ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 262 - 383 | 8.2e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 758 |
| Acc65I | GGTACC | 1 cut(s) | 64 |
| AccB1I | GGYRCC | 2 cut(s) | 64, 76 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 101 |
| AccBSI | CCGCTC | 1 cut(s) | 74 |
| AccIII | TCCGGA | 1 cut(s) | 901 |
| AciI | CCGC | 2 cut(s) | 74, 680 |
| AclWI | GGATC | 2 cut(s) | 50, 260 |
| AcsI | RAATTY | 3 cut(s) | 353, 365, 526 |
| AcuI | CTGAAG | 1 cut(s) | 1061 |
| AcyI | GRCGYC | 1 cut(s) | 77 |
| AfaI | GTAC | 5 cut(s) | 66, 93, 400, 492, 698 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 101, 767, 819 |
| AgsI | TTSAA | 2 cut(s) | 142, 431 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 743 |
| AjnI | CCWGG | 1 cut(s) | 384 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 152, 184, 452, 484 |
| AluBI | AGCT | 7 cut(s) | 523, 566, 720, 923, 1015, 1145, 1149 |
| AluI | AGCT | 7 cut(s) | 523, 566, 720, 923, 1015, 1145, 1149 |
| Alw21I | GWGCWC | 1 cut(s) | 722 |
| Alw26I | GTCTC | 3 cut(s) | 898, 943, 974 |
| AlwI | GGATC | 2 cut(s) | 50, 260 |
| Aor13HI | TCCGGA | 1 cut(s) | 901 |
| AoxI | GGCC | 3 cut(s) | 370, 933, 958 |
| ApeKI | GCWGC | 2 cut(s) | 520, 952 |
| ApoI | RAATTY | 3 cut(s) | 353, 365, 526 |
| Asp718I | GGTACC | 1 cut(s) | 64 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 3 cut(s) | 250, 667, 694 |
| AsuNHI | GCTAGC | 1 cut(s) | 1145 |
| BanI | GGYRCC | 2 cut(s) | 64, 76 |
| BanII | GRGCYC | 2 cut(s) | 16, 722 |
| Bbv12I | GWGCWC | 1 cut(s) | 722 |
| BbvI | GCAGC | 2 cut(s) | 532, 964 |
| BccI | CCATC | 3 cut(s) | 26, 785, 1080 |
| BceAI | ACGGC | 1 cut(s) | 920 |
| BciT130I | CCWGG | 1 cut(s) | 386 |
| BcoDI | GTCTC | 3 cut(s) | 898, 943, 974 |
| BfaI | CTAG | 3 cut(s) | 69, 1146, 1150 |
| BfoI | RGCGCY | 1 cut(s) | 80 |
| BfuAI | ACCTGC | 1 cut(s) | 758 |
| BisI | GCNGC | 3 cut(s) | 75, 521, 953 |
| BlsI | GCNGC | 3 cut(s) | 76, 522, 954 |
| Bme1390I | CCNGG | 1 cut(s) | 386 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 743 |
| BmiI | GGNNCC | 2 cut(s) | 66, 78 |
| BmrFI | CCNGG | 1 cut(s) | 386 |
| BmsI | GCATC | 4 cut(s) | 184, 336, 344, 615 |
| BmtI | GCTAGC | 1 cut(s) | 1149 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 923, 955 |
| BpmI | CTGGAG | 3 cut(s) | 631, 671, 864 |
| BpuEI | CTTGAG | 1 cut(s) | 244 |
| BsaHI | GRCGYC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 749 |
| BsaWI | WCCGGW | 1 cut(s) | 901 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 101, 767, 819 |
| Bse1I | ACTGG | 3 cut(s) | 95, 813, 881 |
| BseAI | TCCGGA | 1 cut(s) | 901 |
| BseBI | CCWGG | 1 cut(s) | 386 |
| BseDI | CCNNGG | 2 cut(s) | 59, 749 |
| BseGI | GGATG | 2 cut(s) | 424, 478 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 101, 767, 819 |
| BseMII | CTCAG | 1 cut(s) | 1007 |
| BseNI | ACTGG | 3 cut(s) | 95, 813, 881 |
| BseRI | GAGGAG | 2 cut(s) | 329, 332 |
| BseXI | GCAGC | 2 cut(s) | 532, 964 |
| BseYI | CCCAGC | 1 cut(s) | 923 |
| BsgI | GTGCAG | 3 cut(s) | 347, 692, 786 |
| BshFI | GGCC | 3 cut(s) | 372, 935, 960 |
| BshNI | GGYRCC | 2 cut(s) | 64, 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 722 |
| BsiSI | CCGG | 1 cut(s) | 902 |
| BslFI | GGGAC | 1 cut(s) | 731 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 101, 767, 819 |
| BsmAI | GTCTC | 3 cut(s) | 898, 943, 974 |
| BsmBI | CGTCTC | 2 cut(s) | 943, 974 |
| BsmFI | GGGAC | 1 cut(s) | 731 |
| BsnI | GGCC | 3 cut(s) | 372, 935, 960 |
| Bsp1286I | GDGCHC | 2 cut(s) | 16, 722 |
| Bsp13I | TCCGGA | 1 cut(s) | 901 |
| Bsp143I | GATC | 3 cut(s) | 55, 244, 265 |
| Bsp19I | CCATGG | 1 cut(s) | 59 |
| BspACI | CCGC | 2 cut(s) | 74, 680 |
| BspANI | GGCC | 3 cut(s) | 372, 935, 960 |
| BspCNI | CTCAG | 1 cut(s) | 1008 |
| BspEI | TCCGGA | 1 cut(s) | 901 |
| BspLI | GGNNCC | 2 cut(s) | 66, 78 |
| BspMI | ACCTGC | 1 cut(s) | 758 |
| BspOI | GCTAGC | 1 cut(s) | 1149 |
| BspPI | GGATC | 2 cut(s) | 50, 260 |
| BspT107I | GGYRCC | 2 cut(s) | 64, 76 |
| BsrBI | CCGCTC | 1 cut(s) | 74 |
| BsrI | ACTGG | 3 cut(s) | 95, 813, 881 |
| BssECI | CCNNGG | 2 cut(s) | 59, 749 |
| BssMI | GATC | 3 cut(s) | 55, 244, 265 |
| BssNI | GRCGYC | 1 cut(s) | 77 |
| BssT1I | CCWWGG | 2 cut(s) | 59, 749 |
| Bst2UI | CCWGG | 1 cut(s) | 386 |
| Bst4CI | ACNGT | 1 cut(s) | 860 |
| Bst6I | CTCTTC | 1 cut(s) | 901 |
| BstACI | GRCGYC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 1 cut(s) | 1147 |
| BstDEI | CTNAG | 1 cut(s) | 1016 |
| BstDSI | CCRYGG | 1 cut(s) | 59 |
| BstF5I | GGATG | 2 cut(s) | 424, 478 |
| BstH2I | RGCGCY | 1 cut(s) | 80 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstKTI | GATC | 3 cut(s) | 58, 247, 268 |
| BstMAI | GTCTC | 3 cut(s) | 898, 943, 974 |
| BstMBI | GATC | 3 cut(s) | 55, 244, 265 |
| BstNI | CCWGG | 1 cut(s) | 386 |
| BstNSI | RCATGY | 2 cut(s) | 26, 393 |
| BstSCI | CCNGG | 1 cut(s) | 384 |
| BstV1I | GCAGC | 2 cut(s) | 532, 964 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1129 |
| BsuRI | GGCC | 3 cut(s) | 372, 935, 960 |
| BtgI | CCRYGG | 1 cut(s) | 59 |
| BtsCI | GGATG | 2 cut(s) | 424, 478 |
| BveI | ACCTGC | 1 cut(s) | 758 |
| Cac8I | GCNNGC | 1 cut(s) | 1147 |
| CfoI | GCGC | 1 cut(s) | 79 |
| Csp6I | GTAC | 5 cut(s) | 65, 92, 399, 491, 697 |
| CviAII | CATG | 7 cut(s) | 23, 60, 101, 390, 662, 1004, 1106 |
| CviQI | GTAC | 5 cut(s) | 65, 92, 399, 491, 697 |
| DdeI | CTNAG | 1 cut(s) | 1016 |
| DinI | GGCGCC | 1 cut(s) | 78 |
| DpnI | GATC | 3 cut(s) | 57, 246, 267 |
| DpnII | GATC | 3 cut(s) | 55, 244, 265 |
| DriI | GACNNNNNGTC | 1 cut(s) | 743 |
| Eam1104I | CTCTTC | 1 cut(s) | 901 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 743 |
| EarI | CTCTTC | 1 cut(s) | 901 |
| Ecl136II | GAGCTC | 1 cut(s) | 720 |
| Eco130I | CCWWGG | 2 cut(s) | 59, 749 |
| Eco147I | AGGCCT | 1 cut(s) | 960 |
| Eco24I | GRGCYC | 2 cut(s) | 16, 722 |
| Eco53kI | GAGCTC | 1 cut(s) | 720 |
| Eco57I | CTGAAG | 1 cut(s) | 1061 |
| EcoICRI | GAGCTC | 1 cut(s) | 720 |
| EcoRI | GAATTC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 2 cut(s) | 59, 749 |
| EcoT38I | GRGCYC | 2 cut(s) | 16, 722 |
| EgeI | GGCGCC | 1 cut(s) | 78 |
| EheI | GGCGCC | 1 cut(s) | 78 |
| ErhI | CCWWGG | 2 cut(s) | 59, 749 |
| Esp3I | CGTCTC | 2 cut(s) | 943, 974 |
| FaeI | CATG | 7 cut(s) | 26, 63, 104, 393, 665, 1007, 1109 |
| FaqI | GGGAC | 1 cut(s) | 731 |
| FatI | CATG | 7 cut(s) | 22, 59, 100, 389, 661, 1003, 1105 |
| FauNDI | CATATG | 1 cut(s) | 454 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 521, 953 |
| FokI | GGATG | 2 cut(s) | 431, 485 |
| FriOI | GRGCYC | 2 cut(s) | 16, 722 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 521, 953 |
| FspBI | CTAG | 3 cut(s) | 69, 1146, 1150 |
| GlaI | GCGC | 1 cut(s) | 78 |
| GluI | GCNGC | 3 cut(s) | 75, 521, 953 |
| GsaI | CCCAGC | 1 cut(s) | 927 |
| GsuI | CTGGAG | 3 cut(s) | 631, 671, 864 |
| HaeII | RGCGCY | 1 cut(s) | 80 |
| HaeIII | GGCC | 3 cut(s) | 372, 935, 960 |
| HapII | CCGG | 1 cut(s) | 902 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin1I | GRCGYC | 1 cut(s) | 77 |
| Hin1II | CATG | 7 cut(s) | 26, 63, 104, 393, 665, 1007, 1109 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HinfI | GANTC | 5 cut(s) | 303, 646, 658, 986, 1020 |
| HpaII | CCGG | 1 cut(s) | 902 |
| HphI | GGTGA | 3 cut(s) | 250, 667, 694 |
| Hpy188I | TCNGA | 2 cut(s) | 55, 762 |
| Hpy188III | TCNNGA | 6 cut(s) | 289, 358, 610, 650, 692, 902 |
| HpyAV | CCTTC | 4 cut(s) | 143, 454, 1048, 1078 |
| HpyCH4III | ACNGT | 1 cut(s) | 860 |
| HpyF3I | CTNAG | 1 cut(s) | 1016 |
| Hsp92I | GRCGYC | 1 cut(s) | 77 |
| Hsp92II | CATG | 7 cut(s) | 26, 63, 104, 393, 665, 1007, 1109 |
| HspAI | GCGC | 1 cut(s) | 77 |
| KasI | GGCGCC | 1 cut(s) | 76 |
| Kpn2I | TCCGGA | 1 cut(s) | 901 |
| KpnI | GGTACC | 1 cut(s) | 68 |
| Kzo9I | GATC | 3 cut(s) | 55, 244, 265 |
| LmnI | GCTCC | 2 cut(s) | 571, 883 |
| Lsp1109I | GCAGC | 2 cut(s) | 532, 964 |
| LweI | GCATC | 4 cut(s) | 184, 336, 344, 615 |
| MaeI | CTAG | 3 cut(s) | 69, 1146, 1150 |
| MaeIII | GTNAC | 2 cut(s) | 883, 970 |
| MalI | GATC | 3 cut(s) | 57, 246, 267 |
| MbiI | CCGCTC | 1 cut(s) | 74 |
| MboI | GATC | 3 cut(s) | 55, 244, 265 |
| MboII | GAAGA | 3 cut(s) | 373, 888, 1067 |
| MfeI | CAATTG | 2 cut(s) | 426, 942 |
| MhlI | GDGCHC | 2 cut(s) | 16, 722 |
| MluCI | AATT | 8 cut(s) | 133, 353, 365, 426, 526, 559, 825, 942 |
| Mly113I | GGCGCC | 1 cut(s) | 77 |
| MlyI | GAGTC | 3 cut(s) | 297, 655, 1029 |
| MmeI | TCCRAC | 2 cut(s) | 89, 450 |
| MroI | TCCGGA | 1 cut(s) | 901 |
| MseI | TTAA | 3 cut(s) | 308, 777, 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 192 |
| MspI | CCGG | 1 cut(s) | 902 |
| MspR9I | CCNGG | 1 cut(s) | 386 |
| MunI | CAATTG | 2 cut(s) | 426, 942 |
| MvaI | CCWGG | 1 cut(s) | 386 |
| NarI | GGCGCC | 1 cut(s) | 77 |
| NcoI | CCATGG | 1 cut(s) | 59 |
| NdeI | CATATG | 1 cut(s) | 454 |
| NdeII | GATC | 3 cut(s) | 55, 244, 265 |
| NheI | GCTAGC | 1 cut(s) | 1145 |
| NlaIII | CATG | 7 cut(s) | 26, 63, 104, 393, 665, 1007, 1109 |
| NlaIV | GGNNCC | 2 cut(s) | 66, 78 |
| NspI | RCATGY | 2 cut(s) | 26, 393 |
| PceI | AGGCCT | 1 cut(s) | 960 |
| PfeI | GAWTC | 2 cut(s) | 658, 986 |
| PflFI | GACNNNGTC | 1 cut(s) | 447 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 101 |
| PkrI | GCNGC | 3 cut(s) | 76, 522, 954 |
| PleI | GAGTC | 3 cut(s) | 297, 654, 1028 |
| PluTI | GGCGCC | 1 cut(s) | 80 |
| PpsI | GAGTC | 3 cut(s) | 297, 654, 1028 |
| Psp124BI | GAGCTC | 1 cut(s) | 722 |
| Psp6I | CCWGG | 1 cut(s) | 384 |
| PspFI | CCCAGC | 1 cut(s) | 923 |
| PspGI | CCWGG | 1 cut(s) | 384 |
| PspN4I | GGNNCC | 2 cut(s) | 66, 78 |
| PsyI | GACNNNGTC | 1 cut(s) | 447 |
| RsaI | GTAC | 5 cut(s) | 66, 93, 400, 492, 698 |
| RsaNI | GTAC | 5 cut(s) | 65, 92, 399, 491, 697 |
| RseI | CAYNNNNRTG | 1 cut(s) | 192 |
| SacI | GAGCTC | 1 cut(s) | 722 |
| SaqAI | TTAA | 3 cut(s) | 308, 777, 783 |
| SatI | GCNGC | 3 cut(s) | 75, 521, 953 |
| Sau3AI | GATC | 3 cut(s) | 55, 244, 265 |
| SchI | GAGTC | 3 cut(s) | 297, 655, 1029 |
| ScrFI | CCNGG | 1 cut(s) | 386 |
| SduI | GDGCHC | 2 cut(s) | 16, 722 |
| SfaNI | GCATC | 4 cut(s) | 184, 336, 344, 615 |
| SfoI | GGCGCC | 1 cut(s) | 78 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 192 |
| SmlI | CTYRAG | 1 cut(s) | 223 |
| SmoI | CTYRAG | 1 cut(s) | 223 |
| Sse9I | AATT | 8 cut(s) | 133, 353, 365, 426, 526, 559, 825, 942 |
| SseBI | AGGCCT | 1 cut(s) | 960 |
| SsiI | CCGC | 2 cut(s) | 74, 680 |
| SspDI | GGCGCC | 1 cut(s) | 76 |
| SspI | AATATT | 2 cut(s) | 43, 381 |
| SspMI | CTAG | 3 cut(s) | 69, 1146, 1150 |
| SstI | GAGCTC | 1 cut(s) | 722 |
| StuI | AGGCCT | 1 cut(s) | 960 |
| StyD4I | CCNGG | 1 cut(s) | 384 |
| StyI | CCWWGG | 2 cut(s) | 59, 749 |
| TaaI | ACNGT | 1 cut(s) | 860 |
| TaqII | GACCGA | 1 cut(s) | 274 |
| TasI | AATT | 8 cut(s) | 133, 353, 365, 426, 526, 559, 825, 942 |
| TatI | WGTACW | 1 cut(s) | 398 |
| TauI | GCSGC | 1 cut(s) | 77 |
| TfiI | GAWTC | 2 cut(s) | 658, 986 |
| Tru1I | TTAA | 3 cut(s) | 308, 777, 783 |
| Tru9I | TTAA | 3 cut(s) | 308, 777, 783 |
| TseI | GCWGC | 2 cut(s) | 520, 952 |
| TspDTI | ATGAA | 6 cut(s) | 89, 162, 435, 791, 992, 1030 |
| TspGWI | ACGGA | 3 cut(s) | 192, 830, 998 |
| Tth111I | GACNNNGTC | 1 cut(s) | 447 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 101 |
| XapI | RAATTY | 3 cut(s) | 353, 365, 526 |
| XceI | RCATGY | 2 cut(s) | 26, 393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 707 |
| XspI | CTAG | 3 cut(s) | 69, 1146, 1150 |