ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 887, 1258 |
| AciI | CCGC | 4 cut(s) | 51, 263, 386, 428 |
| AclWI | GGATC | 1 cut(s) | 1024 |
| AcsI | RAATTY | 2 cut(s) | 590, 643 |
| AcuI | CTGAAG | 1 cut(s) | 240 |
| AdeI | CACNNNGTG | 1 cut(s) | 887 |
| AfaI | GTAC | 6 cut(s) | 495, 760, 1218, 1351, 1357, 1391 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 124, 128, 433, 544, 887, 1258 |
| AgsI | TTSAA | 8 cut(s) | 40, 106, 188, 366, 542, 568, 619, 1084 |
| AhlI | ACTAGT | 1 cut(s) | 1352 |
| AjiI | CACGTC | 1 cut(s) | 998 |
| AjnI | CCWGG | 2 cut(s) | 9, 1323 |
| AluBI | AGCT | 9 cut(s) | 57, 205, 375, 700, 802, 989, 1043, 1052, 1199 |
| AluI | AGCT | 9 cut(s) | 57, 205, 375, 700, 802, 989, 1043, 1052, 1199 |
| Alw26I | GTCTC | 2 cut(s) | 1094, 1301 |
| AlwI | GGATC | 1 cut(s) | 1024 |
| Ama87I | CYCGRG | 1 cut(s) | 1359 |
| AoxI | GGCC | 5 cut(s) | 7, 605, 687, 837, 857 |
| ApeKI | GCWGC | 3 cut(s) | 48, 54, 986 |
| ApoI | RAATTY | 2 cut(s) | 590, 643 |
| AseI | ATTAAT | 2 cut(s) | 519, 1410 |
| AspA2I | CCTAGG | 1 cut(s) | 683 |
| AspS9I | GGNCC | 4 cut(s) | 7, 424, 605, 687 |
| AsuHPI | GGTGA | 2 cut(s) | 998, 1376 |
| AvaI | CYCGRG | 1 cut(s) | 1359 |
| AvaII | GGWCC | 1 cut(s) | 424 |
| AvrII | CCTAGG | 1 cut(s) | 683 |
| AxyI | CCTNAGG | 1 cut(s) | 834 |
| BauI | CACGAG | 1 cut(s) | 480 |
| BbsI | GAAGAC | 4 cut(s) | 81, 144, 854, 1152 |
| BbvI | GCAGC | 3 cut(s) | 60, 66, 998 |
| BccI | CCATC | 4 cut(s) | 643, 777, 1080, 1135 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 272, 306 |
| BciT130I | CCWGG | 2 cut(s) | 11, 1325 |
| BciVI | GTATCC | 1 cut(s) | 78 |
| BcoDI | GTCTC | 2 cut(s) | 1094, 1301 |
| BcuI | ACTAGT | 1 cut(s) | 1352 |
| BfaI | CTAG | 7 cut(s) | 354, 372, 684, 885, 983, 1272, 1353 |
| BfuI | GTATCC | 1 cut(s) | 78 |
| BglII | AGATCT | 1 cut(s) | 440 |
| BisI | GCNGC | 4 cut(s) | 49, 52, 55, 987 |
| BlnI | CCTAGG | 1 cut(s) | 683 |
| BlsI | GCNGC | 4 cut(s) | 50, 53, 56, 988 |
| BmcAI | AGTACT | 1 cut(s) | 1357 |
| Bme1390I | CCNGG | 2 cut(s) | 11, 1325 |
| Bme18I | GGWCC | 1 cut(s) | 424 |
| BmeT110I | CYCGRG | 1 cut(s) | 1359 |
| BmgBI | CACGTC | 1 cut(s) | 998 |
| BmgT120I | GGNCC | 4 cut(s) | 7, 424, 605, 687 |
| BmiI | GGNNCC | 1 cut(s) | 426 |
| BmrFI | CCNGG | 2 cut(s) | 11, 1325 |
| BmsI | GCATC | 2 cut(s) | 154, 803 |
| BpiI | GAAGAC | 4 cut(s) | 81, 144, 854, 1152 |
| BpuEI | CTTGAG | 1 cut(s) | 1153 |
| Bsa29I | ATCGAT | 1 cut(s) | 162 |
| BsaBI | GATNNNNATC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 3 cut(s) | 80, 432, 683 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 257, 287, 292, 322 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 124, 128, 433, 544, 887, 1258 |
| Bse1I | ACTGG | 2 cut(s) | 937, 1041 |
| Bse21I | CCTNAGG | 1 cut(s) | 834 |
| Bse3DI | GCAATG | 1 cut(s) | 679 |
| Bse8I | GATNNNNATC | 1 cut(s) | 65 |
| BseBI | CCWGG | 2 cut(s) | 11, 1325 |
| BseCI | ATCGAT | 1 cut(s) | 162 |
| BseDI | CCNNGG | 3 cut(s) | 80, 432, 683 |
| BseGI | GGATG | 5 cut(s) | 19, 769, 814, 1333, 1396 |
| BseJI | GATNNNNATC | 1 cut(s) | 65 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 124, 128, 433, 544, 887, 1258 |
| BseMI | GCAATG | 1 cut(s) | 679 |
| BseMII | CTCAG | 2 cut(s) | 723, 875 |
| BseNI | ACTGG | 2 cut(s) | 937, 1041 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseXI | GCAGC | 3 cut(s) | 60, 66, 998 |
| BseYI | CCCAGC | 2 cut(s) | 789, 1052 |
| BshFI | GGCC | 5 cut(s) | 9, 607, 689, 839, 859 |
| BshVI | ATCGAT | 1 cut(s) | 162 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1359 |
| BsiSI | CCGG | 1 cut(s) | 1014 |
| BslFI | GGGAC | 3 cut(s) | 410, 984, 1363 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 124, 128, 433, 544, 887, 1258 |
| BsmAI | GTCTC | 2 cut(s) | 1094, 1301 |
| BsmFI | GGGAC | 3 cut(s) | 410, 984, 1363 |
| BsnI | GGCC | 5 cut(s) | 9, 607, 689, 839, 859 |
| BsoBI | CYCGRG | 1 cut(s) | 1359 |
| Bsp143I | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| BspACI | CCGC | 4 cut(s) | 51, 263, 386, 428 |
| BspANI | GGCC | 5 cut(s) | 9, 607, 689, 839, 859 |
| BspCNI | CTCAG | 2 cut(s) | 724, 874 |
| BspDI | ATCGAT | 1 cut(s) | 162 |
| BspLI | GGNNCC | 1 cut(s) | 426 |
| BspPI | GGATC | 1 cut(s) | 1024 |
| BsrDI | GCAATG | 1 cut(s) | 679 |
| BsrI | ACTGG | 2 cut(s) | 937, 1041 |
| BssECI | CCNNGG | 3 cut(s) | 80, 432, 683 |
| BssMI | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| BssSI | CACGAG | 1 cut(s) | 480 |
| BssT1I | CCWWGG | 3 cut(s) | 80, 432, 683 |
| Bst2BI | CACGAG | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 2 cut(s) | 11, 1325 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 336 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 992, 1268 |
| BstC8I | GCNNGC | 1 cut(s) | 787 |
| BstDEI | CTNAG | 6 cut(s) | 248, 461, 732, 834, 861, 867 |
| BstF5I | GGATG | 5 cut(s) | 19, 769, 814, 1333, 1396 |
| BstKTI | GATC | 5 cut(s) | 162, 292, 395, 443, 1019 |
| BstMAI | GTCTC | 2 cut(s) | 1094, 1301 |
| BstMBI | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 54, 791, 992, 1019, 1049, 1063, 1268 |
| BstNI | CCWGG | 2 cut(s) | 11, 1325 |
| BstNSI | RCATGY | 2 cut(s) | 559, 789 |
| BstSCI | CCNGG | 2 cut(s) | 9, 1323 |
| BstV1I | GCAGC | 3 cut(s) | 60, 66, 998 |
| BstV2I | GAAGAC | 4 cut(s) | 81, 144, 854, 1152 |
| BstX2I | RGATCY | 1 cut(s) | 440 |
| BstYI | RGATCY | 1 cut(s) | 440 |
| Bsu15I | ATCGAT | 1 cut(s) | 162 |
| Bsu36I | CCTNAGG | 1 cut(s) | 834 |
| BsuI | GTATCC | 1 cut(s) | 78 |
| BsuRI | GGCC | 5 cut(s) | 9, 607, 689, 839, 859 |
| BsuTUI | ATCGAT | 1 cut(s) | 162 |
| BtrI | CACGTC | 1 cut(s) | 998 |
| BtsCI | GGATG | 5 cut(s) | 19, 769, 814, 1333, 1396 |
| BtsI | GCAGTG | 2 cut(s) | 506, 1022 |
| BtsIMutI | CAGTG | 3 cut(s) | 506, 608, 1022 |
| Cac8I | GCNNGC | 1 cut(s) | 787 |
| Cfr13I | GGNCC | 4 cut(s) | 7, 424, 605, 687 |
| ClaI | ATCGAT | 1 cut(s) | 162 |
| Csp6I | GTAC | 6 cut(s) | 494, 759, 1217, 1350, 1356, 1390 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 597, 632 |
| CviAII | CATG | 4 cut(s) | 556, 709, 786, 1010 |
| CviQI | GTAC | 6 cut(s) | 494, 759, 1217, 1350, 1356, 1390 |
| DdeI | CTNAG | 6 cut(s) | 248, 461, 732, 834, 861, 867 |
| DpnI | GATC | 5 cut(s) | 161, 291, 394, 442, 1018 |
| DpnII | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| DraIII | CACNNNGTG | 1 cut(s) | 887 |
| Eam1104I | CTCTTC | 1 cut(s) | 336 |
| EarI | CTCTTC | 1 cut(s) | 336 |
| Eco130I | CCWWGG | 3 cut(s) | 80, 432, 683 |
| Eco147I | AGGCCT | 1 cut(s) | 859 |
| Eco47I | GGWCC | 1 cut(s) | 424 |
| Eco57I | CTGAAG | 1 cut(s) | 240 |
| Eco81I | CCTNAGG | 1 cut(s) | 834 |
| Eco88I | CYCGRG | 1 cut(s) | 1359 |
| EcoO109I | RGGNCCY | 1 cut(s) | 424 |
| EcoRII | CCWGG | 2 cut(s) | 9, 1323 |
| EcoT14I | CCWWGG | 3 cut(s) | 80, 432, 683 |
| ErhI | CCWWGG | 3 cut(s) | 80, 432, 683 |
| FaeI | CATG | 4 cut(s) | 559, 712, 789, 1013 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 129, 161 |
| FaqI | GGGAC | 3 cut(s) | 410, 984, 1363 |
| FatI | CATG | 4 cut(s) | 555, 708, 785, 1009 |
| FauI | CCCGC | 2 cut(s) | 379, 435 |
| Fnu4HI | GCNGC | 4 cut(s) | 49, 52, 55, 987 |
| FokI | GGATG | 5 cut(s) | 26, 756, 821, 1340, 1383 |
| Fsp4HI | GCNGC | 4 cut(s) | 49, 52, 55, 987 |
| FspBI | CTAG | 7 cut(s) | 354, 372, 684, 885, 983, 1272, 1353 |
| GluI | GCNGC | 4 cut(s) | 49, 52, 55, 987 |
| GsaI | CCCAGC | 2 cut(s) | 793, 1056 |
| HaeIII | GGCC | 5 cut(s) | 9, 607, 689, 839, 859 |
| HapII | CCGG | 1 cut(s) | 1014 |
| Hin1II | CATG | 4 cut(s) | 559, 712, 789, 1013 |
| HincII | GTYRAC | 1 cut(s) | 586 |
| HindII | GTYRAC | 1 cut(s) | 586 |
| HinfI | GANTC | 4 cut(s) | 628, 894, 1309, 1343 |
| HpaII | CCGG | 1 cut(s) | 1014 |
| HphI | GGTGA | 2 cut(s) | 998, 1376 |
| Hpy166II | GTNNAC | 3 cut(s) | 254, 339, 586 |
| Hpy188I | TCNGA | 3 cut(s) | 220, 864, 1156 |
| Hpy188III | TCNNGA | 3 cut(s) | 727, 1132, 1232 |
| Hpy8I | GTNNAC | 3 cut(s) | 254, 339, 586 |
| Hpy99I | CGWCG | 2 cut(s) | 27, 1390 |
| HpyAV | CCTTC | 4 cut(s) | 122, 814, 1361, 1410 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 1117 |
| HpyCH4IV | ACGT | 6 cut(s) | 22, 348, 744, 843, 997, 1388 |
| HpyCH4V | TGCA | 7 cut(s) | 559, 672, 785, 826, 995, 1027, 1112 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 54, 791, 992, 1019, 1049, 1063, 1268 |
| HpyF3I | CTNAG | 6 cut(s) | 248, 461, 732, 834, 861, 867 |
| HpySE526I | ACGT | 6 cut(s) | 22, 348, 744, 843, 997, 1388 |
| Hsp92II | CATG | 4 cut(s) | 559, 712, 789, 1013 |
| Kzo9I | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| LmnI | GCTCC | 2 cut(s) | 202, 697 |
| Lsp1109I | GCAGC | 3 cut(s) | 60, 66, 998 |
| LweI | GCATC | 2 cut(s) | 154, 803 |
| MaeI | CTAG | 7 cut(s) | 354, 372, 684, 885, 983, 1272, 1353 |
| MaeII | ACGT | 6 cut(s) | 22, 348, 744, 843, 997, 1388 |
| MaeIII | GTNAC | 3 cut(s) | 349, 533, 1120 |
| MalI | GATC | 5 cut(s) | 161, 291, 394, 442, 1018 |
| MboI | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| MboII | GAAGA | 7 cut(s) | 86, 149, 323, 859, 1157, 1187, 1197 |
| MflI | RGATCY | 1 cut(s) | 440 |
| MluCI | AATT | 4 cut(s) | 520, 571, 590, 643 |
| MlyI | GAGTC | 2 cut(s) | 888, 1303 |
| MseI | TTAA | 3 cut(s) | 519, 777, 1410 |
| MspA1I | CMGCKG | 1 cut(s) | 51 |
| MspI | CCGG | 1 cut(s) | 1014 |
| MspR9I | CCNGG | 2 cut(s) | 11, 1325 |
| MvaI | CCWGG | 2 cut(s) | 11, 1325 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 54, 791, 992, 1019, 1049, 1063, 1268 |
| NdeII | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| NlaIII | CATG | 4 cut(s) | 559, 712, 789, 1013 |
| NlaIV | GGNNCC | 1 cut(s) | 426 |
| NmuCI | GTSAC | 2 cut(s) | 349, 533 |
| NspI | RCATGY | 2 cut(s) | 559, 789 |
| PaeI | GCATGC | 1 cut(s) | 789 |
| PaeR7I | CTCGAG | 1 cut(s) | 1359 |
| PceI | AGGCCT | 1 cut(s) | 859 |
| PfeI | GAWTC | 2 cut(s) | 628, 1343 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 887, 1258 |
| PfoI | TCCNGGA | 1 cut(s) | 1323 |
| PkrI | GCNGC | 4 cut(s) | 50, 53, 56, 988 |
| PleI | GAGTC | 2 cut(s) | 888, 1303 |
| PpsI | GAGTC | 2 cut(s) | 888, 1303 |
| PpuMI | RGGWCCY | 1 cut(s) | 424 |
| PshBI | ATTAAT | 2 cut(s) | 519, 1410 |
| Psp5II | RGGWCCY | 1 cut(s) | 424 |
| Psp6I | CCWGG | 2 cut(s) | 9, 1323 |
| PspFI | CCCAGC | 2 cut(s) | 789, 1052 |
| PspGI | CCWGG | 2 cut(s) | 9, 1323 |
| PspN4I | GGNNCC | 1 cut(s) | 426 |
| PspPI | GGNCC | 4 cut(s) | 7, 424, 605, 687 |
| PspPPI | RGGWCCY | 1 cut(s) | 424 |
| PspXI | VCTCGAGB | 1 cut(s) | 1359 |
| PsuI | RGATCY | 1 cut(s) | 440 |
| RsaI | GTAC | 6 cut(s) | 495, 760, 1218, 1351, 1357, 1391 |
| RsaNI | GTAC | 6 cut(s) | 494, 759, 1217, 1350, 1356, 1390 |
| SaqAI | TTAA | 3 cut(s) | 519, 777, 1410 |
| SatI | GCNGC | 4 cut(s) | 49, 52, 55, 987 |
| Sau3AI | GATC | 5 cut(s) | 159, 289, 392, 440, 1016 |
| Sau96I | GGNCC | 4 cut(s) | 7, 424, 605, 687 |
| ScaI | AGTACT | 1 cut(s) | 1357 |
| SchI | GAGTC | 2 cut(s) | 888, 1303 |
| ScrFI | CCNGG | 2 cut(s) | 11, 1325 |
| SfaNI | GCATC | 2 cut(s) | 154, 803 |
| Sfr274I | CTCGAG | 1 cut(s) | 1359 |
| SinI | GGWCC | 1 cut(s) | 424 |
| SlaI | CTCGAG | 1 cut(s) | 1359 |
| SmlI | CTYRAG | 2 cut(s) | 1132, 1359 |
| SmoI | CTYRAG | 2 cut(s) | 1132, 1359 |
| SpeI | ACTAGT | 1 cut(s) | 1352 |
| SphI | GCATGC | 1 cut(s) | 789 |
| Sse9I | AATT | 4 cut(s) | 520, 571, 590, 643 |
| SseBI | AGGCCT | 1 cut(s) | 859 |
| SsiI | CCGC | 4 cut(s) | 51, 263, 386, 428 |
| SspI | AATATT | 1 cut(s) | 1417 |
| SspMI | CTAG | 7 cut(s) | 354, 372, 684, 885, 983, 1272, 1353 |
| StuI | AGGCCT | 1 cut(s) | 859 |
| StyD4I | CCNGG | 2 cut(s) | 9, 1323 |
| StyI | CCWWGG | 3 cut(s) | 80, 432, 683 |
| TaaI | ACNGT | 2 cut(s) | 101, 1117 |
| TaiI | ACGT | 6 cut(s) | 25, 351, 747, 846, 1000, 1391 |
| TaqI | TCGA | 7 cut(s) | 25, 59, 162, 377, 391, 1360, 1385 |
| TasI | AATT | 4 cut(s) | 520, 571, 590, 643 |
| TatI | WGTACW | 3 cut(s) | 493, 1349, 1355 |
| TauI | GCSGC | 1 cut(s) | 54 |
| TfiI | GAWTC | 2 cut(s) | 628, 1343 |
| Tru1I | TTAA | 3 cut(s) | 519, 777, 1410 |
| Tru9I | TTAA | 3 cut(s) | 519, 777, 1410 |
| TscAI | CASTG | 3 cut(s) | 513, 615, 1029 |
| TseFI | GTSAC | 2 cut(s) | 349, 533 |
| TseI | GCWGC | 3 cut(s) | 48, 54, 986 |
| Tsp45I | GTSAC | 2 cut(s) | 349, 533 |
| TspDTI | ATGAA | 4 cut(s) | 17, 150, 641, 697 |
| TspGWI | ACGGA | 1 cut(s) | 923 |
| TspRI | CASTG | 3 cut(s) | 513, 615, 1029 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 887, 1258 |
| VpaK11BI | GGWCC | 1 cut(s) | 424 |
| VspI | ATTAAT | 2 cut(s) | 519, 1410 |
| XapI | RAATTY | 2 cut(s) | 590, 643 |
| XceI | RCATGY | 2 cut(s) | 559, 789 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 929 |
| XhoI | CTCGAG | 1 cut(s) | 1359 |
| XmaJI | CCTAGG | 1 cut(s) | 683 |
| XspI | CTAG | 7 cut(s) | 354, 372, 684, 885, 983, 1272, 1353 |
| ZrmI | AGTACT | 1 cut(s) | 1357 |