNGA | 2 cut(s) | 164, 350 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| HpyAV | CCTTC | 2 cut(s) | 10, 14 |
| HpyCH4III | ACNGT | 1 cut(s) | 182 |
| HpyCH4V | TGCA | 3 cut(s) | 62, 120, 145 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 317, 341 |
| HpyF3I | CTNAG | 3 cut(s) | 112, 373, 378 |
| Hsp92II | CATG | 4 cut(s) | 66, 120, 215, 401 |
| HspAI | GCGC | 2 cut(s) | 335, 469 |
| Kzo9I | GATC | 1 cut(s) | 240 |
| LpnPI | CCDG | 3 cut(s) | 106, 149, 399 |
| Lsp1109I | GCAGC | 1 cut(s) | 157 |
| MaeI | CTAG | 2 cut(s) | 131, 345 |
| MalI | GATC | 1 cut(s) | 242 |
| MboI | GATC | 1 cut(s) | 240 |
| MboII | GAAGA | 2 cut(s) | 23, 230 |
| MhlI | GDGCHC | 1 cut(s) | 202 |
| MluCI | AATT | 2 cut(s) | 27, 480 |
| MmeI | TCCRAC | 3 cut(s) | 134, 218, 316 |
| MseI | TTAA | 2 cut(s) | 204, 485 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 317, 341 |
| NdeII | GATC | 1 cut(s) | 240 |
| NlaIII | CATG | 4 cut(s) | 66, 120, 215, 401 |
| NlaIV | GGNNCC | 1 cut(s) | 384 |
| NmeAIII | GCCGAG | 1 cut(s) | 445 |
| NspI | RCATGY | 1 cut(s) | 120 |
| PaeI | GCATGC | 1 cut(s) | 120 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 331 |
| PkrI | GCNGC | 2 cut(s) | 147, 322 |
| PspN4I | GGNNCC | 1 cut(s) | 384 |
| PspPI | GGNCC | 2 cut(s) | 289, 322 |
| SaqAI | TTAA | 2 cut(s) | 204, 485 |
| SatI | GCNGC | 2 cut(s) | 146, 321 |
| Sau3AI | GATC | 1 cut(s) | 240 |
| Sau96I | GGNCC | 2 cut(s) | 289, 322 |
| SduI | GDGCHC | 1 cut(s) | 202 |
| SinI | GGWCC | 1 cut(s) | 289 |
| SphI | GCATGC | 1 cut(s) | 120 |
| Sse9I | AATT | 2 cut(s) | 27, 480 |
| SsiI | CCGC | 1 cut(s) | 320 |
| SspMI | CTAG | 2 cut(s) | 131, 345 |
| TaaI | ACNGT | 1 cut(s) | 182 |
| TaqI | TCGA | 1 cut(s) | 171 |
| TasI | AATT | 2 cut(s) | 27, 480 |
| TauI | GCSGC | 1 cut(s) | 323 |
| Tru1I | TTAA | 2 cut(s) | 204, 485 |
| Tru9I | TTAA | 2 cut(s) | 204, 485 |
| TscAI | CASTG | 1 cut(s) | 202 |
| TseI | GCWGC | 1 cut(s) | 145 |
| TspRI | CASTG | 1 cut(s) | 202 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 289 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 410 |
| XceI | RCATGY | 1 cut(s) | 120 |
| XmiI | GTMKAC | 1 cut(s) | 394 |
| XspI | CTAG | 2 cut(s) | 131, 345 |