Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 4 cut(s) | 95, 226, 232, 266 |
| AjnI | CCWGG | 1 cut(s) | 198 |
| Ama87I | CYCGRG | 1 cut(s) | 234 |
| ApeKI | GCWGC | 1 cut(s) | 39 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AvaI | CYCGRG | 1 cut(s) | 234 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BbvI | GCAGC | 1 cut(s) | 26 |
| BccI | CCATC | 2 cut(s) | 88, 107 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 63, 97 |
| BciT130I | CCWGG | 1 cut(s) | 200 |
| BciVI | GTATCC | 1 cut(s) | 196 |
| BfaI | CTAG | 3 cut(s) | 147, 176, 297 |
| BfmI | CTRYAG | 1 cut(s) | 103 |
| BfuI | GTATCC | 1 cut(s) | 196 |
| BisI | GCNGC | 1 cut(s) | 40 |
| BlpI | GCTNAGC | 1 cut(s) | 309 |
| BlsI | GCNGC | 1 cut(s) | 41 |
| BmcAI | AGTACT | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 1 cut(s) | 200 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmeT110I | CYCGRG | 1 cut(s) | 234 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BmiI | GGNNCC | 1 cut(s) | 186 |
| BmrFI | CCNGG | 1 cut(s) | 200 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bse1I | ACTGG | 1 cut(s) | 318 |
| BseBI | CCWGG | 1 cut(s) | 200 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseMII | CTCAG | 2 cut(s) | 11, 300 |
| BseNI | ACTGG | 1 cut(s) | 318 |
| BseXI | GCAGC | 1 cut(s) | 26 |
| BsiHKCI | CYCGRG | 1 cut(s) | 234 |
| BslFI | GGGAC | 1 cut(s) | 238 |
| BsmFI | GGGAC | 1 cut(s) | 238 |
| BsoBI | CYCGRG | 1 cut(s) | 234 |
| Bsp1407I | TGTACA | 2 cut(s) | 224, 264 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 309 |
| BspCNI | CTCAG | 2 cut(s) | 12, 301 |
| BspLI | GGNNCC | 1 cut(s) | 186 |
| BsrGI | TGTACA | 2 cut(s) | 224, 264 |
| BsrI | ACTGG | 1 cut(s) | 318 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 200 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 143 |
| BstAUI | TGTACA | 2 cut(s) | 224, 264 |
| BstC8I | GCNNGC | 1 cut(s) | 72 |
| BstDEI | CTNAG | 3 cut(s) | 20, 160, 309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 143 |
| BstNI | CCWGG | 1 cut(s) | 200 |
| BstSCI | CCNGG | 1 cut(s) | 198 |
| BstSFI | CTRYAG | 1 cut(s) | 103 |
| BstV1I | GCAGC | 1 cut(s) | 26 |
| BsuI | GTATCC | 1 cut(s) | 196 |
| BtgZI | GCGATG | 1 cut(s) | 66 |
| Cac8I | GCNNGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| Csp6I | GTAC | 4 cut(s) | 94, 225, 231, 265 |
| CviJI | RGCY | 5 cut(s) | 39, 175, 185, 308, 313 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 175, 185, 308, 313 |
| CviQI | GTAC | 4 cut(s) | 94, 225, 231, 265 |
| DdeI | CTNAG | 3 cut(s) | 20, 160, 309 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco88I | CYCGRG | 1 cut(s) | 234 |
| EcoO109I | RGGNCCY | 1 cut(s) | 24 |
| EcoRII | CCWGG | 1 cut(s) | 198 |
| FaiI | YATR | 8 cut(s) | 66, 68, 105, 129, 213, 242, 251, 284 |
| FaqI | GGGAC | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 40 |
| Fsp4HI | GCNGC | 1 cut(s) | 40 |
| FspBI | CTAG | 3 cut(s) | 147, 176, 297 |
| GluI | GCNGC | 1 cut(s) | 40 |
| HinfI | GANTC | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 1 cut(s) | 31 |
| HpyAV | CCTTC | 1 cut(s) | 324 |
| HpyCH4V | TGCA | 3 cut(s) | 42, 57, 74 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 143 |
| HpyF3I | CTNAG | 3 cut(s) | 20, 160, 309 |
| LmnI | GCTCC | 1 cut(s) | 190 |
| LpnPI | CCDG | 4 cut(s) | 185, 201, 212, 235 |
| Lsp1109I | GCAGC | 1 cut(s) | 26 |
| MaeI | CTAG | 3 cut(s) | 147, 176, 297 |
| MluCI | AATT | 4 cut(s) | 75, 88, 154, 292 |
| MnlI | CCTC | 8 cut(s) | 15, 25, 37, 43, 175, 208, 230, 268 |
| MseI | TTAA | 1 cut(s) | 87 |
| MspR9I | CCNGG | 1 cut(s) | 200 |
| MvaI | CCWGG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 1 cut(s) | 186 |
| PaeR7I | CTCGAG | 1 cut(s) | 234 |
| PfeI | GAWTC | 1 cut(s) | 218 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| PkrI | GCNGC | 1 cut(s) | 41 |
| PpuMI | RGGWCCY | 1 cut(s) | 24 |
| Psp5II | RGGWCCY | 1 cut(s) | 24 |
| Psp6I | CCWGG | 1 cut(s) | 198 |
| PspGI | CCWGG | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 1 cut(s) | 186 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| PspPPI | RGGWCCY | 1 cut(s) | 24 |
| PspXI | VCTCGAGB | 1 cut(s) | 234 |
| RsaI | GTAC | 4 cut(s) | 95, 226, 232, 266 |
| RsaNI | GTAC | 4 cut(s) | 94, 225, 231, 265 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 1 cut(s) | 40 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| ScaI | AGTACT | 1 cut(s) | 232 |
| ScrFI | CCNGG | 1 cut(s) | 200 |
| SetI | ASST | 5 cut(s) | 29, 36, 144, 241, 247 |
| SfcI | CTRYAG | 1 cut(s) | 103 |
| Sfr274I | CTCGAG | 1 cut(s) | 234 |
| SinI | GGWCC | 1 cut(s) | 24 |
| SlaI | CTCGAG | 1 cut(s) | 234 |
| SmlI | CTYRAG | 1 cut(s) | 234 |
| SmoI | CTYRAG | 1 cut(s) | 234 |
| Sse9I | AATT | 4 cut(s) | 75, 88, 154, 292 |
| SspMI | CTAG | 3 cut(s) | 147, 176, 297 |
| StyD4I | CCNGG | 1 cut(s) | 198 |
| TaqI | TCGA | 1 cut(s) | 235 |
| TasI | AATT | 4 cut(s) | 75, 88, 154, 292 |
| TatI | WGTACW | 4 cut(s) | 93, 224, 230, 264 |
| TfiI | GAWTC | 1 cut(s) | 218 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TseI | GCWGC | 1 cut(s) | 39 |
| TspDTI | ATGAA | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XhoI | CTCGAG | 1 cut(s) | 234 |
| XspI | CTAG | 3 cut(s) | 147, 176, 297 |
| ZrmI | AGTACT | 1 cut(s) | 232 |