ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 180 - 234 | 1.6e-07 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 943 |
| Acc16I | TGCGCA | 1 cut(s) | 675 |
| AccII | CGCG | 1 cut(s) | 888 |
| AciI | CCGC | 7 cut(s) | 32, 337, 482, 886, 888, 981, 1104 |
| AclWI | GGATC | 4 cut(s) | 344, 357, 816, 1133 |
| AcoI | YGGCCR | 3 cut(s) | 906, 931, 1088 |
| AcuI | CTGAAG | 1 cut(s) | 728 |
| AfaI | GTAC | 2 cut(s) | 206, 670 |
| AgsI | TTSAA | 1 cut(s) | 850 |
| AhlI | ACTAGT | 1 cut(s) | 538 |
| AjnI | CCWGG | 2 cut(s) | 200, 633 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 34, 66, 440, 472 |
| AluBI | AGCT | 4 cut(s) | 730, 1034, 1043, 1121 |
| AluI | AGCT | 4 cut(s) | 730, 1034, 1043, 1121 |
| Alw26I | GTCTC | 1 cut(s) | 822 |
| AlwI | GGATC | 4 cut(s) | 344, 357, 816, 1133 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| Ama87I | CYCGRG | 2 cut(s) | 282, 369 |
| AoxI | GGCC | 8 cut(s) | 198, 279, 380, 526, 906, 931, 1088, 1187 |
| ApeKI | GCWGC | 3 cut(s) | 880, 1031, 1118 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 493, 525, 586, 618 |
| AspA2I | CCTAGG | 1 cut(s) | 1190 |
| AspLEI | GCGC | 2 cut(s) | 676, 885 |
| AspS9I | GGNCC | 2 cut(s) | 280, 527 |
| AsuC2I | CCSGG | 3 cut(s) | 283, 284, 530 |
| AsuHPI | GGTGA | 2 cut(s) | 332, 1009 |
| AsuNHI | GCTAGC | 1 cut(s) | 1043 |
| AvaI | CYCGRG | 2 cut(s) | 282, 369 |
| AvrII | CCTAGG | 1 cut(s) | 1190 |
| BalI | TGGCCA | 2 cut(s) | 908, 1090 |
| BamHI | GGATCC | 1 cut(s) | 349 |
| BbsI | GAAGAC | 1 cut(s) | 1142 |
| BbvI | GCAGC | 3 cut(s) | 867, 1043, 1130 |
| BccI | CCATC | 2 cut(s) | 259, 917 |
| BceAI | ACGGC | 1 cut(s) | 1131 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 665, 699 |
| BciT130I | CCWGG | 2 cut(s) | 202, 635 |
| BcnI | CCSGG | 3 cut(s) | 283, 284, 530 |
| BcoDI | GTCTC | 1 cut(s) | 822 |
| BcuI | ACTAGT | 1 cut(s) | 538 |
| BfaI | CTAG | 7 cut(s) | 9, 363, 539, 546, 948, 1044, 1191 |
| BglII | AGATCT | 1 cut(s) | 611 |
| BisI | GCNGC | 6 cut(s) | 881, 886, 889, 982, 1032, 1119 |
| BlnI | CCTAGG | 1 cut(s) | 1190 |
| BlsI | GCNGC | 6 cut(s) | 882, 887, 890, 983, 1033, 1120 |
| Bme1390I | CCNGG | 5 cut(s) | 202, 283, 284, 530, 635 |
| BmeT110I | CYCGRG | 2 cut(s) | 282, 369 |
| BmgT120I | GGNCC | 2 cut(s) | 280, 527 |
| BmiI | GGNNCC | 2 cut(s) | 351, 359 |
| BmrFI | CCNGG | 5 cut(s) | 202, 283, 284, 530, 635 |
| BmtI | GCTAGC | 1 cut(s) | 1047 |
| BpiI | GAAGAC | 1 cut(s) | 1142 |
| Bpu10I | CCTNAGC | 1 cut(s) | 726 |
| BpuMI | CCSGG | 3 cut(s) | 283, 284, 530 |
| BsaBI | GATNNNNATC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 7 cut(s) | 282, 353, 368, 634, 886, 1091, 1190 |
| Bse8I | GATNNNNATC | 1 cut(s) | 489 |
| BseBI | CCWGG | 2 cut(s) | 202, 635 |
| BseDI | CCNNGG | 7 cut(s) | 282, 353, 368, 634, 886, 1091, 1190 |
| BseGI | GGATG | 4 cut(s) | 40, 60, 490, 1024 |
| BseJI | GATNNNNATC | 1 cut(s) | 489 |
| BseMII | CTCAG | 1 cut(s) | 767 |
| BseRI | GAGGAG | 4 cut(s) | 101, 671, 674, 677 |
| BseXI | GCAGC | 3 cut(s) | 867, 1043, 1130 |
| BseYI | CCCAGC | 1 cut(s) | 969 |
| Bsh1236I | CGCG | 1 cut(s) | 888 |
| Bsh1285I | CGRYCG | 1 cut(s) | 995 |
| BshFI | GGCC | 8 cut(s) | 200, 281, 382, 528, 908, 933, 1090, 1189 |
| BsiEI | CGRYCG | 1 cut(s) | 995 |
| BsiHKCI | CYCGRG | 2 cut(s) | 282, 369 |
| BsiSI | CCGG | 3 cut(s) | 283, 530, 934 |
| BslFI | GGGAC | 2 cut(s) | 316, 386 |
| BsmAI | GTCTC | 1 cut(s) | 822 |
| BsmFI | GGGAC | 2 cut(s) | 316, 386 |
| BsnI | GGCC | 8 cut(s) | 200, 281, 382, 528, 908, 933, 1090, 1189 |
| BsoBI | CYCGRG | 2 cut(s) | 282, 369 |
| Bsp143I | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| Bsp19I | CCATGG | 1 cut(s) | 1091 |
| BspACI | CCGC | 7 cut(s) | 32, 337, 482, 886, 888, 981, 1104 |
| BspANI | GGCC | 8 cut(s) | 200, 281, 382, 528, 908, 933, 1090, 1189 |
| BspCNI | CTCAG | 1 cut(s) | 766 |
| BspFNI | CGCG | 1 cut(s) | 888 |
| BspLI | GGNNCC | 2 cut(s) | 351, 359 |
| BspOI | GCTAGC | 1 cut(s) | 1047 |
| BspPI | GGATC | 4 cut(s) | 344, 357, 816, 1133 |
| BssECI | CCNNGG | 7 cut(s) | 282, 353, 368, 634, 886, 1091, 1190 |
| BssMI | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| BssT1I | CCWWGG | 3 cut(s) | 353, 1091, 1190 |
| Bst2UI | CCWGG | 2 cut(s) | 202, 635 |
| Bst4CI | ACNGT | 1 cut(s) | 598 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 6 cut(s) | 138, 339, 480, 522, 526, 1045 |
| BstDEI | CTNAG | 4 cut(s) | 386, 615, 726, 753 |
| BstDSI | CCRYGG | 2 cut(s) | 886, 1091 |
| BstF5I | GGATG | 4 cut(s) | 40, 60, 490, 1024 |
| BstFNI | CGCG | 1 cut(s) | 888 |
| BstHHI | GCGC | 2 cut(s) | 676, 885 |
| BstKTI | GATC | 8 cut(s) | 112, 352, 493, 614, 789, 811, 995, 1128 |
| BstMAI | GTCTC | 1 cut(s) | 822 |
| BstMBI | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| BstMCI | CGRYCG | 1 cut(s) | 995 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 1040, 1118 |
| BstNI | CCWGG | 2 cut(s) | 202, 635 |
| BstNSI | RCATGY | 2 cut(s) | 623, 680 |
| BstSCI | CCNGG | 5 cut(s) | 200, 281, 282, 528, 633 |
| BstUI | CGCG | 1 cut(s) | 888 |
| BstV1I | GCAGC | 3 cut(s) | 867, 1043, 1130 |
| BstV2I | GAAGAC | 1 cut(s) | 1142 |
| BstX2I | RGATCY | 3 cut(s) | 349, 611, 808 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1098 |
| BstYI | RGATCY | 3 cut(s) | 349, 611, 808 |
| BsuRI | GGCC | 8 cut(s) | 200, 281, 382, 528, 908, 933, 1090, 1189 |
| BtgI | CCRYGG | 2 cut(s) | 886, 1091 |
| BtsCI | GGATG | 4 cut(s) | 40, 60, 490, 1024 |
| Cac8I | GCNNGC | 6 cut(s) | 138, 339, 480, 522, 526, 1045 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| CfoI | GCGC | 2 cut(s) | 676, 885 |
| Cfr13I | GGNCC | 2 cut(s) | 280, 527 |
| Cfr42I | CCGCGG | 1 cut(s) | 889 |
| Cfr9I | CCCGGG | 1 cut(s) | 282 |
| Csp6I | GTAC | 2 cut(s) | 205, 669 |
| CviAII | CATG | 9 cut(s) | 247, 620, 677, 734, 784, 842, 910, 1059, 1092 |
| CviQI | GTAC | 2 cut(s) | 205, 669 |
| DdeI | CTNAG | 4 cut(s) | 386, 615, 726, 753 |
| DpnI | GATC | 8 cut(s) | 111, 351, 492, 613, 788, 810, 994, 1127 |
| DpnII | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 943 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 943 |
| EaeI | YGGCCR | 3 cut(s) | 906, 931, 1088 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| EciI | GGCGGA | 1 cut(s) | 497 |
| Eco130I | CCWWGG | 3 cut(s) | 353, 1091, 1190 |
| Eco57I | CTGAAG | 1 cut(s) | 728 |
| Eco88I | CYCGRG | 2 cut(s) | 282, 369 |
| EcoRII | CCWGG | 2 cut(s) | 200, 633 |
| EcoT14I | CCWWGG | 3 cut(s) | 353, 1091, 1190 |
| ErhI | CCWWGG | 3 cut(s) | 353, 1091, 1190 |
| FaeI | CATG | 9 cut(s) | 250, 623, 680, 737, 787, 845, 913, 1062, 1095 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 608, 640, 968, 1000 |
| FaqI | GGGAC | 2 cut(s) | 316, 386 |
| FatI | CATG | 9 cut(s) | 246, 619, 676, 733, 783, 841, 909, 1058, 1091 |
| FauI | CCCGC | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 6 cut(s) | 881, 886, 889, 982, 1032, 1119 |
| FokI | GGATG | 4 cut(s) | 47, 67, 497, 1031 |
| Fsp4HI | GCNGC | 6 cut(s) | 881, 886, 889, 982, 1032, 1119 |
| FspBI | CTAG | 7 cut(s) | 9, 363, 539, 546, 948, 1044, 1191 |
| FspI | TGCGCA | 1 cut(s) | 675 |
| GlaI | GCGC | 2 cut(s) | 675, 884 |
| GluI | GCNGC | 6 cut(s) | 881, 886, 889, 982, 1032, 1119 |
| GsaI | CCCAGC | 1 cut(s) | 973 |
| HaeIII | GGCC | 8 cut(s) | 200, 281, 382, 528, 908, 933, 1090, 1189 |
| HapII | CCGG | 3 cut(s) | 283, 530, 934 |
| HhaI | GCGC | 2 cut(s) | 676, 885 |
| Hin1II | CATG | 9 cut(s) | 250, 623, 680, 737, 787, 845, 913, 1062, 1095 |
| Hin6I | GCGC | 2 cut(s) | 674, 883 |
| HinP1I | GCGC | 2 cut(s) | 674, 883 |
| HincII | GTYRAC | 1 cut(s) | 957 |
| HindII | GTYRAC | 1 cut(s) | 957 |
| HindIII | AAGCTT | 1 cut(s) | 728 |
| HpaII | CCGG | 3 cut(s) | 283, 530, 934 |
| HphI | GGTGA | 2 cut(s) | 332, 1009 |
| Hpy166II | GTNNAC | 1 cut(s) | 957 |
| Hpy188I | TCNGA | 8 cut(s) | 81, 393, 495, 501, 583, 594, 760, 922 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 170, 371, 568, 686, 704 |
| Hpy8I | GTNNAC | 1 cut(s) | 957 |
| HpyAV | CCTTC | 5 cut(s) | 76, 180, 252, 565, 752 |
| HpyCH4III | ACNGT | 1 cut(s) | 598 |
| HpyCH4IV | ACGT | 2 cut(s) | 917, 1179 |
| HpyCH4V | TGCA | 2 cut(s) | 562, 1112 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 1040, 1118 |
| HpyF3I | CTNAG | 4 cut(s) | 386, 615, 726, 753 |
| HpySE526I | ACGT | 2 cut(s) | 917, 1179 |
| Hsp92II | CATG | 9 cut(s) | 250, 623, 680, 737, 787, 845, 913, 1062, 1095 |
| HspAI | GCGC | 2 cut(s) | 674, 883 |
| KspI | CCGCGG | 1 cut(s) | 889 |
| Kzo9I | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| LmnI | GCTCC | 2 cut(s) | 238, 363 |
| Lsp1109I | GCAGC | 3 cut(s) | 867, 1043, 1130 |
| MaeI | CTAG | 7 cut(s) | 9, 363, 539, 546, 948, 1044, 1191 |
| MaeII | ACGT | 2 cut(s) | 917, 1179 |
| MaeIII | GTNAC | 2 cut(s) | 320, 895 |
| MalI | GATC | 8 cut(s) | 111, 351, 492, 613, 788, 810, 994, 1127 |
| MboI | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| MboII | GAAGA | 5 cut(s) | 170, 581, 637, 819, 1147 |
| MflI | RGATCY | 3 cut(s) | 349, 611, 808 |
| MlsI | TGGCCA | 2 cut(s) | 908, 1090 |
| MluCI | AATT | 3 cut(s) | 315, 504, 823 |
| MluNI | TGGCCA | 2 cut(s) | 908, 1090 |
| MlyI | GAGTC | 6 cut(s) | 167, 298, 523, 863, 1009, 1016 |
| MmeI | TCCRAC | 2 cut(s) | 617, 882 |
| Mox20I | TGGCCA | 2 cut(s) | 908, 1090 |
| MscI | TGGCCA | 2 cut(s) | 908, 1090 |
| MseI | TTAA | 8 cut(s) | 162, 297, 555, 630, 801, 822, 1065, 1182 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1096 |
| Msp20I | TGGCCA | 2 cut(s) | 908, 1090 |
| MspA1I | CMGCKG | 2 cut(s) | 32, 888 |
| MspI | CCGG | 3 cut(s) | 283, 530, 934 |
| MspR9I | CCNGG | 5 cut(s) | 202, 283, 284, 530, 635 |
| MvaI | CCWGG | 2 cut(s) | 202, 635 |
| MvnI | CGCG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 1040, 1118 |
| NciI | CCSGG | 3 cut(s) | 283, 284, 530 |
| NcoI | CCATGG | 1 cut(s) | 1091 |
| NdeII | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| NheI | GCTAGC | 1 cut(s) | 1043 |
| NlaIII | CATG | 9 cut(s) | 250, 623, 680, 737, 787, 845, 913, 1062, 1095 |
| NlaIV | GGNNCC | 2 cut(s) | 351, 359 |
| NmuCI | GTSAC | 2 cut(s) | 320, 895 |
| NsbI | TGCGCA | 1 cut(s) | 675 |
| NspI | RCATGY | 2 cut(s) | 623, 680 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 786 |
| PfeI | GAWTC | 4 cut(s) | 46, 496, 770, 962 |
| PkrI | GCNGC | 6 cut(s) | 882, 887, 890, 983, 1033, 1120 |
| Ple19I | CGATCG | 1 cut(s) | 995 |
| PleI | GAGTC | 6 cut(s) | 167, 298, 522, 862, 1008, 1016 |
| PpsI | GAGTC | 6 cut(s) | 167, 298, 522, 862, 1008, 1016 |
| Psp6I | CCWGG | 2 cut(s) | 200, 633 |
| PspFI | CCCAGC | 1 cut(s) | 969 |
| PspGI | CCWGG | 2 cut(s) | 200, 633 |
| PspN4I | GGNNCC | 2 cut(s) | 351, 359 |
| PspPI | GGNCC | 2 cut(s) | 280, 527 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 3 cut(s) | 349, 611, 808 |
| PvuI | CGATCG | 1 cut(s) | 995 |
| RsaI | GTAC | 2 cut(s) | 206, 670 |
| RsaNI | GTAC | 2 cut(s) | 205, 669 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1096 |
| SacII | CCGCGG | 1 cut(s) | 889 |
| SaqAI | TTAA | 8 cut(s) | 162, 297, 555, 630, 801, 822, 1065, 1182 |
| SatI | GCNGC | 6 cut(s) | 881, 886, 889, 982, 1032, 1119 |
| Sau3AI | GATC | 8 cut(s) | 109, 349, 490, 611, 786, 808, 992, 1125 |
| Sau96I | GGNCC | 2 cut(s) | 280, 527 |
| SchI | GAGTC | 6 cut(s) | 167, 298, 523, 863, 1009, 1016 |
| ScrFI | CCNGG | 5 cut(s) | 202, 283, 284, 530, 635 |
| Sfr303I | CCGCGG | 1 cut(s) | 889 |
| SgrBI | CCGCGG | 1 cut(s) | 889 |
| SmaI | CCCGGG | 1 cut(s) | 284 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1096 |
| SpeI | ACTAGT | 1 cut(s) | 538 |
| Sse9I | AATT | 3 cut(s) | 315, 504, 823 |
| SsiI | CCGC | 7 cut(s) | 32, 337, 482, 886, 888, 981, 1104 |
| SspMI | CTAG | 7 cut(s) | 9, 363, 539, 546, 948, 1044, 1191 |
| StyD4I | CCNGG | 5 cut(s) | 200, 281, 282, 528, 633 |
| StyI | CCWWGG | 3 cut(s) | 353, 1091, 1190 |
| TaaI | ACNGT | 1 cut(s) | 598 |
| TaiI | ACGT | 2 cut(s) | 920, 1182 |
| TasI | AATT | 3 cut(s) | 315, 504, 823 |
| TauI | GCSGC | 3 cut(s) | 888, 891, 984 |
| TfiI | GAWTC | 4 cut(s) | 46, 496, 770, 962 |
| Tru1I | TTAA | 8 cut(s) | 162, 297, 555, 630, 801, 822, 1065, 1182 |
| Tru9I | TTAA | 8 cut(s) | 162, 297, 555, 630, 801, 822, 1065, 1182 |
| TseFI | GTSAC | 2 cut(s) | 320, 895 |
| TseI | GCWGC | 3 cut(s) | 880, 1031, 1118 |
| Tsp45I | GTSAC | 2 cut(s) | 320, 895 |
| TspDTI | ATGAA | 2 cut(s) | 38, 722 |
| TspGWI | ACGGA | 1 cut(s) | 974 |
| TspMI | CCCGGG | 1 cut(s) | 282 |
| XceI | RCATGY | 2 cut(s) | 623, 680 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XmaI | CCCGGG | 1 cut(s) | 282 |
| XmaJI | CCTAGG | 1 cut(s) | 1190 |
| XspI | CTAG | 7 cut(s) | 9, 363, 539, 546, 948, 1044, 1191 |