Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 838 |
| AatII | GACGTC | 1 cut(s) | 317 |
| Acc36I | ACCTGC | 1 cut(s) | 838 |
| AccB1I | GGYRCC | 1 cut(s) | 386 |
| AccBSI | CCGCTC | 1 cut(s) | 688 |
| AccI | GTMKAC | 4 cut(s) | 136, 236, 317, 862 |
| AciI | CCGC | 1 cut(s) | 688 |
| AclI | AACGTT | 1 cut(s) | 207 |
| AclWI | GGATC | 1 cut(s) | 53 |
| AcsI | RAATTY | 2 cut(s) | 755, 769 |
| AcyI | GRCGYC | 1 cut(s) | 314 |
| AdeI | CACNNNGTG | 1 cut(s) | 456 |
| AfaI | GTAC | 2 cut(s) | 252, 579 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 833, 941 |
| AflIII | ACRYGT | 1 cut(s) | 124 |
| AgsI | TTSAA | 6 cut(s) | 89, 767, 775, 888, 917, 928 |
| AjnI | CCWGG | 2 cut(s) | 142, 978 |
| AluBI | AGCT | 8 cut(s) | 107, 166, 186, 355, 421, 794, 812, 839 |
| AluI | AGCT | 8 cut(s) | 107, 166, 186, 355, 421, 794, 812, 839 |
| Alw21I | GWGCWC | 2 cut(s) | 188, 880 |
| Alw26I | GTCTC | 1 cut(s) | 1002 |
| AlwI | GGATC | 1 cut(s) | 53 |
| ApoI | RAATTY | 2 cut(s) | 755, 769 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 341, 373 |
| AseI | ATTAAT | 1 cut(s) | 633 |
| AspA2I | CCTAGG | 1 cut(s) | 280 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AsuHPI | GGTGA | 3 cut(s) | 60, 68, 268 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| AvrII | CCTAGG | 1 cut(s) | 280 |
| BanI | GGYRCC | 1 cut(s) | 386 |
| BanII | GRGCYC | 1 cut(s) | 188 |
| BbsI | GAAGAC | 2 cut(s) | 278, 317 |
| Bbv12I | GWGCWC | 2 cut(s) | 188, 880 |
| BccI | CCATC | 1 cut(s) | 1009 |
| BciT130I | CCWGG | 2 cut(s) | 144, 980 |
| BciVI | GTATCC | 1 cut(s) | 211 |
| BcoDI | GTCTC | 1 cut(s) | 1002 |
| BfaI | CTAG | 2 cut(s) | 281, 959 |
| BfmI | CTRYAG | 2 cut(s) | 5, 831 |
| BfuAI | ACCTGC | 1 cut(s) | 838 |
| BfuI | GTATCC | 1 cut(s) | 211 |
| BlnI | CCTAGG | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 2 cut(s) | 144, 980 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmiI | GGNNCC | 1 cut(s) | 388 |
| BmrFI | CCNGG | 2 cut(s) | 144, 980 |
| BmsI | GCATC | 1 cut(s) | 703 |
| BpiI | GAAGAC | 2 cut(s) | 278, 317 |
| BpuEI | CTTGAG | 2 cut(s) | 443, 555 |
| BsaAI | YACGTR | 1 cut(s) | 581 |
| BsaHI | GRCGYC | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 3 cut(s) | 17, 280, 979 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 833, 941 |
| Bse1I | ACTGG | 1 cut(s) | 348 |
| BseBI | CCWGG | 2 cut(s) | 144, 980 |
| BseDI | CCNNGG | 3 cut(s) | 17, 280, 979 |
| BseGI | GGATG | 1 cut(s) | 718 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 833, 941 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseNI | ACTGG | 1 cut(s) | 348 |
| BseRI | GAGGAG | 2 cut(s) | 239, 558 |
| BsgI | GTGCAG | 1 cut(s) | 458 |
| BshNI | GGYRCC | 1 cut(s) | 386 |
| BsiHKAI | GWGCWC | 2 cut(s) | 188, 880 |
| BsiSI | CCGG | 1 cut(s) | 390 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 833, 941 |
| BsmAI | GTCTC | 1 cut(s) | 1002 |
| BsmI | GAATGC | 1 cut(s) | 934 |
| Bsp1286I | GDGCHC | 2 cut(s) | 188, 880 |
| Bsp1407I | TGTACA | 1 cut(s) | 250 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BspACI | CCGC | 1 cut(s) | 688 |
| BspCNI | CTCAG | 1 cut(s) | 200 |
| BspLI | GGNNCC | 1 cut(s) | 388 |
| BspMAI | CTGCAG | 1 cut(s) | 835 |
| BspMI | ACCTGC | 1 cut(s) | 838 |
| BspPI | GGATC | 1 cut(s) | 53 |
| BspT107I | GGYRCC | 1 cut(s) | 386 |
| BsrBI | CCGCTC | 1 cut(s) | 688 |
| BsrGI | TGTACA | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 348 |
| BssECI | CCNNGG | 3 cut(s) | 17, 280, 979 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssNAI | GTATAC | 1 cut(s) | 137 |
| BssNI | GRCGYC | 1 cut(s) | 314 |
| BssT1I | CCWWGG | 1 cut(s) | 280 |
| Bst1107I | GTATAC | 1 cut(s) | 137 |
| Bst2UI | CCWGG | 2 cut(s) | 144, 980 |
| BstACI | GRCGYC | 1 cut(s) | 314 |
| BstAUI | TGTACA | 1 cut(s) | 250 |
| BstBAI | YACGTR | 1 cut(s) | 581 |
| BstC8I | GCNNGC | 2 cut(s) | 814, 848 |
| BstDEI | CTNAG | 3 cut(s) | 187, 497, 731 |
| BstEII | GGTNACC | 1 cut(s) | 641 |
| BstF5I | GGATG | 1 cut(s) | 718 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMAI | GTCTC | 1 cut(s) | 1002 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 830 |
| BstNI | CCWGG | 2 cut(s) | 144, 980 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstPI | GGTNACC | 1 cut(s) | 641 |
| BstSCI | CCNGG | 2 cut(s) | 142, 978 |
| BstSFI | CTRYAG | 2 cut(s) | 5, 831 |
| BstSNI | TACGTA | 1 cut(s) | 581 |
| BstV2I | GAAGAC | 2 cut(s) | 278, 317 |
| BstZ17I | GTATAC | 1 cut(s) | 137 |
| BsuI | GTATCC | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 718 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| BveI | ACCTGC | 1 cut(s) | 838 |
| Cac8I | GCNNGC | 2 cut(s) | 814, 848 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| CseI | GACGC | 1 cut(s) | 26 |
| Csp6I | GTAC | 2 cut(s) | 251, 578 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 279, 314 |
| CviAII | CATG | 3 cut(s) | 125, 269, 609 |
| CviQI | GTAC | 2 cut(s) | 251, 578 |
| DdeI | CTNAG | 3 cut(s) | 187, 497, 731 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| DraI | TTTAAA | 1 cut(s) | 549 |
| DraIII | CACNNNGTG | 1 cut(s) | 456 |
| Ecl136II | GAGCTC | 1 cut(s) | 186 |
| Eco105I | TACGTA | 1 cut(s) | 581 |
| Eco130I | CCWWGG | 1 cut(s) | 280 |
| Eco24I | GRGCYC | 1 cut(s) | 188 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| Eco53kI | GAGCTC | 1 cut(s) | 186 |
| Eco91I | GGTNACC | 1 cut(s) | 641 |
| EcoICRI | GAGCTC | 1 cut(s) | 186 |
| EcoO65I | GGTNACC | 1 cut(s) | 641 |
| EcoRII | CCWGG | 2 cut(s) | 142, 978 |
| EcoT14I | CCWWGG | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 128, 272, 612 |
| FatI | CATG | 3 cut(s) | 124, 268, 608 |
| FauI | CCCGC | 1 cut(s) | 681 |
| FauNDI | CATATG | 1 cut(s) | 940 |
| FblI | GTMKAC | 4 cut(s) | 136, 236, 317, 862 |
| FokI | GGATG | 1 cut(s) | 725 |
| FriOI | GRGCYC | 1 cut(s) | 188 |
| FspBI | CTAG | 2 cut(s) | 281, 959 |
| HapII | CCGG | 1 cut(s) | 390 |
| HgaI | GACGC | 1 cut(s) | 26 |
| Hin1I | GRCGYC | 1 cut(s) | 314 |
| Hin1II | CATG | 3 cut(s) | 128, 272, 612 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 419 |
| HinfI | GANTC | 4 cut(s) | 425, 446, 697, 995 |
| HpaI | GTTAAC | 1 cut(s) | 172 |
| HpaII | CCGG | 1 cut(s) | 390 |
| HphI | GGTGA | 3 cut(s) | 60, 68, 268 |
| Hpy166II | GTNNAC | 8 cut(s) | 137, 172, 237, 251, 318, 450, 486, 863 |
| Hpy188III | TCNNGA | 2 cut(s) | 429, 1009 |
| Hpy8I | GTNNAC | 8 cut(s) | 137, 172, 237, 251, 318, 450, 486, 863 |
| Hpy99I | CGWCG | 2 cut(s) | 42, 977 |
| HpyCH4IV | ACGT | 4 cut(s) | 207, 314, 580, 919 |
| HpyCH4V | TGCA | 5 cut(s) | 115, 439, 614, 833, 850 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 830 |
| HpyF3I | CTNAG | 3 cut(s) | 187, 497, 731 |
| HpySE526I | ACGT | 4 cut(s) | 207, 314, 580, 919 |
| Hsp92I | GRCGYC | 1 cut(s) | 314 |
| Hsp92II | CATG | 3 cut(s) | 128, 272, 612 |
| KspAI | GTTAAC | 1 cut(s) | 172 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LmnI | GCTCC | 4 cut(s) | 571, 836, 875, 937 |
| LweI | GCATC | 1 cut(s) | 703 |
| MaeI | CTAG | 2 cut(s) | 281, 959 |
| MaeII | ACGT | 4 cut(s) | 207, 314, 580, 919 |
| MaeIII | GTNAC | 3 cut(s) | 641, 724, 747 |
| MalI | GATC | 1 cut(s) | 60 |
| MbiI | CCGCTC | 1 cut(s) | 688 |
| MboI | GATC | 1 cut(s) | 58 |
| MboII | GAAGA | 4 cut(s) | 101, 278, 322, 647 |
| MhlI | GDGCHC | 2 cut(s) | 188, 880 |
| MluCI | AATT | 6 cut(s) | 147, 230, 321, 634, 755, 769 |
| MlyI | GAGTC | 3 cut(s) | 434, 455, 1004 |
| MmeI | TCCRAC | 2 cut(s) | 314, 423 |
| MnlI | CCTC | 9 cut(s) | 12, 35, 72, 145, 217, 220, 256, 579, 672 |
| MseI | TTAA | 6 cut(s) | 171, 324, 333, 380, 548, 633 |
| MspI | CCGG | 1 cut(s) | 390 |
| MspR9I | CCNGG | 2 cut(s) | 144, 980 |
| Mva1269I | GAATGC | 1 cut(s) | 934 |
| MvaI | CCWGG | 2 cut(s) | 144, 980 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 830 |
| NdeI | CATATG | 1 cut(s) | 940 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 3 cut(s) | 128, 272, 612 |
| NlaIV | GGNNCC | 1 cut(s) | 388 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PaqCI | CACCTGC | 1 cut(s) | 838 |
| PciI | ACATGT | 1 cut(s) | 124 |
| PctI | GAATGC | 1 cut(s) | 934 |
| PfeI | GAWTC | 1 cut(s) | 697 |
| PleI | GAGTC | 3 cut(s) | 433, 454, 1003 |
| PpsI | GAGTC | 3 cut(s) | 433, 454, 1003 |
| Ppu21I | YACGTR | 1 cut(s) | 581 |
| PscI | ACATGT | 1 cut(s) | 124 |
| PshBI | ATTAAT | 1 cut(s) | 633 |
| Psp124BI | GAGCTC | 1 cut(s) | 188 |
| Psp1406I | AACGTT | 1 cut(s) | 207 |
| Psp6I | CCWGG | 2 cut(s) | 142, 978 |
| PspEI | GGTNACC | 1 cut(s) | 641 |
| PspGI | CCWGG | 2 cut(s) | 142, 978 |
| PspN4I | GGNNCC | 1 cut(s) | 388 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| PstI | CTGCAG | 1 cut(s) | 835 |
| RsaI | GTAC | 2 cut(s) | 252, 579 |
| RsaNI | GTAC | 2 cut(s) | 251, 578 |
| SacI | GAGCTC | 1 cut(s) | 188 |
| SaqAI | TTAA | 6 cut(s) | 171, 324, 333, 380, 548, 633 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| SbfI | CCTGCAGG | 1 cut(s) | 835 |
| SchI | GAGTC | 3 cut(s) | 434, 455, 1004 |
| ScrFI | CCNGG | 2 cut(s) | 144, 980 |
| SdaI | CCTGCAGG | 1 cut(s) | 835 |
| SduI | GDGCHC | 2 cut(s) | 188, 880 |
| SfaNI | GCATC | 1 cut(s) | 703 |
| SfcI | CTRYAG | 2 cut(s) | 5, 831 |
| SinI | GGWCC | 1 cut(s) | 265 |
| SmlI | CTYRAG | 3 cut(s) | 422, 570, 1009 |
| SmoI | CTYRAG | 3 cut(s) | 422, 570, 1009 |
| SnaBI | TACGTA | 1 cut(s) | 581 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 835 |
| Sse9I | AATT | 6 cut(s) | 147, 230, 321, 634, 755, 769 |
| SsiI | CCGC | 1 cut(s) | 688 |
| SspI | AATATT | 1 cut(s) | 891 |
| SspMI | CTAG | 2 cut(s) | 281, 959 |
| SstI | GAGCTC | 1 cut(s) | 188 |
| StyD4I | CCNGG | 2 cut(s) | 142, 978 |
| StyI | CCWWGG | 1 cut(s) | 280 |
| TaiI | ACGT | 4 cut(s) | 210, 317, 583, 922 |
| TaqI | TCGA | 1 cut(s) | 40 |
| TasI | AATT | 6 cut(s) | 147, 230, 321, 634, 755, 769 |
| TatI | WGTACW | 1 cut(s) | 250 |
| TfiI | GAWTC | 1 cut(s) | 697 |
| Tru1I | TTAA | 6 cut(s) | 171, 324, 333, 380, 548, 633 |
| Tru9I | TTAA | 6 cut(s) | 171, 324, 333, 380, 548, 633 |
| TscAI | CASTG | 1 cut(s) | 195 |
| TspDTI | ATGAA | 3 cut(s) | 285, 597, 927 |
| TspRI | CASTG | 1 cut(s) | 195 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| VspI | ATTAAT | 1 cut(s) | 633 |
| XapI | RAATTY | 2 cut(s) | 755, 769 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XmaJI | CCTAGG | 1 cut(s) | 280 |
| XmiI | GTMKAC | 4 cut(s) | 136, 236, 317, 862 |
| XspI | CTAG | 2 cut(s) | 281, 959 |
| ZraI | GACGTC | 1 cut(s) | 315 |