Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 739 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 750 |
| AccBSI | CCGCTC | 2 cut(s) | 195, 806 |
| AccI | GTMKAC | 2 cut(s) | 130, 937 |
| AciI | CCGC | 4 cut(s) | 113, 195, 806, 1017 |
| AcoI | YGGCCR | 1 cut(s) | 49 |
| AcsI | RAATTY | 2 cut(s) | 136, 1027 |
| AfaI | GTAC | 4 cut(s) | 375, 439, 707, 1069 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 715, 750, 910 |
| AflII | CTTAAG | 1 cut(s) | 124 |
| AgsI | TTSAA | 2 cut(s) | 778, 980 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 562 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AluBI | AGCT | 4 cut(s) | 29, 70, 917, 932 |
| AluI | AGCT | 4 cut(s) | 29, 70, 917, 932 |
| Alw21I | GWGCWC | 4 cut(s) | 72, 410, 516, 761 |
| Alw44I | GTGCAC | 1 cut(s) | 406 |
| AoxI | GGCC | 3 cut(s) | 49, 488, 878 |
| ApaLI | GTGCAC | 1 cut(s) | 406 |
| ApeKI | GCWGC | 3 cut(s) | 422, 866, 1004 |
| ApoI | RAATTY | 2 cut(s) | 136, 1027 |
| AspLEI | GCGC | 1 cut(s) | 220 |
| AspS9I | GGNCC | 1 cut(s) | 488 |
| AsuC2I | CCSGG | 1 cut(s) | 842 |
| AsuHPI | GGTGA | 2 cut(s) | 238, 677 |
| AsuII | TTCGAA | 1 cut(s) | 615 |
| BaeGI | GKGCMC | 1 cut(s) | 410 |
| BanI | GGYRCC | 1 cut(s) | 739 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| Bbv12I | GWGCWC | 4 cut(s) | 72, 410, 516, 761 |
| BbvCI | CCTCAGC | 1 cut(s) | 918 |
| BbvI | GCAGC | 3 cut(s) | 409, 853, 991 |
| BccI | CCATC | 4 cut(s) | 244, 622, 717, 785 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 149, 183, 228, 262 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BcnI | CCSGG | 1 cut(s) | 842 |
| BfaI | CTAG | 5 cut(s) | 371, 554, 765, 876, 1080 |
| BfrI | CTTAAG | 1 cut(s) | 124 |
| BisI | GCNGC | 4 cut(s) | 114, 423, 867, 1005 |
| BlsI | GCNGC | 4 cut(s) | 115, 424, 868, 1006 |
| BmcAI | AGTACT | 1 cut(s) | 1069 |
| Bme1390I | CCNGG | 2 cut(s) | 74, 842 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 562 |
| BmgT120I | GGNCC | 1 cut(s) | 488 |
| BmiI | GGNNCC | 1 cut(s) | 741 |
| BmrFI | CCNGG | 2 cut(s) | 74, 842 |
| BmsI | GCATC | 3 cut(s) | 248, 634, 1097 |
| Bpu10I | CCTNAGC | 1 cut(s) | 918 |
| Bpu14I | TTCGAA | 1 cut(s) | 615 |
| BpuMI | CCSGG | 1 cut(s) | 842 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 715, 750, 910 |
| Bse1I | ACTGG | 2 cut(s) | 284, 574 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseGI | GGATG | 5 cut(s) | 709, 796, 814, 850, 1045 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 715, 750, 910 |
| BseMII | CTCAG | 2 cut(s) | 909, 912 |
| BseNI | ACTGG | 2 cut(s) | 284, 574 |
| BseSI | GKGCMC | 1 cut(s) | 410 |
| BseXI | GCAGC | 3 cut(s) | 409, 853, 991 |
| BseYI | CCCAGC | 1 cut(s) | 517 |
| BsgI | GTGCAG | 1 cut(s) | 990 |
| Bsh1285I | CGRYCG | 1 cut(s) | 169 |
| BshFI | GGCC | 3 cut(s) | 51, 490, 880 |
| BshNI | GGYRCC | 1 cut(s) | 739 |
| BsiEI | CGRYCG | 1 cut(s) | 169 |
| BsiHKAI | GWGCWC | 4 cut(s) | 72, 410, 516, 761 |
| BsiSI | CCGG | 1 cut(s) | 841 |
| BslFI | GGGAC | 2 cut(s) | 22, 1084 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 715, 750, 910 |
| BsmFI | GGGAC | 2 cut(s) | 22, 1084 |
| BsnI | GGCC | 3 cut(s) | 51, 490, 880 |
| Bsp119I | TTCGAA | 1 cut(s) | 615 |
| Bsp1286I | GDGCHC | 4 cut(s) | 72, 410, 516, 761 |
| Bsp143I | GATC | 3 cut(s) | 31, 145, 166 |
| BspACI | CCGC | 4 cut(s) | 113, 195, 806, 1017 |
| BspANI | GGCC | 3 cut(s) | 51, 490, 880 |
| BspCNI | CTCAG | 2 cut(s) | 910, 911 |
| BspHI | TCATGA | 1 cut(s) | 94 |
| BspLI | GGNNCC | 1 cut(s) | 741 |
| BspT104I | TTCGAA | 1 cut(s) | 615 |
| BspT107I | GGYRCC | 1 cut(s) | 739 |
| BspTI | CTTAAG | 1 cut(s) | 124 |
| BsrBI | CCGCTC | 2 cut(s) | 195, 806 |
| BsrI | ACTGG | 2 cut(s) | 284, 574 |
| BssMI | GATC | 3 cut(s) | 31, 145, 166 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 657 |
| BstAFI | CTTAAG | 1 cut(s) | 124 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 414 |
| BstBI | TTCGAA | 1 cut(s) | 615 |
| BstC8I | GCNNGC | 1 cut(s) | 738 |
| BstDEI | CTNAG | 2 cut(s) | 898, 918 |
| BstF5I | GGATG | 5 cut(s) | 709, 796, 814, 850, 1045 |
| BstHHI | GCGC | 1 cut(s) | 220 |
| BstKTI | GATC | 3 cut(s) | 34, 148, 169 |
| BstMBI | GATC | 3 cut(s) | 31, 145, 166 |
| BstMCI | CGRYCG | 1 cut(s) | 169 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 280, 414, 803, 872, 929 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstNSI | RCATGY | 2 cut(s) | 429, 893 |
| BstSCI | CCNGG | 2 cut(s) | 72, 840 |
| BstSLI | GKGCMC | 1 cut(s) | 410 |
| BstV1I | GCAGC | 3 cut(s) | 409, 853, 991 |
| BsuRI | GGCC | 3 cut(s) | 51, 490, 880 |
| BtsCI | GGATG | 5 cut(s) | 709, 796, 814, 850, 1045 |
| BtsI | GCAGTG | 1 cut(s) | 761 |
| BtsIMutI | CAGTG | 2 cut(s) | 581, 761 |
| Cac8I | GCNNGC | 1 cut(s) | 738 |
| CciI | TCATGA | 1 cut(s) | 94 |
| CfoI | GCGC | 1 cut(s) | 220 |
| Cfr13I | GGNCC | 1 cut(s) | 488 |
| CseI | GACGC | 1 cut(s) | 671 |
| Csp6I | GTAC | 4 cut(s) | 374, 438, 706, 1068 |
| CviAII | CATG | 9 cut(s) | 95, 328, 418, 426, 537, 592, 745, 856, 890 |
| CviQI | GTAC | 4 cut(s) | 374, 438, 706, 1068 |
| DdeI | CTNAG | 2 cut(s) | 898, 918 |
| DpnI | GATC | 3 cut(s) | 33, 147, 168 |
| DpnII | GATC | 3 cut(s) | 31, 145, 166 |
| DraI | TTTAAA | 2 cut(s) | 451, 501 |
| DriI | GACNNNNNGTC | 1 cut(s) | 562 |
| EaeI | YGGCCR | 1 cut(s) | 49 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 562 |
| Ecl136II | GAGCTC | 1 cut(s) | 70 |
| Eco147I | AGGCCT | 1 cut(s) | 880 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco53kI | GAGCTC | 1 cut(s) | 70 |
| EcoICRI | GAGCTC | 1 cut(s) | 70 |
| EcoRI | GAATTC | 1 cut(s) | 136 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| FaeI | CATG | 9 cut(s) | 98, 331, 421, 429, 540, 595, 748, 859, 893 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FaqI | GGGAC | 2 cut(s) | 22, 1084 |
| FatI | CATG | 9 cut(s) | 94, 327, 417, 425, 536, 591, 744, 855, 889 |
| FauNDI | CATATG | 1 cut(s) | 285 |
| FblI | GTMKAC | 2 cut(s) | 130, 937 |
| Fnu4HI | GCNGC | 4 cut(s) | 114, 423, 867, 1005 |
| FokI | GGATG | 5 cut(s) | 696, 803, 821, 857, 1052 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| Fsp4HI | GCNGC | 4 cut(s) | 114, 423, 867, 1005 |
| FspBI | CTAG | 5 cut(s) | 371, 554, 765, 876, 1080 |
| GlaI | GCGC | 1 cut(s) | 219 |
| GluI | GCNGC | 4 cut(s) | 114, 423, 867, 1005 |
| GsaI | CCCAGC | 1 cut(s) | 521 |
| HaeIII | GGCC | 3 cut(s) | 51, 490, 880 |
| HapII | CCGG | 1 cut(s) | 841 |
| HgaI | GACGC | 1 cut(s) | 671 |
| HhaI | GCGC | 1 cut(s) | 220 |
| Hin1II | CATG | 9 cut(s) | 98, 331, 421, 429, 540, 595, 748, 859, 893 |
| Hin6I | GCGC | 1 cut(s) | 218 |
| HinP1I | GCGC | 1 cut(s) | 218 |
| HincII | GTYRAC | 1 cut(s) | 571 |
| HindII | GTYRAC | 1 cut(s) | 571 |
| HinfI | GANTC | 5 cut(s) | 348, 431, 526, 986, 1085 |
| HpaII | CCGG | 1 cut(s) | 841 |
| HphI | GGTGA | 2 cut(s) | 238, 677 |
| Hpy166II | GTNNAC | 5 cut(s) | 131, 408, 440, 571, 938 |
| Hpy188I | TCNGA | 3 cut(s) | 142, 171, 967 |
| Hpy188III | TCNNGA | 2 cut(s) | 95, 700 |
| Hpy8I | GTNNAC | 5 cut(s) | 131, 408, 440, 571, 938 |
| HpyAV | CCTTC | 2 cut(s) | 376, 658 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 657 |
| HpyCH4IV | ACGT | 2 cut(s) | 410, 542 |
| HpyCH4V | TGCA | 9 cut(s) | 239, 366, 408, 417, 425, 496, 893, 1007, 1110 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 280, 414, 803, 872, 929 |
| HpyF3I | CTNAG | 2 cut(s) | 898, 918 |
| HpySE526I | ACGT | 2 cut(s) | 410, 542 |
| Hsp92II | CATG | 9 cut(s) | 98, 331, 421, 429, 540, 595, 748, 859, 893 |
| HspAI | GCGC | 1 cut(s) | 218 |
| Kzo9I | GATC | 3 cut(s) | 31, 145, 166 |
| LmnI | GCTCC | 3 cut(s) | 67, 75, 794 |
| Lsp1109I | GCAGC | 3 cut(s) | 409, 853, 991 |
| LweI | GCATC | 3 cut(s) | 248, 634, 1097 |
| MaeI | CTAG | 5 cut(s) | 371, 554, 765, 876, 1080 |
| MaeII | ACGT | 2 cut(s) | 410, 542 |
| MaeIII | GTNAC | 3 cut(s) | 197, 275, 683 |
| MalI | GATC | 3 cut(s) | 33, 147, 168 |
| MbiI | CCGCTC | 2 cut(s) | 195, 806 |
| MboI | GATC | 3 cut(s) | 31, 145, 166 |
| MboII | GAAGA | 7 cut(s) | 89, 525, 580, 649, 742, 790, 1036 |
| MhlI | GDGCHC | 4 cut(s) | 72, 410, 516, 761 |
| MluCI | AATT | 2 cut(s) | 136, 1027 |
| MlyI | GAGTC | 2 cut(s) | 520, 980 |
| MmeI | TCCRAC | 2 cut(s) | 525, 676 |
| MnlI | CCTC | 9 cut(s) | 37, 250, 264, 761, 815, 913, 914, 1045, 1113 |
| MseI | TTAA | 8 cut(s) | 125, 189, 318, 342, 450, 500, 1011, 1117 |
| MspCI | CTTAAG | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 841 |
| MspR9I | CCNGG | 2 cut(s) | 74, 842 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 280, 414, 803, 872, 929 |
| NciI | CCSGG | 1 cut(s) | 842 |
| NdeI | CATATG | 1 cut(s) | 285 |
| NdeII | GATC | 3 cut(s) | 31, 145, 166 |
| NlaIII | CATG | 9 cut(s) | 98, 331, 421, 429, 540, 595, 748, 859, 893 |
| NlaIV | GGNNCC | 1 cut(s) | 741 |
| NmeAIII | GCCGAG | 1 cut(s) | 77 |
| NmuCI | GTSAC | 1 cut(s) | 683 |
| NspI | RCATGY | 2 cut(s) | 429, 893 |
| NspV | TTCGAA | 1 cut(s) | 615 |
| PagI | TCATGA | 1 cut(s) | 94 |
| PceI | AGGCCT | 1 cut(s) | 880 |
| PfeI | GAWTC | 3 cut(s) | 348, 431, 1085 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 750 |
| PfoI | TCCNGGA | 2 cut(s) | 72, 840 |
| PkrI | GCNGC | 4 cut(s) | 115, 424, 868, 1006 |
| Ple19I | CGATCG | 1 cut(s) | 169 |
| PleI | GAGTC | 2 cut(s) | 520, 980 |
| PpsI | GAGTC | 2 cut(s) | 520, 980 |
| Psp124BI | GAGCTC | 1 cut(s) | 72 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspFI | CCCAGC | 1 cut(s) | 517 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 741 |
| PspPI | GGNCC | 1 cut(s) | 488 |
| PvuI | CGATCG | 1 cut(s) | 169 |
| RsaI | GTAC | 4 cut(s) | 375, 439, 707, 1069 |
| RsaNI | GTAC | 4 cut(s) | 374, 438, 706, 1068 |
| SacI | GAGCTC | 1 cut(s) | 72 |
| SaqAI | TTAA | 8 cut(s) | 125, 189, 318, 342, 450, 500, 1011, 1117 |
| SatI | GCNGC | 4 cut(s) | 114, 423, 867, 1005 |
| Sau3AI | GATC | 3 cut(s) | 31, 145, 166 |
| Sau96I | GGNCC | 1 cut(s) | 488 |
| ScaI | AGTACT | 1 cut(s) | 1069 |
| SchI | GAGTC | 2 cut(s) | 520, 980 |
| ScrFI | CCNGG | 2 cut(s) | 74, 842 |
| SduI | GDGCHC | 4 cut(s) | 72, 410, 516, 761 |
| SfaNI | GCATC | 3 cut(s) | 248, 634, 1097 |
| SfuI | TTCGAA | 1 cut(s) | 615 |
| SmlI | CTYRAG | 1 cut(s) | 124 |
| SmoI | CTYRAG | 1 cut(s) | 124 |
| Sse9I | AATT | 2 cut(s) | 136, 1027 |
| SseBI | AGGCCT | 1 cut(s) | 880 |
| SsiI | CCGC | 4 cut(s) | 113, 195, 806, 1017 |
| SspMI | CTAG | 5 cut(s) | 371, 554, 765, 876, 1080 |
| SstI | GAGCTC | 1 cut(s) | 72 |
| StuI | AGGCCT | 1 cut(s) | 880 |
| StyD4I | CCNGG | 2 cut(s) | 72, 840 |
| TaaI | ACNGT | 2 cut(s) | 226, 657 |
| TaiI | ACGT | 2 cut(s) | 413, 545 |
| TaqI | TCGA | 4 cut(s) | 248, 615, 802, 1105 |
| TasI | AATT | 2 cut(s) | 136, 1027 |
| TatI | WGTACW | 2 cut(s) | 373, 1067 |
| TauI | GCSGC | 1 cut(s) | 116 |
| TfiI | GAWTC | 3 cut(s) | 348, 431, 1085 |
| Tru1I | TTAA | 8 cut(s) | 125, 189, 318, 342, 450, 500, 1011, 1117 |
| Tru9I | TTAA | 8 cut(s) | 125, 189, 318, 342, 450, 500, 1011, 1117 |
| TscAI | CASTG | 2 cut(s) | 581, 761 |
| TseFI | GTSAC | 1 cut(s) | 683 |
| TseI | GCWGC | 3 cut(s) | 422, 866, 1004 |
| Tsp45I | GTSAC | 1 cut(s) | 683 |
| TspDTI | ATGAA | 7 cut(s) | 111, 200, 316, 525, 580, 761, 941 |
| TspGWI | ACGGA | 1 cut(s) | 148 |
| TspRI | CASTG | 2 cut(s) | 581, 761 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 750 |
| Vha464I | CTTAAG | 1 cut(s) | 124 |
| VneI | GTGCAC | 1 cut(s) | 406 |
| XapI | RAATTY | 2 cut(s) | 136, 1027 |
| XceI | RCATGY | 2 cut(s) | 429, 893 |
| XmiI | GTMKAC | 2 cut(s) | 130, 937 |
| XspI | CTAG | 5 cut(s) | 371, 554, 765, 876, 1080 |
| ZrmI | AGTACT | 1 cut(s) | 1069 |