Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 224 |
| AccII | CGCG | 1 cut(s) | 1061 |
| AciI | CCGC | 5 cut(s) | 91, 592, 1056, 1059, 1152 |
| AcsI | RAATTY | 3 cut(s) | 304, 372, 499 |
| AcuI | CTGAAG | 1 cut(s) | 1209 |
| AfaI | GTAC | 4 cut(s) | 116, 157, 533, 1028 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 813, 1065, 1154, 1166, 1209 |
| AgsI | TTSAA | 8 cut(s) | 164, 173, 184, 197, 293, 323, 491, 727 |
| AhlI | ACTAGT | 1 cut(s) | 152 |
| AjnI | CCWGG | 5 cut(s) | 386, 769, 811, 1020, 1147 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 361, 393, 782, 814 |
| AluBI | AGCT | 4 cut(s) | 467, 751, 914, 1100 |
| AluI | AGCT | 4 cut(s) | 467, 751, 914, 1100 |
| Alw26I | GTCTC | 4 cut(s) | 108, 1022, 1120, 1145 |
| Ama87I | CYCGRG | 1 cut(s) | 1117 |
| AoxI | GGCC | 4 cut(s) | 3, 404, 804, 1077 |
| ApeKI | GCWGC | 1 cut(s) | 911 |
| ApoI | RAATTY | 3 cut(s) | 304, 372, 499 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 740, 772 |
| AspLEI | GCGC | 2 cut(s) | 12, 1063 |
| AspS9I | GGNCC | 5 cut(s) | 4, 756, 1078, 1093, 1157 |
| AsuC2I | CCSGG | 2 cut(s) | 7, 1204 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 567 |
| AsuNHI | GCTAGC | 1 cut(s) | 463 |
| AvaI | CYCGRG | 1 cut(s) | 1117 |
| AvaII | GGWCC | 3 cut(s) | 756, 1093, 1157 |
| BaeGI | GKGCMC | 1 cut(s) | 634 |
| BanI | GGYRCC | 1 cut(s) | 224 |
| BbsI | GAAGAC | 1 cut(s) | 980 |
| BbvI | GCAGC | 1 cut(s) | 923 |
| BccI | CCATC | 3 cut(s) | 580, 644, 1202 |
| BceAI | ACGGC | 1 cut(s) | 791 |
| BciT130I | CCWGG | 5 cut(s) | 388, 771, 813, 1022, 1149 |
| BclI | TGATCA | 1 cut(s) | 243 |
| BcnI | CCSGG | 2 cut(s) | 7, 1204 |
| BcoDI | GTCTC | 4 cut(s) | 108, 1022, 1120, 1145 |
| BcuI | ACTAGT | 1 cut(s) | 152 |
| BfaI | CTAG | 6 cut(s) | 153, 464, 609, 620, 840, 846 |
| BglII | AGATCT | 2 cut(s) | 436, 736 |
| BisI | GCNGC | 2 cut(s) | 912, 1059 |
| BlsI | GCNGC | 2 cut(s) | 913, 1060 |
| BmcAI | AGTACT | 2 cut(s) | 157, 533 |
| Bme1390I | CCNGG | 7 cut(s) | 7, 388, 771, 813, 1022, 1149, 1204 |
| Bme18I | GGWCC | 3 cut(s) | 756, 1093, 1157 |
| BmeT110I | CYCGRG | 1 cut(s) | 1117 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 756, 1078, 1093, 1157 |
| BmiI | GGNNCC | 5 cut(s) | 226, 720, 1080, 1095, 1232 |
| BmrFI | CCNGG | 7 cut(s) | 7, 388, 771, 813, 1022, 1149, 1204 |
| BmsI | GCATC | 2 cut(s) | 1171, 1189 |
| BmtI | GCTAGC | 1 cut(s) | 467 |
| BpiI | GAAGAC | 1 cut(s) | 980 |
| BpmI | CTGGAG | 1 cut(s) | 1004 |
| BpuEI | CTTGAG | 1 cut(s) | 1119 |
| BpuMI | CCSGG | 2 cut(s) | 7, 1204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1212 |
| BsaI | GGTCTC | 2 cut(s) | 1120, 1145 |
| BsaJI | CCNNGG | 5 cut(s) | 118, 407, 812, 978, 1203 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 692, 722 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 813, 1065, 1154, 1166, 1209 |
| Bse118I | RCCGGY | 2 cut(s) | 1075, 1184 |
| Bse1I | ACTGG | 1 cut(s) | 1044 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1212 |
| BseBI | CCWGG | 5 cut(s) | 388, 771, 813, 1022, 1149 |
| BseDI | CCNNGG | 5 cut(s) | 118, 407, 812, 978, 1203 |
| BseGI | GGATG | 4 cut(s) | 568, 988, 1183, 1213 |
| BseJI | GATNNNNATC | 1 cut(s) | 1212 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 813, 1065, 1154, 1166, 1209 |
| BseMII | CTCAG | 4 cut(s) | 594, 1077, 1152, 1156 |
| BseNI | ACTGG | 1 cut(s) | 1044 |
| BseRI | GAGGAG | 2 cut(s) | 713, 716 |
| BseSI | GKGCMC | 1 cut(s) | 634 |
| BseXI | GCAGC | 1 cut(s) | 923 |
| BseYI | CCCAGC | 2 cut(s) | 1063, 1096 |
| Bsh1236I | CGCG | 1 cut(s) | 1061 |
| BshFI | GGCC | 4 cut(s) | 5, 406, 806, 1079 |
| BshNI | GGYRCC | 1 cut(s) | 224 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1117 |
| BsiSI | CCGG | 4 cut(s) | 7, 1076, 1185, 1203 |
| BslFI | GGGAC | 1 cut(s) | 1079 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 813, 1065, 1154, 1166, 1209 |
| BsmAI | GTCTC | 4 cut(s) | 108, 1022, 1120, 1145 |
| BsmBI | CGTCTC | 1 cut(s) | 1022 |
| BsmFI | GGGAC | 1 cut(s) | 1079 |
| BsnI | GGCC | 4 cut(s) | 5, 406, 806, 1079 |
| Bso31I | GGTCTC | 2 cut(s) | 1120, 1145 |
| BsoBI | CYCGRG | 1 cut(s) | 1117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 634 |
| Bsp143I | GATC | 4 cut(s) | 243, 316, 436, 736 |
| Bsp19I | CCATGG | 1 cut(s) | 978 |
| BspACI | CCGC | 5 cut(s) | 91, 592, 1056, 1059, 1152 |
| BspANI | GGCC | 4 cut(s) | 5, 406, 806, 1079 |
| BspCNI | CTCAG | 4 cut(s) | 595, 1078, 1153, 1155 |
| BspFNI | CGCG | 1 cut(s) | 1061 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 5 cut(s) | 226, 720, 1080, 1095, 1232 |
| BspOI | GCTAGC | 1 cut(s) | 467 |
| BspT107I | GGYRCC | 1 cut(s) | 224 |
| BspTNI | GGTCTC | 2 cut(s) | 1120, 1145 |
| BsrFI | RCCGGY | 2 cut(s) | 1075, 1184 |
| BsrI | ACTGG | 1 cut(s) | 1044 |
| BssAI | RCCGGY | 2 cut(s) | 1075, 1184 |
| BssECI | CCNNGG | 5 cut(s) | 118, 407, 812, 978, 1203 |
| BssMI | GATC | 4 cut(s) | 243, 316, 436, 736 |
| BssT1I | CCWWGG | 3 cut(s) | 118, 407, 978 |
| Bst2UI | CCWGG | 5 cut(s) | 388, 771, 813, 1022, 1149 |
| BstC8I | GCNNGC | 3 cut(s) | 465, 1186, 1221 |
| BstDEI | CTNAG | 6 cut(s) | 218, 528, 603, 1086, 1142, 1161 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1152, 1164 |
| BstF5I | GGATG | 4 cut(s) | 568, 988, 1183, 1213 |
| BstFNI | CGCG | 1 cut(s) | 1061 |
| BstHHI | GCGC | 2 cut(s) | 12, 1063 |
| BstKTI | GATC | 4 cut(s) | 246, 319, 439, 739 |
| BstMAI | GTCTC | 4 cut(s) | 108, 1022, 1120, 1145 |
| BstMBI | GATC | 4 cut(s) | 243, 316, 436, 736 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 1130 |
| BstNI | CCWGG | 5 cut(s) | 388, 771, 813, 1022, 1149 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstSCI | CCNGG | 7 cut(s) | 5, 386, 769, 811, 1020, 1147, 1202 |
| BstSLI | GKGCMC | 1 cut(s) | 634 |
| BstUI | CGCG | 1 cut(s) | 1061 |
| BstV1I | GCAGC | 1 cut(s) | 923 |
| BstV2I | GAAGAC | 1 cut(s) | 980 |
| BstX2I | RGATCY | 2 cut(s) | 436, 736 |
| BstYI | RGATCY | 2 cut(s) | 436, 736 |
| BsuRI | GGCC | 4 cut(s) | 5, 406, 806, 1079 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtgZI | GCGATG | 1 cut(s) | 1203 |
| BtsCI | GGATG | 4 cut(s) | 568, 988, 1183, 1213 |
| BtsI | GCAGTG | 1 cut(s) | 825 |
| BtsIMutI | CAGTG | 1 cut(s) | 825 |
| Cac8I | GCNNGC | 3 cut(s) | 465, 1186, 1221 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CfoI | GCGC | 2 cut(s) | 12, 1063 |
| Cfr10I | RCCGGY | 2 cut(s) | 1075, 1184 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 756, 1078, 1093, 1157 |
| CseI | GACGC | 2 cut(s) | 9, 873 |
| Csp6I | GTAC | 4 cut(s) | 115, 156, 532, 1027 |
| CviAII | CATG | 4 cut(s) | 107, 443, 979, 1040 |
| CviQI | GTAC | 4 cut(s) | 115, 156, 532, 1027 |
| DdeI | CTNAG | 6 cut(s) | 218, 528, 603, 1086, 1142, 1161 |
| DpnI | GATC | 4 cut(s) | 245, 318, 438, 738 |
| DpnII | GATC | 4 cut(s) | 243, 316, 436, 736 |
| EciI | GGCGGA | 2 cut(s) | 607, 1167 |
| Eco130I | CCWWGG | 3 cut(s) | 118, 407, 978 |
| Eco31I | GGTCTC | 2 cut(s) | 1120, 1145 |
| Eco47I | GGWCC | 3 cut(s) | 756, 1093, 1157 |
| Eco57I | CTGAAG | 1 cut(s) | 1209 |
| Eco88I | CYCGRG | 1 cut(s) | 1117 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1152, 1164 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1093, 1157 |
| EcoRII | CCWGG | 5 cut(s) | 386, 769, 811, 1020, 1147 |
| EcoT14I | CCWWGG | 3 cut(s) | 118, 407, 978 |
| ErhI | CCWWGG | 3 cut(s) | 118, 407, 978 |
| Esp3I | CGTCTC | 1 cut(s) | 1022 |
| FaeI | CATG | 4 cut(s) | 110, 446, 982, 1043 |
| FaqI | GGGAC | 1 cut(s) | 1079 |
| FatI | CATG | 4 cut(s) | 106, 442, 978, 1039 |
| FauNDI | CATATG | 2 cut(s) | 133, 274 |
| FbaI | TGATCA | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 2 cut(s) | 912, 1059 |
| FokI | GGATG | 4 cut(s) | 555, 995, 1190, 1220 |
| Fsp4HI | GCNGC | 2 cut(s) | 912, 1059 |
| FspBI | CTAG | 6 cut(s) | 153, 464, 609, 620, 840, 846 |
| GlaI | GCGC | 2 cut(s) | 11, 1062 |
| GluI | GCNGC | 2 cut(s) | 912, 1059 |
| GsaI | CCCAGC | 2 cut(s) | 1067, 1100 |
| GsuI | CTGGAG | 1 cut(s) | 1004 |
| HaeIII | GGCC | 4 cut(s) | 5, 406, 806, 1079 |
| HapII | CCGG | 4 cut(s) | 7, 1076, 1185, 1203 |
| HgaI | GACGC | 2 cut(s) | 9, 873 |
| HhaI | GCGC | 2 cut(s) | 12, 1063 |
| Hin1II | CATG | 4 cut(s) | 110, 446, 982, 1043 |
| Hin6I | GCGC | 2 cut(s) | 10, 1061 |
| HinP1I | GCGC | 2 cut(s) | 10, 1061 |
| HinfI | GANTC | 5 cut(s) | 101, 184, 429, 687, 1213 |
| HpaII | CCGG | 4 cut(s) | 7, 1076, 1185, 1203 |
| HphI | GGTGA | 2 cut(s) | 47, 567 |
| Hpy166II | GTNNAC | 2 cut(s) | 759, 988 |
| Hpy188I | TCNGA | 6 cut(s) | 25, 46, 189, 434, 604, 1145 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 173, 539, 1160 |
| Hpy8I | GTNNAC | 2 cut(s) | 759, 988 |
| Hpy99I | CGWCG | 1 cut(s) | 25 |
| HpyAV | CCTTC | 6 cut(s) | 135, 410, 588, 784, 937, 1084 |
| HpyCH4IV | ACGT | 1 cut(s) | 634 |
| HpyCH4V | TGCA | 3 cut(s) | 335, 712, 856 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 1130 |
| HpyF3I | CTNAG | 6 cut(s) | 218, 528, 603, 1086, 1142, 1161 |
| HpySE526I | ACGT | 1 cut(s) | 634 |
| Hsp92II | CATG | 4 cut(s) | 110, 446, 982, 1043 |
| HspAI | GCGC | 2 cut(s) | 10, 1061 |
| KroI | GCCGGC | 1 cut(s) | 1184 |
| KroNI | GCCGGC | 1 cut(s) | 1186 |
| Ksp22I | TGATCA | 1 cut(s) | 243 |
| Kzo9I | GATC | 4 cut(s) | 243, 316, 436, 736 |
| LmnI | GCTCC | 1 cut(s) | 1230 |
| Lsp1109I | GCAGC | 1 cut(s) | 923 |
| LweI | GCATC | 2 cut(s) | 1171, 1189 |
| MaeI | CTAG | 6 cut(s) | 153, 464, 609, 620, 840, 846 |
| MaeII | ACGT | 1 cut(s) | 634 |
| MaeIII | GTNAC | 1 cut(s) | 1046 |
| MalI | GATC | 4 cut(s) | 245, 318, 438, 738 |
| MboI | GATC | 4 cut(s) | 243, 316, 436, 736 |
| MboII | GAAGA | 3 cut(s) | 311, 828, 985 |
| MflI | RGATCY | 2 cut(s) | 436, 736 |
| MhlI | GDGCHC | 1 cut(s) | 634 |
| MlyI | GAGTC | 2 cut(s) | 110, 681 |
| MmeI | TCCRAC | 4 cut(s) | 24, 118, 458, 780 |
| MroNI | GCCGGC | 1 cut(s) | 1184 |
| MseI | TTAA | 7 cut(s) | 66, 75, 296, 450, 672, 692, 924 |
| MslI | CAYNNNNRTG | 1 cut(s) | 983 |
| MspI | CCGG | 4 cut(s) | 7, 1076, 1185, 1203 |
| MspR9I | CCNGG | 7 cut(s) | 7, 388, 771, 813, 1022, 1149, 1204 |
| MvaI | CCWGG | 5 cut(s) | 388, 771, 813, 1022, 1149 |
| MvnI | CGCG | 1 cut(s) | 1061 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 1130 |
| NaeI | GCCGGC | 1 cut(s) | 1186 |
| NciI | CCSGG | 2 cut(s) | 7, 1204 |
| NcoI | CCATGG | 1 cut(s) | 978 |
| NdeI | CATATG | 2 cut(s) | 133, 274 |
| NdeII | GATC | 4 cut(s) | 243, 316, 436, 736 |
| NgoMIV | GCCGGC | 1 cut(s) | 1184 |
| NheI | GCTAGC | 1 cut(s) | 463 |
| NlaIII | CATG | 4 cut(s) | 110, 446, 982, 1043 |
| NlaIV | GGNNCC | 5 cut(s) | 226, 720, 1080, 1095, 1232 |
| NspI | RCATGY | 1 cut(s) | 446 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PdiI | GCCGGC | 1 cut(s) | 1186 |
| PfeI | GAWTC | 3 cut(s) | 184, 429, 1213 |
| PflFI | GACNNNGTC | 1 cut(s) | 1112 |
| PfoI | TCCNGGA | 1 cut(s) | 1020 |
| PkrI | GCNGC | 2 cut(s) | 913, 1060 |
| PleI | GAGTC | 2 cut(s) | 109, 681 |
| PpsI | GAGTC | 2 cut(s) | 109, 681 |
| PpuMI | RGGWCCY | 2 cut(s) | 1093, 1157 |
| Psp5II | RGGWCCY | 2 cut(s) | 1093, 1157 |
| Psp6I | CCWGG | 5 cut(s) | 386, 769, 811, 1020, 1147 |
| PspFI | CCCAGC | 2 cut(s) | 1063, 1096 |
| PspGI | CCWGG | 5 cut(s) | 386, 769, 811, 1020, 1147 |
| PspN4I | GGNNCC | 5 cut(s) | 226, 720, 1080, 1095, 1232 |
| PspPI | GGNCC | 5 cut(s) | 4, 756, 1078, 1093, 1157 |
| PspPPI | RGGWCCY | 2 cut(s) | 1093, 1157 |
| PsuI | RGATCY | 2 cut(s) | 436, 736 |
| PsyI | GACNNNGTC | 1 cut(s) | 1112 |
| RsaI | GTAC | 4 cut(s) | 116, 157, 533, 1028 |
| RsaNI | GTAC | 4 cut(s) | 115, 156, 532, 1027 |
| RseI | CAYNNNNRTG | 1 cut(s) | 983 |
| SaqAI | TTAA | 7 cut(s) | 66, 75, 296, 450, 672, 692, 924 |
| SatI | GCNGC | 2 cut(s) | 912, 1059 |
| Sau3AI | GATC | 4 cut(s) | 243, 316, 436, 736 |
| Sau96I | GGNCC | 5 cut(s) | 4, 756, 1078, 1093, 1157 |
| ScaI | AGTACT | 2 cut(s) | 157, 533 |
| SchI | GAGTC | 2 cut(s) | 110, 681 |
| ScrFI | CCNGG | 7 cut(s) | 7, 388, 771, 813, 1022, 1149, 1204 |
| SduI | GDGCHC | 1 cut(s) | 634 |
| SfaNI | GCATC | 2 cut(s) | 1171, 1189 |
| SinI | GGWCC | 3 cut(s) | 756, 1093, 1157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 983 |
| SmlI | CTYRAG | 1 cut(s) | 1134 |
| SmoI | CTYRAG | 1 cut(s) | 1134 |
| SpeI | ACTAGT | 1 cut(s) | 152 |
| SsiI | CCGC | 5 cut(s) | 91, 592, 1056, 1059, 1152 |
| SspMI | CTAG | 6 cut(s) | 153, 464, 609, 620, 840, 846 |
| StyD4I | CCNGG | 7 cut(s) | 5, 386, 769, 811, 1020, 1147, 1202 |
| StyI | CCWWGG | 3 cut(s) | 118, 407, 978 |
| TaiI | ACGT | 1 cut(s) | 637 |
| TatI | WGTACW | 2 cut(s) | 155, 531 |
| TauI | GCSGC | 1 cut(s) | 1061 |
| TfiI | GAWTC | 3 cut(s) | 184, 429, 1213 |
| Tru1I | TTAA | 7 cut(s) | 66, 75, 296, 450, 672, 692, 924 |
| Tru9I | TTAA | 7 cut(s) | 66, 75, 296, 450, 672, 692, 924 |
| TscAI | CASTG | 1 cut(s) | 832 |
| TseI | GCWGC | 1 cut(s) | 911 |
| TspDTI | ATGAA | 4 cut(s) | 365, 375, 492, 570 |
| TspGWI | ACGGA | 1 cut(s) | 770 |
| TspRI | CASTG | 1 cut(s) | 832 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1112 |
| VpaK11BI | GGWCC | 3 cut(s) | 756, 1093, 1157 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1152, 1164 |
| XapI | RAATTY | 3 cut(s) | 304, 372, 499 |
| XceI | RCATGY | 1 cut(s) | 446 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1060 |
| XspI | CTAG | 6 cut(s) | 153, 464, 609, 620, 840, 846 |
| ZrmI | AGTACT | 2 cut(s) | 157, 533 |