ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF702 | PF05142 | 5 - 152 | 2.2e-49 | Domain of unknown function (DUF702) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 99 |
| AclWI | GGATC | 3 cut(s) | 13, 384, 390 |
| AcoI | YGGCCR | 1 cut(s) | 418 |
| AcsI | RAATTY | 1 cut(s) | 335 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfaI | GTAC | 1 cut(s) | 59 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 613 |
| AgsI | TTSAA | 1 cut(s) | 573 |
| AjiI | CACGTC | 1 cut(s) | 112 |
| AluBI | AGCT | 2 cut(s) | 244, 357 |
| AluI | AGCT | 2 cut(s) | 244, 357 |
| Alw21I | GWGCWC | 1 cut(s) | 359 |
| AlwI | GGATC | 3 cut(s) | 13, 384, 390 |
| AoxI | GGCC | 2 cut(s) | 418, 451 |
| ApeKI | GCWGC | 3 cut(s) | 160, 163, 494 |
| ApoI | RAATTY | 1 cut(s) | 335 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| AspS9I | GGNCC | 2 cut(s) | 452, 604 |
| AsuHPI | GGTGA | 2 cut(s) | 173, 477 |
| AvaII | GGWCC | 1 cut(s) | 604 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanI | GGYRCC | 1 cut(s) | 99 |
| BanII | GRGCYC | 1 cut(s) | 359 |
| BbsI | GAAGAC | 2 cut(s) | 30, 586 |
| Bbv12I | GWGCWC | 1 cut(s) | 359 |
| BbvI | GCAGC | 3 cut(s) | 172, 175, 506 |
| BclI | TGATCA | 3 cut(s) | 178, 208, 445 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BfmI | CTRYAG | 2 cut(s) | 492, 558 |
| BisI | GCNGC | 3 cut(s) | 161, 164, 495 |
| BlsI | GCNGC | 3 cut(s) | 162, 165, 496 |
| Bme18I | GGWCC | 1 cut(s) | 604 |
| BmgBI | CACGTC | 1 cut(s) | 112 |
| BmgT120I | GGNCC | 2 cut(s) | 452, 604 |
| BmiI | GGNNCC | 2 cut(s) | 101, 129 |
| BmsI | GCATC | 1 cut(s) | 56 |
| BpiI | GAAGAC | 2 cut(s) | 30, 586 |
| BsaBI | GATNNNNATC | 2 cut(s) | 288, 381 |
| BsaJI | CCNNGG | 2 cut(s) | 327, 360 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 41, 71 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 613 |
| Bse8I | GATNNNNATC | 2 cut(s) | 288, 381 |
| BseDI | CCNNGG | 2 cut(s) | 327, 360 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseJI | GATNNNNATC | 2 cut(s) | 288, 381 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 613 |
| BseXI | GCAGC | 3 cut(s) | 172, 175, 506 |
| BsgI | GTGCAG | 1 cut(s) | 294 |
| BshFI | GGCC | 2 cut(s) | 420, 453 |
| BshNI | GGYRCC | 1 cut(s) | 99 |
| BsiHKAI | GWGCWC | 1 cut(s) | 359 |
| BsiSI | CCGG | 1 cut(s) | 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 613 |
| BsmI | GAATGC | 1 cut(s) | 435 |
| BsnI | GGCC | 2 cut(s) | 420, 453 |
| Bsp1286I | GDGCHC | 1 cut(s) | 359 |
| Bsp1407I | TGTACA | 1 cut(s) | 57 |
| Bsp143I | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| Bsp19I | CCATGG | 2 cut(s) | 327, 360 |
| BspANI | GGCC | 2 cut(s) | 420, 453 |
| BspHI | TCATGA | 1 cut(s) | 154 |
| BspLI | GGNNCC | 2 cut(s) | 101, 129 |
| BspMAI | CTGCAG | 2 cut(s) | 496, 562 |
| BspPI | GGATC | 3 cut(s) | 13, 384, 390 |
| BspT107I | GGYRCC | 1 cut(s) | 99 |
| BsrGI | TGTACA | 1 cut(s) | 57 |
| BssECI | CCNNGG | 2 cut(s) | 327, 360 |
| BssMI | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| BssT1I | CCWWGG | 2 cut(s) | 327, 360 |
| Bst4CI | ACNGT | 1 cut(s) | 29 |
| Bst6I | CTCTTC | 1 cut(s) | 268 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 566 |
| BstAUI | TGTACA | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 2 cut(s) | 390, 558 |
| BstDEI | CTNAG | 1 cut(s) | 245 |
| BstDSI | CCRYGG | 2 cut(s) | 327, 360 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 611 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstKTI | GATC | 9 cut(s) | 8, 181, 211, 286, 292, 379, 385, 448, 502 |
| BstMBI | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 566 |
| BstSFI | CTRYAG | 2 cut(s) | 492, 558 |
| BstV1I | GCAGC | 3 cut(s) | 172, 175, 506 |
| BstV2I | GAAGAC | 2 cut(s) | 30, 586 |
| BstX2I | RGATCY | 1 cut(s) | 376 |
| BstYI | RGATCY | 1 cut(s) | 376 |
| BsuRI | GGCC | 2 cut(s) | 420, 453 |
| BtgI | CCRYGG | 2 cut(s) | 327, 360 |
| BtrI | CACGTC | 1 cut(s) | 112 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| Cac8I | GCNNGC | 2 cut(s) | 390, 558 |
| CciI | TCATGA | 1 cut(s) | 154 |
| Cfr13I | GGNCC | 2 cut(s) | 452, 604 |
| Csp6I | GTAC | 1 cut(s) | 58 |
| CviAII | CATG | 7 cut(s) | 61, 155, 270, 328, 361, 422, 553 |
| CviJI | RGCY | 8 cut(s) | 147, 244, 280, 302, 314, 357, 420, 453 |
| CviKI_1 | RGCY | 8 cut(s) | 147, 244, 280, 302, 314, 357, 420, 453 |
| CviQI | GTAC | 1 cut(s) | 58 |
| DdeI | CTNAG | 1 cut(s) | 245 |
| DpnI | GATC | 9 cut(s) | 7, 180, 210, 285, 291, 378, 384, 447, 501 |
| DpnII | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| EaeI | YGGCCR | 1 cut(s) | 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 268 |
| EarI | CTCTTC | 1 cut(s) | 268 |
| Ecl136II | GAGCTC | 1 cut(s) | 357 |
| Eco130I | CCWWGG | 2 cut(s) | 327, 360 |
| Eco24I | GRGCYC | 1 cut(s) | 359 |
| Eco47I | GGWCC | 1 cut(s) | 604 |
| Eco53kI | GAGCTC | 1 cut(s) | 357 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| EcoICRI | GAGCTC | 1 cut(s) | 357 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 611 |
| EcoO109I | RGGNCCY | 2 cut(s) | 452, 604 |
| EcoT14I | CCWWGG | 2 cut(s) | 327, 360 |
| EcoT38I | GRGCYC | 1 cut(s) | 359 |
| ErhI | CCWWGG | 2 cut(s) | 327, 360 |
| FaeI | CATG | 7 cut(s) | 64, 158, 273, 331, 364, 425, 556 |
| FatI | CATG | 7 cut(s) | 60, 154, 269, 327, 360, 421, 552 |
| FbaI | TGATCA | 3 cut(s) | 178, 208, 445 |
| Fnu4HI | GCNGC | 3 cut(s) | 161, 164, 495 |
| FokI | GGATG | 1 cut(s) | 498 |
| FriOI | GRGCYC | 1 cut(s) | 359 |
| Fsp4HI | GCNGC | 3 cut(s) | 161, 164, 495 |
| FspBI | CTAG | 1 cut(s) | 281 |
| GluI | GCNGC | 3 cut(s) | 161, 164, 495 |
| HaeIII | GGCC | 2 cut(s) | 420, 453 |
| HapII | CCGG | 1 cut(s) | 311 |
| Hin1II | CATG | 7 cut(s) | 64, 158, 273, 331, 364, 425, 556 |
| HinfI | GANTC | 1 cut(s) | 589 |
| HpaII | CCGG | 1 cut(s) | 311 |
| HphI | GGTGA | 2 cut(s) | 173, 477 |
| Hpy166II | GTNNAC | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 2 cut(s) | 399, 468 |
| Hpy188III | TCNNGA | 4 cut(s) | 155, 287, 296, 380 |
| Hpy8I | GTNNAC | 1 cut(s) | 58 |
| HpyAV | CCTTC | 2 cut(s) | 40, 528 |
| HpyCH4III | ACNGT | 1 cut(s) | 29 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 4 cut(s) | 69, 275, 494, 560 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 566 |
| HpyF3I | CTNAG | 1 cut(s) | 245 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92II | CATG | 7 cut(s) | 64, 158, 273, 331, 364, 425, 556 |
| Ksp22I | TGATCA | 3 cut(s) | 178, 208, 445 |
| Kzo9I | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| LmnI | GCTCC | 1 cut(s) | 362 |
| LpnPI | CCDG | 9 cut(s) | 55, 246, 261, 324, 326, 365, 415, 468, 570 |
| Lsp1109I | GCAGC | 3 cut(s) | 172, 175, 506 |
| LweI | GCATC | 1 cut(s) | 56 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MalI | GATC | 9 cut(s) | 7, 180, 210, 285, 291, 378, 384, 447, 501 |
| MboI | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| MboII | GAAGA | 4 cut(s) | 35, 214, 255, 591 |
| MfeI | CAATTG | 1 cut(s) | 527 |
| MflI | RGATCY | 1 cut(s) | 376 |
| MhlI | GDGCHC | 1 cut(s) | 359 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 3 cut(s) | 304, 335, 527 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MnlI | CCTC | 6 cut(s) | 141, 271, 292, 499, 525, 607 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 3 cut(s) | 534, 543, 600 |
| MslI | CAYNNNNRTG | 1 cut(s) | 171 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspI | CCGG | 1 cut(s) | 311 |
| MunI | CAATTG | 1 cut(s) | 527 |
| Mva1269I | GAATGC | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 566 |
| NcoI | CCATGG | 2 cut(s) | 327, 360 |
| NdeII | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| NlaIII | CATG | 7 cut(s) | 64, 158, 273, 331, 364, 425, 556 |
| NlaIV | GGNNCC | 2 cut(s) | 101, 129 |
| NmuCI | GTSAC | 1 cut(s) | 319 |
| PagI | TCATGA | 1 cut(s) | 154 |
| PctI | GAATGC | 1 cut(s) | 435 |
| PfeI | GAWTC | 1 cut(s) | 589 |
| PkrI | GCNGC | 3 cut(s) | 162, 165, 496 |
| PpuMI | RGGWCCY | 1 cut(s) | 604 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| Psp124BI | GAGCTC | 1 cut(s) | 359 |
| Psp5II | RGGWCCY | 1 cut(s) | 604 |
| PspN4I | GGNNCC | 2 cut(s) | 101, 129 |
| PspPI | GGNCC | 2 cut(s) | 452, 604 |
| PspPPI | RGGWCCY | 1 cut(s) | 604 |
| PstI | CTGCAG | 2 cut(s) | 496, 562 |
| PsuI | RGATCY | 1 cut(s) | 376 |
| RsaI | GTAC | 1 cut(s) | 59 |
| RsaNI | GTAC | 1 cut(s) | 58 |
| RseI | CAYNNNNRTG | 1 cut(s) | 171 |
| SacI | GAGCTC | 1 cut(s) | 359 |
| SaqAI | TTAA | 3 cut(s) | 534, 543, 600 |
| SatI | GCNGC | 3 cut(s) | 161, 164, 495 |
| Sau3AI | GATC | 9 cut(s) | 5, 178, 208, 283, 289, 376, 382, 445, 499 |
| Sau96I | GGNCC | 2 cut(s) | 452, 604 |
| SduI | GDGCHC | 1 cut(s) | 359 |
| SetI | ASST | 7 cut(s) | 14, 20, 114, 246, 359, 418, 609 |
| SfaNI | GCATC | 1 cut(s) | 56 |
| SfcI | CTRYAG | 2 cut(s) | 492, 558 |
| SinI | GGWCC | 1 cut(s) | 604 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 171 |
| Sse9I | AATT | 3 cut(s) | 304, 335, 527 |
| SspMI | CTAG | 1 cut(s) | 281 |
| SstI | GAGCTC | 1 cut(s) | 359 |
| StyI | CCWWGG | 2 cut(s) | 327, 360 |
| TaaI | ACNGT | 1 cut(s) | 29 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 3 cut(s) | 119, 286, 349 |
| TasI | AATT | 3 cut(s) | 304, 335, 527 |
| TatI | WGTACW | 1 cut(s) | 57 |
| TfiI | GAWTC | 1 cut(s) | 589 |
| Tru1I | TTAA | 3 cut(s) | 534, 543, 600 |
| Tru9I | TTAA | 3 cut(s) | 534, 543, 600 |
| TseFI | GTSAC | 1 cut(s) | 319 |
| TseI | GCWGC | 3 cut(s) | 160, 163, 494 |
| Tsp45I | GTSAC | 1 cut(s) | 319 |
| TspDTI | ATGAA | 6 cut(s) | 143, 214, 255, 452, 510, 541 |
| VpaK11BI | GGWCC | 1 cut(s) | 604 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 611 |
| XapI | RAATTY | 1 cut(s) | 335 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 367 |
| XspI | CTAG | 1 cut(s) | 281 |