Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 777 |
| Acc36I | ACCTGC | 3 cut(s) | 736, 769, 777 |
| AccB1I | GGYRCC | 1 cut(s) | 713 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 247 |
| AccI | GTMKAC | 2 cut(s) | 151, 281 |
| AccII | CGCG | 1 cut(s) | 871 |
| AccIII | TCCGGA | 1 cut(s) | 397 |
| AciI | CCGC | 5 cut(s) | 730, 795, 827, 839, 869 |
| AclWI | GGATC | 1 cut(s) | 408 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfaI | GTAC | 3 cut(s) | 62, 172, 529 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 129, 247, 860 |
| AflIII | ACRYGT | 1 cut(s) | 530 |
| AgsI | TTSAA | 2 cut(s) | 323, 506 |
| AjnI | CCWGG | 1 cut(s) | 848 |
| AluBI | AGCT | 5 cut(s) | 563, 603, 661, 760, 887 |
| AluI | AGCT | 5 cut(s) | 563, 603, 661, 760, 887 |
| Alw21I | GWGCWC | 1 cut(s) | 162 |
| Alw26I | GTCTC | 1 cut(s) | 226 |
| AlwI | GGATC | 1 cut(s) | 408 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 784 |
| Aor13HI | TCCGGA | 1 cut(s) | 397 |
| AoxI | GGCC | 2 cut(s) | 686, 851 |
| ApeKI | GCWGC | 6 cut(s) | 335, 420, 589, 757, 789, 884 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 26, 58 |
| AseI | ATTAAT | 1 cut(s) | 180 |
| AspLEI | GCGC | 1 cut(s) | 873 |
| AspS9I | GGNCC | 1 cut(s) | 702 |
| AsuC2I | CCSGG | 1 cut(s) | 700 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 482, 758 |
| AvaII | GGWCC | 1 cut(s) | 702 |
| BaeGI | GKGCMC | 1 cut(s) | 716 |
| BanI | GGYRCC | 1 cut(s) | 713 |
| BauI | CACGAG | 1 cut(s) | 438 |
| BbsI | GAAGAC | 2 cut(s) | 476, 513 |
| Bbv12I | GWGCWC | 1 cut(s) | 162 |
| BbvI | GCAGC | 6 cut(s) | 347, 407, 576, 769, 801, 896 |
| BccI | CCATC | 4 cut(s) | 12, 250, 579, 637 |
| BceAI | ACGGC | 1 cut(s) | 863 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 873 |
| BciT130I | CCWGG | 1 cut(s) | 850 |
| BciVI | GTATCC | 3 cut(s) | 195, 405, 535 |
| BcnI | CCSGG | 1 cut(s) | 700 |
| BcoDI | GTCTC | 1 cut(s) | 226 |
| BfaI | CTAG | 2 cut(s) | 69, 359 |
| BfmI | CTRYAG | 1 cut(s) | 776 |
| BfuAI | ACCTGC | 3 cut(s) | 736, 769, 777 |
| BfuI | GTATCC | 3 cut(s) | 195, 405, 535 |
| BisI | GCNGC | 7 cut(s) | 336, 421, 590, 758, 790, 869, 885 |
| BlsI | GCNGC | 7 cut(s) | 337, 422, 591, 759, 791, 870, 886 |
| Bme1390I | CCNGG | 2 cut(s) | 700, 850 |
| Bme18I | GGWCC | 1 cut(s) | 702 |
| BmgT120I | GGNCC | 1 cut(s) | 702 |
| BmiI | GGNNCC | 1 cut(s) | 715 |
| BmrFI | CCNGG | 2 cut(s) | 700, 850 |
| BmsI | GCATC | 3 cut(s) | 103, 265, 643 |
| BpiI | GAAGAC | 2 cut(s) | 476, 513 |
| BpuEI | CTTGAG | 2 cut(s) | 146, 623 |
| BpuMI | CCSGG | 1 cut(s) | 700 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 1 cut(s) | 848 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 129, 247, 860 |
| Bse1I | ACTGG | 1 cut(s) | 395 |
| Bse3DI | GCAATG | 1 cut(s) | 584 |
| BseAI | TCCGGA | 1 cut(s) | 397 |
| BseBI | CCWGG | 1 cut(s) | 850 |
| BseDI | CCNNGG | 1 cut(s) | 848 |
| BseGI | GGATG | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 129, 247, 860 |
| BseMI | GCAATG | 1 cut(s) | 584 |
| BseMII | CTCAG | 1 cut(s) | 209 |
| BseNI | ACTGG | 1 cut(s) | 395 |
| BseSI | GKGCMC | 1 cut(s) | 716 |
| BseXI | GCAGC | 6 cut(s) | 347, 407, 576, 769, 801, 896 |
| BsgI | GTGCAG | 1 cut(s) | 808 |
| Bsh1236I | CGCG | 1 cut(s) | 871 |
| Bsh1285I | CGRYCG | 1 cut(s) | 893 |
| BshFI | GGCC | 2 cut(s) | 688, 853 |
| BshNI | GGYRCC | 1 cut(s) | 713 |
| BsiEI | CGRYCG | 1 cut(s) | 893 |
| BsiHKAI | GWGCWC | 1 cut(s) | 162 |
| BsiSI | CCGG | 3 cut(s) | 398, 700, 861 |
| BslFI | GGGAC | 1 cut(s) | 682 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 129, 247, 860 |
| BsmAI | GTCTC | 1 cut(s) | 226 |
| BsmFI | GGGAC | 1 cut(s) | 682 |
| BsnI | GGCC | 2 cut(s) | 688, 853 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 716 |
| Bsp13I | TCCGGA | 1 cut(s) | 397 |
| Bsp1407I | TGTACA | 2 cut(s) | 60, 527 |
| Bsp143I | GATC | 4 cut(s) | 265, 400, 472, 890 |
| BspACI | CCGC | 5 cut(s) | 730, 795, 827, 839, 869 |
| BspANI | GGCC | 2 cut(s) | 688, 853 |
| BspCNI | CTCAG | 1 cut(s) | 210 |
| BspEI | TCCGGA | 1 cut(s) | 397 |
| BspFNI | CGCG | 1 cut(s) | 871 |
| BspLI | GGNNCC | 1 cut(s) | 715 |
| BspMAI | CTGCAG | 1 cut(s) | 780 |
| BspMI | ACCTGC | 3 cut(s) | 736, 769, 777 |
| BspPI | GGATC | 1 cut(s) | 408 |
| BspT107I | GGYRCC | 1 cut(s) | 713 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrDI | GCAATG | 1 cut(s) | 584 |
| BsrGI | TGTACA | 2 cut(s) | 60, 527 |
| BsrI | ACTGG | 1 cut(s) | 395 |
| BssECI | CCNNGG | 1 cut(s) | 848 |
| BssMI | GATC | 4 cut(s) | 265, 400, 472, 890 |
| BssSI | CACGAG | 1 cut(s) | 438 |
| Bst2BI | CACGAG | 1 cut(s) | 438 |
| Bst2UI | CCWGG | 1 cut(s) | 850 |
| Bst4CI | ACNGT | 4 cut(s) | 86, 482, 706, 718 |
| Bst6I | CTCTTC | 1 cut(s) | 517 |
| BstAUI | TGTACA | 2 cut(s) | 60, 527 |
| BstC8I | GCNNGC | 3 cut(s) | 418, 743, 866 |
| BstDEI | CTNAG | 2 cut(s) | 218, 347 |
| BstF5I | GGATG | 1 cut(s) | 23 |
| BstFNI | CGCG | 1 cut(s) | 871 |
| BstHHI | GCGC | 1 cut(s) | 873 |
| BstKTI | GATC | 4 cut(s) | 268, 403, 475, 893 |
| BstMAI | GTCTC | 1 cut(s) | 226 |
| BstMBI | GATC | 4 cut(s) | 265, 400, 472, 890 |
| BstMCI | CGRYCG | 1 cut(s) | 893 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 219, 667, 870, 884 |
| BstNI | CCWGG | 1 cut(s) | 850 |
| BstNSI | RCATGY | 1 cut(s) | 534 |
| BstSCI | CCNGG | 2 cut(s) | 698, 848 |
| BstSFI | CTRYAG | 1 cut(s) | 776 |
| BstSLI | GKGCMC | 1 cut(s) | 716 |
| BstUI | CGCG | 1 cut(s) | 871 |
| BstV1I | GCAGC | 6 cut(s) | 347, 407, 576, 769, 801, 896 |
| BstV2I | GAAGAC | 2 cut(s) | 476, 513 |
| BsuI | GTATCC | 3 cut(s) | 195, 405, 535 |
| BsuRI | GGCC | 2 cut(s) | 688, 853 |
| BtsCI | GGATG | 1 cut(s) | 23 |
| BtsIMutI | CAGTG | 3 cut(s) | 215, 336, 478 |
| BveI | ACCTGC | 3 cut(s) | 736, 769, 777 |
| Cac8I | GCNNGC | 3 cut(s) | 418, 743, 866 |
| CaiI | CAGNNNCTG | 1 cut(s) | 784 |
| CfoI | GCGC | 1 cut(s) | 873 |
| Cfr13I | GGNCC | 1 cut(s) | 702 |
| CpoI | CGGWCCG | 1 cut(s) | 702 |
| CseI | GACGC | 1 cut(s) | 267 |
| Csp6I | GTAC | 3 cut(s) | 61, 171, 528 |
| CspI | CGGWCCG | 1 cut(s) | 702 |
| CviAII | CATG | 4 cut(s) | 129, 198, 531, 547 |
| CviQI | GTAC | 3 cut(s) | 61, 171, 528 |
| DdeI | CTNAG | 2 cut(s) | 218, 347 |
| DpnI | GATC | 4 cut(s) | 267, 402, 474, 892 |
| DpnII | GATC | 4 cut(s) | 265, 400, 472, 890 |
| DraI | TTTAAA | 1 cut(s) | 607 |
| Eam1104I | CTCTTC | 1 cut(s) | 517 |
| EarI | CTCTTC | 1 cut(s) | 517 |
| EciI | GGCGGA | 1 cut(s) | 745 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco32I | GATATC | 1 cut(s) | 555 |
| Eco47I | GGWCC | 1 cut(s) | 702 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 848 |
| EcoRV | GATATC | 1 cut(s) | 555 |
| EcoT22I | ATGCAT | 1 cut(s) | 636 |
| FaeI | CATG | 4 cut(s) | 132, 201, 534, 550 |
| FaqI | GGGAC | 1 cut(s) | 682 |
| FatI | CATG | 4 cut(s) | 128, 197, 530, 546 |
| FblI | GTMKAC | 2 cut(s) | 151, 281 |
| Fnu4HI | GCNGC | 7 cut(s) | 336, 421, 590, 758, 790, 869, 885 |
| FokI | GGATG | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 7 cut(s) | 336, 421, 590, 758, 790, 869, 885 |
| FspBI | CTAG | 2 cut(s) | 69, 359 |
| GlaI | GCGC | 1 cut(s) | 872 |
| GluI | GCNGC | 7 cut(s) | 336, 421, 590, 758, 790, 869, 885 |
| HaeIII | GGCC | 2 cut(s) | 688, 853 |
| HapII | CCGG | 3 cut(s) | 398, 700, 861 |
| HgaI | GACGC | 1 cut(s) | 267 |
| HhaI | GCGC | 1 cut(s) | 873 |
| Hin1II | CATG | 4 cut(s) | 132, 201, 534, 550 |
| Hin6I | GCGC | 1 cut(s) | 871 |
| HinP1I | GCGC | 1 cut(s) | 871 |
| HindIII | AAGCTT | 1 cut(s) | 659 |
| HinfI | GANTC | 4 cut(s) | 194, 295, 509, 695 |
| HpaII | CCGG | 3 cut(s) | 398, 700, 861 |
| HphI | GGTGA | 3 cut(s) | 122, 482, 758 |
| Hpy166II | GTNNAC | 2 cut(s) | 152, 282 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 369 |
| Hpy188III | TCNNGA | 4 cut(s) | 229, 398, 440, 640 |
| Hpy8I | GTNNAC | 2 cut(s) | 152, 282 |
| Hpy99I | CGWCG | 2 cut(s) | 46, 884 |
| HpyAV | CCTTC | 6 cut(s) | 48, 129, 336, 577, 685, 814 |
| HpyCH4III | ACNGT | 4 cut(s) | 86, 482, 706, 718 |
| HpyCH4V | TGCA | 8 cut(s) | 116, 423, 577, 634, 745, 772, 778, 789 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 219, 667, 870, 884 |
| HpyF3I | CTNAG | 2 cut(s) | 218, 347 |
| Hsp92II | CATG | 4 cut(s) | 132, 201, 534, 550 |
| HspAI | GCGC | 1 cut(s) | 871 |
| Kpn2I | TCCGGA | 1 cut(s) | 397 |
| Kzo9I | GATC | 4 cut(s) | 265, 400, 472, 890 |
| LmnI | GCTCC | 1 cut(s) | 568 |
| Lsp1109I | GCAGC | 6 cut(s) | 347, 407, 576, 769, 801, 896 |
| LweI | GCATC | 3 cut(s) | 103, 265, 643 |
| MaeI | CTAG | 2 cut(s) | 69, 359 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 4 cut(s) | 267, 402, 474, 892 |
| MboI | GATC | 4 cut(s) | 265, 400, 472, 890 |
| MboII | GAAGA | 3 cut(s) | 476, 504, 518 |
| MhlI | GDGCHC | 2 cut(s) | 162, 716 |
| MluCI | AATT | 3 cut(s) | 24, 342, 424 |
| MlyI | GAGTC | 3 cut(s) | 203, 503, 704 |
| Mph1103I | ATGCAT | 1 cut(s) | 636 |
| MroI | TCCGGA | 1 cut(s) | 397 |
| MseI | TTAA | 2 cut(s) | 180, 606 |
| MspI | CCGG | 3 cut(s) | 398, 700, 861 |
| MspR9I | CCNGG | 2 cut(s) | 700, 850 |
| MvaI | CCWGG | 1 cut(s) | 850 |
| MvnI | CGCG | 1 cut(s) | 871 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 219, 667, 870, 884 |
| NciI | CCSGG | 1 cut(s) | 700 |
| NdeII | GATC | 4 cut(s) | 265, 400, 472, 890 |
| NlaIII | CATG | 4 cut(s) | 132, 201, 534, 550 |
| NlaIV | GGNNCC | 1 cut(s) | 715 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| NsiI | ATGCAT | 1 cut(s) | 636 |
| NspI | RCATGY | 1 cut(s) | 534 |
| PaqCI | CACCTGC | 1 cut(s) | 777 |
| PciI | ACATGT | 1 cut(s) | 530 |
| PfeI | GAWTC | 1 cut(s) | 295 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 247 |
| PfoI | TCCNGGA | 1 cut(s) | 698 |
| PkrI | GCNGC | 7 cut(s) | 337, 422, 591, 759, 791, 870, 886 |
| Ple19I | CGATCG | 1 cut(s) | 893 |
| PleI | GAGTC | 3 cut(s) | 202, 503, 703 |
| PpsI | GAGTC | 3 cut(s) | 202, 503, 703 |
| PscI | ACATGT | 1 cut(s) | 530 |
| PshBI | ATTAAT | 1 cut(s) | 180 |
| Psp6I | CCWGG | 1 cut(s) | 848 |
| PspGI | CCWGG | 1 cut(s) | 848 |
| PspN4I | GGNNCC | 1 cut(s) | 715 |
| PspPI | GGNCC | 1 cut(s) | 702 |
| PstI | CTGCAG | 1 cut(s) | 780 |
| PstNI | CAGNNNCTG | 1 cut(s) | 784 |
| PvuI | CGATCG | 1 cut(s) | 893 |
| RsaI | GTAC | 3 cut(s) | 62, 172, 529 |
| RsaNI | GTAC | 3 cut(s) | 61, 171, 528 |
| Rsr2I | CGGWCCG | 1 cut(s) | 702 |
| RsrII | CGGWCCG | 1 cut(s) | 702 |
| SaqAI | TTAA | 2 cut(s) | 180, 606 |
| SatI | GCNGC | 7 cut(s) | 336, 421, 590, 758, 790, 869, 885 |
| Sau3AI | GATC | 4 cut(s) | 265, 400, 472, 890 |
| Sau96I | GGNCC | 1 cut(s) | 702 |
| SchI | GAGTC | 3 cut(s) | 203, 503, 704 |
| ScrFI | CCNGG | 2 cut(s) | 700, 850 |
| SduI | GDGCHC | 2 cut(s) | 162, 716 |
| SfaNI | GCATC | 3 cut(s) | 103, 265, 643 |
| SfcI | CTRYAG | 1 cut(s) | 776 |
| SinI | GGWCC | 1 cut(s) | 702 |
| SmlI | CTYRAG | 2 cut(s) | 161, 638 |
| SmoI | CTYRAG | 2 cut(s) | 161, 638 |
| Sse9I | AATT | 3 cut(s) | 24, 342, 424 |
| SsiI | CCGC | 5 cut(s) | 730, 795, 827, 839, 869 |
| SspMI | CTAG | 2 cut(s) | 69, 359 |
| StyD4I | CCNGG | 2 cut(s) | 698, 848 |
| TaaI | ACNGT | 4 cut(s) | 86, 482, 706, 718 |
| TaqI | TCGA | 3 cut(s) | 721, 889, 893 |
| TasI | AATT | 3 cut(s) | 24, 342, 424 |
| TatI | WGTACW | 2 cut(s) | 60, 527 |
| TauI | GCSGC | 1 cut(s) | 871 |
| TfiI | GAWTC | 1 cut(s) | 295 |
| Tru1I | TTAA | 2 cut(s) | 180, 606 |
| Tru9I | TTAA | 2 cut(s) | 180, 606 |
| TscAI | CASTG | 3 cut(s) | 222, 336, 485 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 6 cut(s) | 335, 420, 589, 757, 789, 884 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 1 cut(s) | 117 |
| TspGWI | ACGGA | 2 cut(s) | 387, 554 |
| TspRI | CASTG | 3 cut(s) | 222, 336, 485 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 247 |
| VpaK11BI | GGWCC | 1 cut(s) | 702 |
| VspI | ATTAAT | 1 cut(s) | 180 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XceI | RCATGY | 1 cut(s) | 534 |
| XmiI | GTMKAC | 2 cut(s) | 151, 281 |
| XspI | CTAG | 2 cut(s) | 69, 359 |
| Zsp2I | ATGCAT | 1 cut(s) | 636 |