Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| B_lectin | PF01453 | 75 - 184 | 5.8e-29 | D-mannose binding lectin |
| S_locus_glycop | PF00954 | 219 - 328 | 9.4e-29 | S-locus glycoprotein domain |
| PAN_2 | PF08276 | 367 - 429 | 6.7e-15 | PAN-like domain |
| Pkinase | PF00069 | 522 - 720 | 8.3e-45 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 523 - 788 | 5.8e-46 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1608 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 572 |
| AccIII | TCCGGA | 1 cut(s) | 2074 |
| AciI | CCGC | 1 cut(s) | 2357 |
| AclWI | GGATC | 4 cut(s) | 557, 1176, 1499, 1745 |
| AcsI | RAATTY | 4 cut(s) | 328, 1292, 1354, 1983 |
| AcuI | CTGAAG | 3 cut(s) | 25, 90, 142 |
| AcvI | CACGTG | 1 cut(s) | 2060 |
| AfaI | GTAC | 5 cut(s) | 19, 975, 1074, 1137, 2325 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 572, 1082, 2091, 2214 |
| AflIII | ACRYGT | 2 cut(s) | 908, 2057 |
| AhlI | ACTAGT | 1 cut(s) | 377 |
| AjnI | CCWGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| Alw26I | GTCTC | 3 cut(s) | 130, 999, 2076 |
| AlwI | GGATC | 4 cut(s) | 557, 1176, 1499, 1745 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 389, 1207 |
| Ama87I | CYCGRG | 1 cut(s) | 1580 |
| Aor13HI | TCCGGA | 1 cut(s) | 2074 |
| AoxI | GGCC | 4 cut(s) | 133, 914, 2345, 2506 |
| ApeKI | GCWGC | 6 cut(s) | 291, 389, 930, 1749, 2154, 2407 |
| ApoI | RAATTY | 4 cut(s) | 328, 1292, 1354, 1983 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1052, 1084 |
| AseI | ATTAAT | 2 cut(s) | 636, 2466 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1458 |
| AspS9I | GGNCC | 4 cut(s) | 914, 1011, 1598, 2393 |
| AsuHPI | GGTGA | 5 cut(s) | 455, 488, 1358, 1936, 2279 |
| AsuII | TTCGAA | 1 cut(s) | 144 |
| AsuNHI | GCTAGC | 1 cut(s) | 2486 |
| AvaI | CYCGRG | 1 cut(s) | 1580 |
| AvaII | GGWCC | 3 cut(s) | 1011, 1598, 2393 |
| BbrPI | CACGTG | 1 cut(s) | 2060 |
| BbsI | GAAGAC | 2 cut(s) | 1182, 2238 |
| BbvI | GCAGC | 6 cut(s) | 303, 376, 942, 1736, 2166, 2394 |
| BccI | CCATC | 6 cut(s) | 401, 574, 1100, 1516, 1619, 1911 |
| BciT130I | CCWGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| BciVI | GTATCC | 1 cut(s) | 1801 |
| BclI | TGATCA | 1 cut(s) | 624 |
| BcoDI | GTCTC | 3 cut(s) | 130, 999, 2076 |
| BcuI | ACTAGT | 1 cut(s) | 377 |
| BfmI | CTRYAG | 2 cut(s) | 390, 2119 |
| BfuI | GTATCC | 1 cut(s) | 1801 |
| BglII | AGATCT | 1 cut(s) | 170 |
| BisI | GCNGC | 6 cut(s) | 292, 390, 931, 1750, 2155, 2408 |
| BlsI | GCNGC | 6 cut(s) | 293, 391, 932, 1751, 2156, 2409 |
| Bme1390I | CCNGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| Bme18I | GGWCC | 3 cut(s) | 1011, 1598, 2393 |
| BmeT110I | CYCGRG | 1 cut(s) | 1580 |
| BmgT120I | GGNCC | 4 cut(s) | 914, 1011, 1598, 2393 |
| BmrFI | CCNGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| BmrI | ACTGGG | 1 cut(s) | 17 |
| BmtI | GCTAGC | 1 cut(s) | 2490 |
| BmuI | ACTGGG | 1 cut(s) | 17 |
| BpiI | GAAGAC | 2 cut(s) | 1182, 2238 |
| BpmI | CTGGAG | 2 cut(s) | 326, 676 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1663, 2403 |
| Bpu14I | TTCGAA | 1 cut(s) | 144 |
| Bsa29I | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BsaAI | YACGTR | 2 cut(s) | 218, 2060 |
| BsaBI | GATNNNNATC | 2 cut(s) | 714, 1146 |
| BsaJI | CCNNGG | 2 cut(s) | 270, 2352 |
| BsaWI | WCCGGW | 1 cut(s) | 2074 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 572, 1082, 2091, 2214 |
| Bse118I | RCCGGY | 1 cut(s) | 2168 |
| Bse1I | ACTGG | 4 cut(s) | 12, 863, 1013, 1014 |
| Bse3DI | GCAATG | 2 cut(s) | 301, 1076 |
| Bse8I | GATNNNNATC | 2 cut(s) | 714, 1146 |
| BseAI | TCCGGA | 1 cut(s) | 2074 |
| BseBI | CCWGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| BseCI | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BseDI | CCNNGG | 2 cut(s) | 270, 2352 |
| BseGI | GGATG | 6 cut(s) | 97, 469, 712, 1768, 1969, 2440 |
| BseJI | GATNNNNATC | 2 cut(s) | 714, 1146 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 572, 1082, 2091, 2214 |
| BseMI | GCAATG | 2 cut(s) | 301, 1076 |
| BseMII | CTCAG | 3 cut(s) | 774, 1677, 2448 |
| BseNI | ACTGG | 4 cut(s) | 12, 863, 1013, 1014 |
| BseXI | GCAGC | 6 cut(s) | 303, 376, 942, 1736, 2166, 2394 |
| BshFI | GGCC | 4 cut(s) | 135, 916, 2347, 2508 |
| BshVI | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1580 |
| BsiSI | CCGG | 2 cut(s) | 2075, 2169 |
| BslFI | GGGAC | 2 cut(s) | 126, 1487 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 572, 1082, 2091, 2214 |
| BsmAI | GTCTC | 3 cut(s) | 130, 999, 2076 |
| BsmFI | GGGAC | 2 cut(s) | 126, 1487 |
| BsnI | GGCC | 4 cut(s) | 135, 916, 2347, 2508 |
| BsoBI | CYCGRG | 1 cut(s) | 1580 |
| Bsp119I | TTCGAA | 1 cut(s) | 144 |
| Bsp13I | TCCGGA | 1 cut(s) | 2074 |
| Bsp1407I | TGTACA | 1 cut(s) | 2323 |
| Bsp19I | CCATGG | 1 cut(s) | 2352 |
| BspACI | CCGC | 1 cut(s) | 2357 |
| BspANI | GGCC | 4 cut(s) | 135, 916, 2347, 2508 |
| BspCNI | CTCAG | 3 cut(s) | 775, 1676, 2449 |
| BspDI | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BspEI | TCCGGA | 1 cut(s) | 2074 |
| BspHI | TCATGA | 1 cut(s) | 1906 |
| BspMAI | CTGCAG | 1 cut(s) | 394 |
| BspOI | GCTAGC | 1 cut(s) | 2490 |
| BspPI | GGATC | 4 cut(s) | 557, 1176, 1499, 1745 |
| BspT104I | TTCGAA | 1 cut(s) | 144 |
| BsrDI | GCAATG | 2 cut(s) | 301, 1076 |
| BsrFI | RCCGGY | 1 cut(s) | 2168 |
| BsrGI | TGTACA | 1 cut(s) | 2323 |
| BsrI | ACTGG | 4 cut(s) | 12, 863, 1013, 1014 |
| BssAI | RCCGGY | 1 cut(s) | 2168 |
| BssECI | CCNNGG | 2 cut(s) | 270, 2352 |
| BssT1I | CCWWGG | 2 cut(s) | 270, 2352 |
| Bst2UI | CCWGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| Bst4CI | ACNGT | 2 cut(s) | 60, 1203 |
| Bst6I | CTCTTC | 4 cut(s) | 817, 1485, 1674, 1826 |
| BstAUI | TGTACA | 1 cut(s) | 2323 |
| BstBAI | YACGTR | 2 cut(s) | 218, 2060 |
| BstBI | TTCGAA | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 8 cut(s) | 615, 695, 1333, 1375, 1440, 2005, 2303, 2488 |
| BstDEI | CTNAG | 4 cut(s) | 783, 1663, 2403, 2457 |
| BstDSI | CCRYGG | 1 cut(s) | 2352 |
| BstF5I | GGATG | 6 cut(s) | 97, 469, 712, 1768, 1969, 2440 |
| BstMAI | GTCTC | 3 cut(s) | 130, 999, 2076 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1332, 2311, 2363 |
| BstNI | CCWGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| BstNSI | RCATGY | 2 cut(s) | 697, 912 |
| BstSCI | CCNGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| BstSFI | CTRYAG | 2 cut(s) | 390, 2119 |
| BstV1I | GCAGC | 6 cut(s) | 303, 376, 942, 1736, 2166, 2394 |
| BstV2I | GAAGAC | 2 cut(s) | 1182, 2238 |
| BstX2I | RGATCY | 2 cut(s) | 170, 1168 |
| BstYI | RGATCY | 2 cut(s) | 170, 1168 |
| Bsu15I | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BsuI | GTATCC | 1 cut(s) | 1801 |
| BsuRI | GGCC | 4 cut(s) | 135, 916, 2347, 2508 |
| BsuTUI | ATCGAT | 3 cut(s) | 640, 712, 889 |
| BtgI | CCRYGG | 1 cut(s) | 2352 |
| BtsCI | GGATG | 6 cut(s) | 97, 469, 712, 1768, 1969, 2440 |
| BtsI | GCAGTG | 2 cut(s) | 1845, 2386 |
| BtsIMutI | CAGTG | 4 cut(s) | 1021, 1208, 1845, 2386 |
| Cac8I | GCNNGC | 8 cut(s) | 615, 695, 1333, 1375, 1440, 2005, 2303, 2488 |
| CaiI | CAGNNNCTG | 2 cut(s) | 389, 1207 |
| CciI | TCATGA | 1 cut(s) | 1906 |
| Cfr10I | RCCGGY | 1 cut(s) | 2168 |
| Cfr13I | GGNCC | 4 cut(s) | 914, 1011, 1598, 2393 |
| ClaI | ATCGAT | 3 cut(s) | 640, 712, 889 |
| Csp6I | GTAC | 5 cut(s) | 18, 974, 1073, 1136, 2324 |
| CviAII | CATG | 9 cut(s) | 496, 669, 694, 909, 1741, 1789, 1907, 2214, 2353 |
| CviQI | GTAC | 5 cut(s) | 18, 974, 1073, 1136, 2324 |
| DdeI | CTNAG | 4 cut(s) | 783, 1663, 2403, 2457 |
| DraI | TTTAAA | 1 cut(s) | 730 |
| Eam1104I | CTCTTC | 4 cut(s) | 817, 1485, 1674, 1826 |
| EarI | CTCTTC | 4 cut(s) | 817, 1485, 1674, 1826 |
| EciI | GGCGGA | 1 cut(s) | 2372 |
| Eco130I | CCWWGG | 2 cut(s) | 270, 2352 |
| Eco32I | GATATC | 1 cut(s) | 716 |
| Eco47I | GGWCC | 3 cut(s) | 1011, 1598, 2393 |
| Eco57I | CTGAAG | 3 cut(s) | 25, 90, 142 |
| Eco72I | CACGTG | 1 cut(s) | 2060 |
| Eco88I | CYCGRG | 1 cut(s) | 1580 |
| EcoRI | GAATTC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| EcoRV | GATATC | 1 cut(s) | 716 |
| EcoT14I | CCWWGG | 2 cut(s) | 270, 2352 |
| EcoT22I | ATGCAT | 1 cut(s) | 2215 |
| ErhI | CCWWGG | 2 cut(s) | 270, 2352 |
| FaeI | CATG | 9 cut(s) | 499, 672, 697, 912, 1744, 1792, 1910, 2217, 2356 |
| FaqI | GGGAC | 2 cut(s) | 126, 1487 |
| FatI | CATG | 9 cut(s) | 495, 668, 693, 908, 1740, 1788, 1906, 2213, 2352 |
| FbaI | TGATCA | 1 cut(s) | 624 |
| Fnu4HI | GCNGC | 6 cut(s) | 292, 390, 931, 1750, 2155, 2408 |
| FokI | GGATG | 6 cut(s) | 84, 456, 719, 1775, 1976, 2427 |
| Fsp4HI | GCNGC | 6 cut(s) | 292, 390, 931, 1750, 2155, 2408 |
| GluI | GCNGC | 6 cut(s) | 292, 390, 931, 1750, 2155, 2408 |
| GsuI | CTGGAG | 2 cut(s) | 326, 676 |
| HaeIII | GGCC | 4 cut(s) | 135, 916, 2347, 2508 |
| HapII | CCGG | 2 cut(s) | 2075, 2169 |
| Hin1II | CATG | 9 cut(s) | 499, 672, 697, 912, 1744, 1792, 1910, 2217, 2356 |
| HincII | GTYRAC | 1 cut(s) | 342 |
| HindII | GTYRAC | 1 cut(s) | 342 |
| HindIII | AAGCTT | 3 cut(s) | 529, 830, 1801 |
| HinfI | GANTC | 9 cut(s) | 301, 446, 507, 886, 941, 1459, 1910, 1975, 2270 |
| HpaII | CCGG | 2 cut(s) | 2075, 2169 |
| HphI | GGTGA | 5 cut(s) | 455, 488, 1358, 1936, 2279 |
| Hpy166II | GTNNAC | 4 cut(s) | 342, 1427, 2324, 2396 |
| Hpy8I | GTNNAC | 4 cut(s) | 342, 1427, 2324, 2396 |
| HpyAV | CCTTC | 9 cut(s) | 102, 591, 661, 1343, 1624, 1915, 1936, 2009, 2498 |
| HpyCH4III | ACNGT | 2 cut(s) | 60, 1203 |
| HpyCH4IV | ACGT | 2 cut(s) | 217, 2059 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1332, 2311, 2363 |
| HpyF3I | CTNAG | 4 cut(s) | 783, 1663, 2403, 2457 |
| HpySE526I | ACGT | 2 cut(s) | 217, 2059 |
| Hsp92II | CATG | 9 cut(s) | 499, 672, 697, 912, 1744, 1792, 1910, 2217, 2356 |
| Kpn2I | TCCGGA | 1 cut(s) | 2074 |
| Ksp22I | TGATCA | 1 cut(s) | 624 |
| LmnI | GCTCC | 3 cut(s) | 307, 437, 996 |
| Lsp1109I | GCAGC | 6 cut(s) | 303, 376, 942, 1736, 2166, 2394 |
| MaeII | ACGT | 2 cut(s) | 217, 2059 |
| MaeIII | GTNAC | 8 cut(s) | 54, 176, 476, 861, 893, 981, 1046, 1770 |
| MfeI | CAATTG | 1 cut(s) | 620 |
| MflI | RGATCY | 2 cut(s) | 170, 1168 |
| MlyI | GAGTC | 1 cut(s) | 310 |
| MmeI | TCCRAC | 2 cut(s) | 1487, 2032 |
| Mph1103I | ATGCAT | 1 cut(s) | 2215 |
| MroI | TCCGGA | 1 cut(s) | 2074 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1458 |
| MslI | CAYNNNNRTG | 3 cut(s) | 474, 692, 2495 |
| MspI | CCGG | 2 cut(s) | 2075, 2169 |
| MspR9I | CCNGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| MunI | CAATTG | 1 cut(s) | 620 |
| MvaI | CCWGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1332, 2311, 2363 |
| NcoI | CCATGG | 1 cut(s) | 2352 |
| NheI | GCTAGC | 1 cut(s) | 2486 |
| NlaIII | CATG | 9 cut(s) | 499, 672, 697, 912, 1744, 1792, 1910, 2217, 2356 |
| NmuCI | GTSAC | 6 cut(s) | 54, 476, 861, 893, 981, 1046 |
| NsiI | ATGCAT | 1 cut(s) | 2215 |
| NspI | RCATGY | 2 cut(s) | 697, 912 |
| NspV | TTCGAA | 1 cut(s) | 144 |
| PaeI | GCATGC | 1 cut(s) | 697 |
| PagI | TCATGA | 1 cut(s) | 1906 |
| PciI | ACATGT | 1 cut(s) | 908 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1458 |
| PfeI | GAWTC | 8 cut(s) | 446, 507, 886, 941, 1459, 1910, 1975, 2270 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 572 |
| PkrI | GCNGC | 6 cut(s) | 293, 391, 932, 1751, 2156, 2409 |
| PleI | GAGTC | 1 cut(s) | 309 |
| PmaCI | CACGTG | 1 cut(s) | 2060 |
| PmlI | CACGTG | 1 cut(s) | 2060 |
| PpsI | GAGTC | 1 cut(s) | 309 |
| Ppu21I | YACGTR | 2 cut(s) | 218, 2060 |
| PscI | ACATGT | 1 cut(s) | 908 |
| PshBI | ATTAAT | 2 cut(s) | 636, 2466 |
| PsiI | TTATAA | 1 cut(s) | 1608 |
| Psp6I | CCWGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| PspCI | CACGTG | 1 cut(s) | 2060 |
| PspGI | CCWGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| PspPI | GGNCC | 4 cut(s) | 914, 1011, 1598, 2393 |
| PstI | CTGCAG | 1 cut(s) | 394 |
| PstNI | CAGNNNCTG | 2 cut(s) | 389, 1207 |
| PsuI | RGATCY | 2 cut(s) | 170, 1168 |
| RsaI | GTAC | 5 cut(s) | 19, 975, 1074, 1137, 2325 |
| RsaNI | GTAC | 5 cut(s) | 18, 974, 1073, 1136, 2324 |
| RseI | CAYNNNNRTG | 3 cut(s) | 474, 692, 2495 |
| SatI | GCNGC | 6 cut(s) | 292, 390, 931, 1750, 2155, 2408 |
| Sau96I | GGNCC | 4 cut(s) | 914, 1011, 1598, 2393 |
| SchI | GAGTC | 1 cut(s) | 310 |
| ScrFI | CCNGG | 5 cut(s) | 132, 474, 547, 989, 1226 |
| SfcI | CTRYAG | 2 cut(s) | 390, 2119 |
| SfuI | TTCGAA | 1 cut(s) | 144 |
| SinI | GGWCC | 3 cut(s) | 1011, 1598, 2393 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 474, 692, 2495 |
| SpeI | ACTAGT | 1 cut(s) | 377 |
| SphI | GCATGC | 1 cut(s) | 697 |
| SsiI | CCGC | 1 cut(s) | 2357 |
| SspI | AATATT | 4 cut(s) | 141, 1249, 1867, 2464 |
| StyD4I | CCNGG | 5 cut(s) | 130, 472, 545, 987, 1224 |
| StyI | CCWWGG | 2 cut(s) | 270, 2352 |
| TaaI | ACNGT | 2 cut(s) | 60, 1203 |
| TaiI | ACGT | 2 cut(s) | 220, 2062 |
| TaqI | TCGA | 9 cut(s) | 108, 144, 510, 640, 712, 889, 1483, 1821, 2446 |
| TatI | WGTACW | 1 cut(s) | 2323 |
| TfiI | GAWTC | 8 cut(s) | 446, 507, 886, 941, 1459, 1910, 1975, 2270 |
| TscAI | CASTG | 4 cut(s) | 1021, 1208, 1845, 2386 |
| TseFI | GTSAC | 6 cut(s) | 54, 476, 861, 893, 981, 1046 |
| TseI | GCWGC | 6 cut(s) | 291, 389, 930, 1749, 2154, 2407 |
| Tsp45I | GTSAC | 6 cut(s) | 54, 476, 861, 893, 981, 1046 |
| TspRI | CASTG | 4 cut(s) | 1021, 1208, 1845, 2386 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 572 |
| VpaK11BI | GGWCC | 3 cut(s) | 1011, 1598, 2393 |
| VspI | ATTAAT | 2 cut(s) | 636, 2466 |
| XapI | RAATTY | 4 cut(s) | 328, 1292, 1354, 1983 |
| XceI | RCATGY | 2 cut(s) | 697, 912 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1458 |
| Zsp2I | ATGCAT | 1 cut(s) | 2215 |