Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1280 |
| AccII | CGCG | 1 cut(s) | 655 |
| AciI | CCGC | 2 cut(s) | 655, 1061 |
| AclWI | GGATC | 2 cut(s) | 549, 1250 |
| AcoI | YGGCCR | 1 cut(s) | 1403 |
| AcsI | RAATTY | 4 cut(s) | 456, 1077, 1340, 1361 |
| AcuI | CTGAAG | 1 cut(s) | 986 |
| AcvI | CACGTG | 1 cut(s) | 1385 |
| AdeI | CACNNNGTG | 2 cut(s) | 809, 932 |
| AfaI | GTAC | 5 cut(s) | 273, 362, 985, 1095, 1415 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1020, 1153, 1154 |
| AflII | CTTAAG | 1 cut(s) | 509 |
| AflIII | ACRYGT | 1 cut(s) | 155 |
| AgsI | TTSAA | 8 cut(s) | 203, 299, 909, 923, 1033, 1179, 1242, 1316 |
| AjnI | CCWGG | 1 cut(s) | 868 |
| AluBI | AGCT | 4 cut(s) | 785, 1010, 1018, 1250 |
| AluI | AGCT | 4 cut(s) | 785, 1010, 1018, 1250 |
| Alw26I | GTCTC | 2 cut(s) | 2, 241 |
| AlwI | GGATC | 2 cut(s) | 549, 1250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 824 |
| AoxI | GGCC | 3 cut(s) | 704, 1288, 1403 |
| ApeKI | GCWGC | 4 cut(s) | 761, 959, 1070, 1136 |
| ApoI | RAATTY | 4 cut(s) | 456, 1077, 1340, 1361 |
| AseI | ATTAAT | 1 cut(s) | 1182 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 819 |
| AspLEI | GCGC | 2 cut(s) | 655, 867 |
| AspS9I | GGNCC | 2 cut(s) | 1063, 1289 |
| AsuHPI | GGTGA | 1 cut(s) | 1055 |
| AvaII | GGWCC | 1 cut(s) | 1063 |
| BalI | TGGCCA | 1 cut(s) | 1405 |
| BbrPI | CACGTG | 1 cut(s) | 1385 |
| BbvI | GCAGC | 4 cut(s) | 748, 946, 1082, 1123 |
| BccI | CCATC | 2 cut(s) | 314, 1205 |
| BciT130I | CCWGG | 1 cut(s) | 870 |
| BcoDI | GTCTC | 2 cut(s) | 2, 241 |
| BfaI | CTAG | 4 cut(s) | 117, 807, 953, 1332 |
| BfmI | CTRYAG | 1 cut(s) | 1251 |
| BfoI | RGCGCY | 1 cut(s) | 868 |
| BfrI | CTTAAG | 1 cut(s) | 509 |
| BglII | AGATCT | 1 cut(s) | 419 |
| BisI | GCNGC | 4 cut(s) | 762, 960, 1071, 1137 |
| BlsI | GCNGC | 4 cut(s) | 763, 961, 1072, 1138 |
| Bme1390I | CCNGG | 1 cut(s) | 870 |
| Bme18I | GGWCC | 1 cut(s) | 1063 |
| BmgT120I | GGNCC | 2 cut(s) | 1063, 1289 |
| BmiI | GGNNCC | 2 cut(s) | 1144, 1291 |
| BmrFI | CCNGG | 1 cut(s) | 870 |
| BmsI | GCATC | 2 cut(s) | 342, 1369 |
| BpuEI | CTTGAG | 2 cut(s) | 87, 831 |
| BsaAI | YACGTR | 1 cut(s) | 1385 |
| BsaBI | GATNNNNATC | 2 cut(s) | 250, 798 |
| BsaJI | CCNNGG | 1 cut(s) | 868 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 882, 912 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1020, 1153, 1154 |
| Bse1I | ACTGG | 2 cut(s) | 25, 818 |
| Bse3DI | GCAATG | 1 cut(s) | 1225 |
| Bse8I | GATNNNNATC | 2 cut(s) | 250, 798 |
| BseBI | CCWGG | 1 cut(s) | 870 |
| BseDI | CCNNGG | 1 cut(s) | 868 |
| BseGI | GGATG | 2 cut(s) | 325, 1216 |
| BseJI | GATNNNNATC | 2 cut(s) | 250, 798 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1020, 1153, 1154 |
| BseMI | GCAATG | 1 cut(s) | 1225 |
| BseMII | CTCAG | 4 cut(s) | 453, 765, 1260, 1344 |
| BseNI | ACTGG | 2 cut(s) | 25, 818 |
| BseRI | GAGGAG | 1 cut(s) | 90 |
| BseXI | GCAGC | 4 cut(s) | 748, 946, 1082, 1123 |
| BseYI | CCCAGC | 1 cut(s) | 1018 |
| BsgI | GTGCAG | 1 cut(s) | 945 |
| Bsh1236I | CGCG | 1 cut(s) | 655 |
| BshFI | GGCC | 3 cut(s) | 706, 1290, 1405 |
| BslFI | GGGAC | 2 cut(s) | 84, 1170 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1020, 1153, 1154 |
| BsmAI | GTCTC | 2 cut(s) | 2, 241 |
| BsmFI | GGGAC | 2 cut(s) | 84, 1170 |
| BsnI | GGCC | 3 cut(s) | 706, 1290, 1405 |
| Bsp143I | GATC | 3 cut(s) | 419, 541, 1255 |
| BspACI | CCGC | 2 cut(s) | 655, 1061 |
| BspANI | GGCC | 3 cut(s) | 706, 1290, 1405 |
| BspCNI | CTCAG | 4 cut(s) | 452, 766, 1259, 1345 |
| BspFNI | CGCG | 1 cut(s) | 655 |
| BspHI | TCATGA | 1 cut(s) | 1426 |
| BspLI | GGNNCC | 2 cut(s) | 1144, 1291 |
| BspPI | GGATC | 2 cut(s) | 549, 1250 |
| BspTI | CTTAAG | 1 cut(s) | 509 |
| BsrDI | GCAATG | 1 cut(s) | 1225 |
| BsrI | ACTGG | 2 cut(s) | 25, 818 |
| BssECI | CCNNGG | 1 cut(s) | 868 |
| BssMI | GATC | 3 cut(s) | 419, 541, 1255 |
| BssNAI | GTATAC | 1 cut(s) | 1281 |
| Bst1107I | GTATAC | 1 cut(s) | 1281 |
| Bst2UI | CCWGG | 1 cut(s) | 870 |
| Bst4CI | ACNGT | 2 cut(s) | 13, 1270 |
| Bst6I | CTCTTC | 2 cut(s) | 102, 528 |
| BstAFI | CTTAAG | 1 cut(s) | 509 |
| BstBAI | YACGTR | 1 cut(s) | 1385 |
| BstDEI | CTNAG | 9 cut(s) | 6, 327, 439, 477, 529, 774, 786, 1246, 1353 |
| BstF5I | GGATG | 2 cut(s) | 325, 1216 |
| BstFNI | CGCG | 1 cut(s) | 655 |
| BstH2I | RGCGCY | 1 cut(s) | 868 |
| BstHHI | GCGC | 2 cut(s) | 655, 867 |
| BstKTI | GATC | 3 cut(s) | 422, 544, 1258 |
| BstMAI | GTCTC | 2 cut(s) | 2, 241 |
| BstMBI | GATC | 3 cut(s) | 419, 541, 1255 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 42, 770, 968, 1067 |
| BstNI | CCWGG | 1 cut(s) | 870 |
| BstNSI | RCATGY | 2 cut(s) | 159, 565 |
| BstSCI | CCNGG | 1 cut(s) | 868 |
| BstSFI | CTRYAG | 1 cut(s) | 1251 |
| BstUI | CGCG | 1 cut(s) | 655 |
| BstV1I | GCAGC | 4 cut(s) | 748, 946, 1082, 1123 |
| BstX2I | RGATCY | 2 cut(s) | 419, 1255 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 714 |
| BstYI | RGATCY | 2 cut(s) | 419, 1255 |
| BstZ17I | GTATAC | 1 cut(s) | 1281 |
| BsuRI | GGCC | 3 cut(s) | 706, 1290, 1405 |
| BtsCI | GGATG | 2 cut(s) | 325, 1216 |
| BtsIMutI | CAGTG | 2 cut(s) | 962, 1350 |
| CaiI | CAGNNNCTG | 1 cut(s) | 824 |
| CciI | TCATGA | 1 cut(s) | 1426 |
| CfoI | GCGC | 2 cut(s) | 655, 867 |
| Cfr13I | GGNCC | 2 cut(s) | 1063, 1289 |
| Csp6I | GTAC | 5 cut(s) | 272, 361, 984, 1094, 1414 |
| CviAII | CATG | 8 cut(s) | 156, 562, 728, 1067, 1097, 1274, 1427, 1437 |
| CviQI | GTAC | 5 cut(s) | 272, 361, 984, 1094, 1414 |
| DdeI | CTNAG | 9 cut(s) | 6, 327, 439, 477, 529, 774, 786, 1246, 1353 |
| DpnI | GATC | 3 cut(s) | 421, 543, 1257 |
| DpnII | GATC | 3 cut(s) | 419, 541, 1255 |
| DraIII | CACNNNGTG | 2 cut(s) | 809, 932 |
| EaeI | YGGCCR | 1 cut(s) | 1403 |
| Eam1104I | CTCTTC | 2 cut(s) | 102, 528 |
| EarI | CTCTTC | 2 cut(s) | 102, 528 |
| Eco32I | GATATC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 1063 |
| Eco57I | CTGAAG | 1 cut(s) | 986 |
| Eco72I | CACGTG | 1 cut(s) | 1385 |
| EcoRII | CCWGG | 1 cut(s) | 868 |
| EcoRV | GATATC | 1 cut(s) | 373 |
| FaeI | CATG | 8 cut(s) | 159, 565, 731, 1070, 1100, 1277, 1430, 1440 |
| FaqI | GGGAC | 2 cut(s) | 84, 1170 |
| FatI | CATG | 8 cut(s) | 155, 561, 727, 1066, 1096, 1273, 1426, 1436 |
| FblI | GTMKAC | 1 cut(s) | 1280 |
| Fnu4HI | GCNGC | 4 cut(s) | 762, 960, 1071, 1137 |
| FokI | GGATG | 2 cut(s) | 332, 1223 |
| Fsp4HI | GCNGC | 4 cut(s) | 762, 960, 1071, 1137 |
| FspBI | CTAG | 4 cut(s) | 117, 807, 953, 1332 |
| GlaI | GCGC | 2 cut(s) | 654, 866 |
| GluI | GCNGC | 4 cut(s) | 762, 960, 1071, 1137 |
| GsaI | CCCAGC | 1 cut(s) | 1022 |
| HaeII | RGCGCY | 1 cut(s) | 868 |
| HaeIII | GGCC | 3 cut(s) | 706, 1290, 1405 |
| HhaI | GCGC | 2 cut(s) | 655, 867 |
| Hin1II | CATG | 8 cut(s) | 159, 565, 731, 1070, 1100, 1277, 1430, 1440 |
| Hin6I | GCGC | 2 cut(s) | 653, 865 |
| HinP1I | GCGC | 2 cut(s) | 653, 865 |
| HincII | GTYRAC | 2 cut(s) | 445, 474 |
| HindII | GTYRAC | 2 cut(s) | 445, 474 |
| HinfI | GANTC | 9 cut(s) | 53, 92, 112, 246, 464, 619, 637, 799, 844 |
| HphI | GGTGA | 1 cut(s) | 1055 |
| Hpy166II | GTNNAC | 5 cut(s) | 96, 445, 474, 526, 1281 |
| Hpy188I | TCNGA | 4 cut(s) | 79, 91, 433, 568 |
| Hpy188III | TCNNGA | 7 cut(s) | 104, 349, 461, 686, 1118, 1155, 1427 |
| Hpy8I | GTNNAC | 5 cut(s) | 96, 445, 474, 526, 1281 |
| HpyAV | CCTTC | 5 cut(s) | 397, 915, 961, 1185, 1424 |
| HpyCH4III | ACNGT | 2 cut(s) | 13, 1270 |
| HpyCH4IV | ACGT | 1 cut(s) | 1384 |
| HpyCH4V | TGCA | 9 cut(s) | 163, 355, 397, 962, 1070, 1112, 1194, 1273, 1382 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 42, 770, 968, 1067 |
| HpyF3I | CTNAG | 9 cut(s) | 6, 327, 439, 477, 529, 774, 786, 1246, 1353 |
| HpySE526I | ACGT | 1 cut(s) | 1384 |
| Hsp92II | CATG | 8 cut(s) | 159, 565, 731, 1070, 1100, 1277, 1430, 1440 |
| HspAI | GCGC | 2 cut(s) | 653, 865 |
| Kzo9I | GATC | 3 cut(s) | 419, 541, 1255 |
| LmnI | GCTCC | 2 cut(s) | 862, 890 |
| Lsp1109I | GCAGC | 4 cut(s) | 748, 946, 1082, 1123 |
| LweI | GCATC | 2 cut(s) | 342, 1369 |
| MaeI | CTAG | 4 cut(s) | 117, 807, 953, 1332 |
| MaeII | ACGT | 1 cut(s) | 1384 |
| MaeIII | GTNAC | 3 cut(s) | 313, 377, 898 |
| MalI | GATC | 3 cut(s) | 421, 543, 1257 |
| MboI | GATC | 3 cut(s) | 419, 541, 1255 |
| MboII | GAAGA | 5 cut(s) | 119, 545, 748, 824, 1328 |
| MfeI | CAATTG | 1 cut(s) | 1395 |
| MflI | RGATCY | 2 cut(s) | 419, 1255 |
| MlsI | TGGCCA | 1 cut(s) | 1405 |
| MluNI | TGGCCA | 1 cut(s) | 1405 |
| MlyI | GAGTC | 3 cut(s) | 101, 646, 838 |
| MmeI | TCCRAC | 2 cut(s) | 639, 975 |
| Mox20I | TGGCCA | 1 cut(s) | 1405 |
| MroXI | GAANNNNTTC | 1 cut(s) | 819 |
| MscI | TGGCCA | 1 cut(s) | 1405 |
| MseI | TTAA | 5 cut(s) | 291, 510, 720, 1004, 1182 |
| Msp20I | TGGCCA | 1 cut(s) | 1405 |
| MspCI | CTTAAG | 1 cut(s) | 509 |
| MspR9I | CCNGG | 1 cut(s) | 870 |
| MunI | CAATTG | 1 cut(s) | 1395 |
| MvaI | CCWGG | 1 cut(s) | 870 |
| MvnI | CGCG | 1 cut(s) | 655 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 42, 770, 968, 1067 |
| NdeII | GATC | 3 cut(s) | 419, 541, 1255 |
| NlaIII | CATG | 8 cut(s) | 159, 565, 731, 1070, 1100, 1277, 1430, 1440 |
| NlaIV | GGNNCC | 2 cut(s) | 1144, 1291 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NspI | RCATGY | 2 cut(s) | 159, 565 |
| PagI | TCATGA | 1 cut(s) | 1426 |
| PciI | ACATGT | 1 cut(s) | 155 |
| PdmI | GAANNNNTTC | 1 cut(s) | 819 |
| PfeI | GAWTC | 6 cut(s) | 53, 112, 246, 464, 619, 799 |
| PkrI | GCNGC | 4 cut(s) | 763, 961, 1072, 1138 |
| PleI | GAGTC | 3 cut(s) | 100, 645, 838 |
| PmaCI | CACGTG | 1 cut(s) | 1385 |
| PmlI | CACGTG | 1 cut(s) | 1385 |
| PpsI | GAGTC | 3 cut(s) | 100, 645, 838 |
| Ppu21I | YACGTR | 1 cut(s) | 1385 |
| PscI | ACATGT | 1 cut(s) | 155 |
| PshBI | ATTAAT | 1 cut(s) | 1182 |
| Psp6I | CCWGG | 1 cut(s) | 868 |
| PspCI | CACGTG | 1 cut(s) | 1385 |
| PspFI | CCCAGC | 1 cut(s) | 1018 |
| PspGI | CCWGG | 1 cut(s) | 868 |
| PspN4I | GGNNCC | 2 cut(s) | 1144, 1291 |
| PspPI | GGNCC | 2 cut(s) | 1063, 1289 |
| PstNI | CAGNNNCTG | 1 cut(s) | 824 |
| PsuI | RGATCY | 2 cut(s) | 419, 1255 |
| RsaI | GTAC | 5 cut(s) | 273, 362, 985, 1095, 1415 |
| RsaNI | GTAC | 5 cut(s) | 272, 361, 984, 1094, 1414 |
| SaqAI | TTAA | 5 cut(s) | 291, 510, 720, 1004, 1182 |
| SatI | GCNGC | 4 cut(s) | 762, 960, 1071, 1137 |
| Sau3AI | GATC | 3 cut(s) | 419, 541, 1255 |
| Sau96I | GGNCC | 2 cut(s) | 1063, 1289 |
| SchI | GAGTC | 3 cut(s) | 101, 646, 838 |
| ScrFI | CCNGG | 1 cut(s) | 870 |
| SfaNI | GCATC | 2 cut(s) | 342, 1369 |
| SfcI | CTRYAG | 1 cut(s) | 1251 |
| SinI | GGWCC | 1 cut(s) | 1063 |
| SmlI | CTYRAG | 3 cut(s) | 102, 509, 846 |
| SmoI | CTYRAG | 3 cut(s) | 102, 509, 846 |
| SsiI | CCGC | 2 cut(s) | 655, 1061 |
| SspMI | CTAG | 4 cut(s) | 117, 807, 953, 1332 |
| StyD4I | CCNGG | 1 cut(s) | 868 |
| TaaI | ACNGT | 2 cut(s) | 13, 1270 |
| TaiI | ACGT | 1 cut(s) | 1387 |
| TaqI | TCGA | 3 cut(s) | 467, 640, 1117 |
| TatI | WGTACW | 3 cut(s) | 360, 1093, 1413 |
| TfiI | GAWTC | 6 cut(s) | 53, 112, 246, 464, 619, 799 |
| Tru1I | TTAA | 5 cut(s) | 291, 510, 720, 1004, 1182 |
| Tru9I | TTAA | 5 cut(s) | 291, 510, 720, 1004, 1182 |
| TscAI | CASTG | 2 cut(s) | 969, 1357 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 4 cut(s) | 761, 959, 1070, 1136 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 6 cut(s) | 147, 225, 379, 681, 1236, 1415 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| TspRI | CASTG | 2 cut(s) | 969, 1357 |
| Vha464I | CTTAAG | 1 cut(s) | 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 1063 |
| VspI | ATTAAT | 1 cut(s) | 1182 |
| XapI | RAATTY | 4 cut(s) | 456, 1077, 1340, 1361 |
| XceI | RCATGY | 2 cut(s) | 159, 565 |
| XmiI | GTMKAC | 1 cut(s) | 1280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 819 |
| XspI | CTAG | 4 cut(s) | 117, 807, 953, 1332 |