Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 25 - 94 | 6.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 184 |
| Acc36I | ACCTGC | 1 cut(s) | 184 |
| AcoI | YGGCCR | 1 cut(s) | 231 |
| AcsI | RAATTY | 2 cut(s) | 32, 73 |
| AfaI | GTAC | 1 cut(s) | 97 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 56, 229 |
| AluBI | AGCT | 2 cut(s) | 22, 41 |
| AluI | AGCT | 2 cut(s) | 22, 41 |
| Alw21I | GWGCWC | 1 cut(s) | 43 |
| AoxI | GGCC | 2 cut(s) | 220, 231 |
| ApeKI | GCWGC | 1 cut(s) | 19 |
| ApoI | RAATTY | 2 cut(s) | 32, 73 |
| AxyI | CCTNAGG | 1 cut(s) | 55 |
| BalI | TGGCCA | 1 cut(s) | 233 |
| BanII | GRGCYC | 1 cut(s) | 43 |
| Bbv12I | GWGCWC | 1 cut(s) | 43 |
| BbvI | GCAGC | 1 cut(s) | 31 |
| BccI | CCATC | 3 cut(s) | 74, 145, 212 |
| BfmI | CTRYAG | 1 cut(s) | 183 |
| BfuAI | ACCTGC | 1 cut(s) | 184 |
| BisI | GCNGC | 1 cut(s) | 20 |
| BlsI | GCNGC | 1 cut(s) | 21 |
| BmsI | GCATC | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 1 cut(s) | 228 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 56, 229 |
| Bse21I | CCTNAGG | 1 cut(s) | 55 |
| BseDI | CCNNGG | 1 cut(s) | 228 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 56, 229 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 1 cut(s) | 39 |
| BseXI | GCAGC | 1 cut(s) | 31 |
| BshFI | GGCC | 2 cut(s) | 222, 233 |
| BsiHKAI | GWGCWC | 1 cut(s) | 43 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 56, 229 |
| BsnI | GGCC | 2 cut(s) | 222, 233 |
| Bsp1286I | GDGCHC | 1 cut(s) | 43 |
| Bsp143I | GATC | 1 cut(s) | 44 |
| BspANI | GGCC | 2 cut(s) | 222, 233 |
| BspCNI | CTCAG | 1 cut(s) | 68 |
| BspMI | ACCTGC | 1 cut(s) | 184 |
| BssECI | CCNNGG | 1 cut(s) | 228 |
| BssMI | GATC | 1 cut(s) | 44 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 1 cut(s) | 207 |
| BstDEI | CTNAG | 1 cut(s) | 55 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstKTI | GATC | 1 cut(s) | 47 |
| BstMBI | GATC | 1 cut(s) | 44 |
| BstSFI | CTRYAG | 1 cut(s) | 183 |
| BstV1I | GCAGC | 1 cut(s) | 31 |
| Bsu36I | CCTNAGG | 1 cut(s) | 55 |
| BsuRI | GGCC | 2 cut(s) | 222, 233 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BveI | ACCTGC | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 96 |
| CviAII | CATG | 2 cut(s) | 87, 140 |
| CviJI | RGCY | 7 cut(s) | 11, 22, 41, 84, 164, 222, 233 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 22, 41, 84, 164, 222, 233 |
| CviQI | GTAC | 1 cut(s) | 96 |
| DdeI | CTNAG | 1 cut(s) | 55 |
| DpnI | GATC | 1 cut(s) | 46 |
| DpnII | GATC | 1 cut(s) | 44 |
| EaeI | YGGCCR | 1 cut(s) | 231 |
| Ecl136II | GAGCTC | 1 cut(s) | 41 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 43 |
| Eco53kI | GAGCTC | 1 cut(s) | 41 |
| Eco81I | CCTNAGG | 1 cut(s) | 55 |
| EcoICRI | GAGCTC | 1 cut(s) | 41 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 54 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT38I | GRGCYC | 1 cut(s) | 43 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 2 cut(s) | 90, 143 |
| FaiI | YATR | 3 cut(s) | 65, 88, 141 |
| FatI | CATG | 2 cut(s) | 86, 139 |
| Fnu4HI | GCNGC | 1 cut(s) | 20 |
| FokI | GGATG | 1 cut(s) | 230 |
| FriOI | GRGCYC | 1 cut(s) | 43 |
| Fsp4HI | GCNGC | 1 cut(s) | 20 |
| GluI | GCNGC | 1 cut(s) | 20 |
| HaeIII | GGCC | 2 cut(s) | 222, 233 |
| Hin1II | CATG | 2 cut(s) | 90, 143 |
| HinfI | GANTC | 1 cut(s) | 266 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 217, 271 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 193, 205 |
| HpyF3I | CTNAG | 1 cut(s) | 55 |
| Hsp92II | CATG | 2 cut(s) | 90, 143 |
| Kzo9I | GATC | 1 cut(s) | 44 |
| LmnI | GCTCC | 1 cut(s) | 38 |
| LpnPI | CCDG | 3 cut(s) | 42, 87, 179 |
| Lsp1109I | GCAGC | 1 cut(s) | 31 |
| LweI | GCATC | 1 cut(s) | 6 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 1 cut(s) | 46 |
| MboI | GATC | 1 cut(s) | 44 |
| MfeI | CAATTG | 1 cut(s) | 146 |
| MhlI | GDGCHC | 1 cut(s) | 43 |
| MlsI | TGGCCA | 1 cut(s) | 233 |
| MluCI | AATT | 6 cut(s) | 32, 68, 73, 114, 146, 200 |
| MluNI | TGGCCA | 1 cut(s) | 233 |
| MlyI | GAGTC | 1 cut(s) | 275 |
| MmeI | TCCRAC | 1 cut(s) | 249 |
| MnlI | CCTC | 7 cut(s) | 60, 64, 100, 109, 233, 253, 279 |
| Mox20I | TGGCCA | 1 cut(s) | 233 |
| MscI | TGGCCA | 1 cut(s) | 233 |
| MseI | TTAA | 1 cut(s) | 71 |
| Msp20I | TGGCCA | 1 cut(s) | 233 |
| MunI | CAATTG | 1 cut(s) | 146 |
| NdeII | GATC | 1 cut(s) | 44 |
| NlaIII | CATG | 2 cut(s) | 90, 143 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| PaqCI | CACCTGC | 1 cut(s) | 184 |
| PkrI | GCNGC | 1 cut(s) | 21 |
| PleI | GAGTC | 1 cut(s) | 274 |
| PpsI | GAGTC | 1 cut(s) | 274 |
| Psp124BI | GAGCTC | 1 cut(s) | 43 |
| RsaI | GTAC | 1 cut(s) | 97 |
| RsaNI | GTAC | 1 cut(s) | 96 |
| SacI | GAGCTC | 1 cut(s) | 43 |
| SaqAI | TTAA | 1 cut(s) | 71 |
| SatI | GCNGC | 1 cut(s) | 20 |
| Sau3AI | GATC | 1 cut(s) | 44 |
| SchI | GAGTC | 1 cut(s) | 275 |
| SduI | GDGCHC | 1 cut(s) | 43 |
| SetI | ASST | 7 cut(s) | 24, 43, 61, 101, 198, 264, 290 |
| SfaNI | GCATC | 1 cut(s) | 6 |
| SfcI | CTRYAG | 1 cut(s) | 183 |
| Sse9I | AATT | 6 cut(s) | 32, 68, 73, 114, 146, 200 |
| SstI | GAGCTC | 1 cut(s) | 43 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaqI | TCGA | 1 cut(s) | 43 |
| TaqII | GACCGA | 1 cut(s) | 160 |
| TasI | AATT | 6 cut(s) | 32, 68, 73, 114, 146, 200 |
| Tru1I | TTAA | 1 cut(s) | 71 |
| Tru9I | TTAA | 1 cut(s) | 71 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 19 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 1 cut(s) | 52 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 54 |
| XapI | RAATTY | 2 cut(s) | 32, 73 |