Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 567 |
| Acc65I | GGTACC | 1 cut(s) | 555 |
| AccB1I | GGYRCC | 2 cut(s) | 494, 555 |
| AccI | GTMKAC | 1 cut(s) | 218 |
| AccII | CGCG | 1 cut(s) | 175 |
| AciI | CCGC | 4 cut(s) | 173, 207, 547, 552 |
| AclWI | GGATC | 1 cut(s) | 392 |
| AfaI | GTAC | 2 cut(s) | 539, 557 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 108, 504 |
| AgsI | TTSAA | 2 cut(s) | 84, 125 |
| AjnI | CCWGG | 1 cut(s) | 273 |
| AluBI | AGCT | 2 cut(s) | 151, 439 |
| AluI | AGCT | 2 cut(s) | 151, 439 |
| AlwI | GGATC | 1 cut(s) | 392 |
| ApeKI | GCWGC | 3 cut(s) | 8, 194, 549 |
| Asp718I | GGTACC | 1 cut(s) | 555 |
| AsuHPI | GGTGA | 2 cut(s) | 293, 464 |
| BaeGI | GKGCMC | 1 cut(s) | 499 |
| BanI | GGYRCC | 2 cut(s) | 494, 555 |
| BbvI | GCAGC | 2 cut(s) | 181, 561 |
| BccI | CCATC | 1 cut(s) | 460 |
| BciT130I | CCWGG | 1 cut(s) | 275 |
| BfaI | CTAG | 2 cut(s) | 254, 591 |
| BglII | AGATCT | 1 cut(s) | 648 |
| BisI | GCNGC | 3 cut(s) | 9, 195, 550 |
| BlsI | GCNGC | 3 cut(s) | 10, 196, 551 |
| Bme1390I | CCNGG | 1 cut(s) | 275 |
| BmiI | GGNNCC | 3 cut(s) | 321, 496, 557 |
| BmrFI | CCNGG | 1 cut(s) | 275 |
| BpmI | CTGGAG | 1 cut(s) | 336 |
| BsaAI | YACGTR | 1 cut(s) | 491 |
| BsaJI | CCNNGG | 1 cut(s) | 314 |
| BsaWI | WCCGGW | 1 cut(s) | 130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 108, 504 |
| Bse1I | ACTGG | 2 cut(s) | 353, 401 |
| Bse3DI | GCAATG | 1 cut(s) | 323 |
| BseBI | CCWGG | 1 cut(s) | 275 |
| BseDI | CCNNGG | 1 cut(s) | 314 |
| BseGI | GGATG | 2 cut(s) | 313, 540 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 108, 504 |
| BseMI | GCAATG | 1 cut(s) | 323 |
| BseMII | CTCAG | 1 cut(s) | 500 |
| BseNI | ACTGG | 2 cut(s) | 353, 401 |
| BseSI | GKGCMC | 1 cut(s) | 499 |
| BseXI | GCAGC | 2 cut(s) | 181, 561 |
| Bsh1236I | CGCG | 1 cut(s) | 175 |
| BshNI | GGYRCC | 2 cut(s) | 494, 555 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 108, 504 |
| Bsp1286I | GDGCHC | 1 cut(s) | 499 |
| Bsp143I | GATC | 2 cut(s) | 397, 648 |
| Bsp19I | CCATGG | 1 cut(s) | 314 |
| BspACI | CCGC | 4 cut(s) | 173, 207, 547, 552 |
| BspCNI | CTCAG | 1 cut(s) | 501 |
| BspFNI | CGCG | 1 cut(s) | 175 |
| BspLI | GGNNCC | 3 cut(s) | 321, 496, 557 |
| BspPI | GGATC | 1 cut(s) | 392 |
| BspT107I | GGYRCC | 2 cut(s) | 494, 555 |
| BsrDI | GCAATG | 1 cut(s) | 323 |
| BsrI | ACTGG | 2 cut(s) | 353, 401 |
| BssECI | CCNNGG | 1 cut(s) | 314 |
| BssMI | GATC | 2 cut(s) | 397, 648 |
| BssNAI | GTATAC | 1 cut(s) | 219 |
| BssT1I | CCWWGG | 1 cut(s) | 314 |
| Bst1107I | GTATAC | 1 cut(s) | 219 |
| Bst2UI | CCWGG | 1 cut(s) | 275 |
| BstBAI | YACGTR | 1 cut(s) | 491 |
| BstDEI | CTNAG | 1 cut(s) | 509 |
| BstDSI | CCRYGG | 1 cut(s) | 314 |
| BstF5I | GGATG | 2 cut(s) | 313, 540 |
| BstFNI | CGCG | 1 cut(s) | 175 |
| BstKTI | GATC | 2 cut(s) | 400, 651 |
| BstMBI | GATC | 2 cut(s) | 397, 648 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 514 |
| BstNI | CCWGG | 1 cut(s) | 275 |
| BstNSI | RCATGY | 1 cut(s) | 474 |
| BstSCI | CCNGG | 1 cut(s) | 273 |
| BstSLI | GKGCMC | 1 cut(s) | 499 |
| BstUI | CGCG | 1 cut(s) | 175 |
| BstV1I | GCAGC | 2 cut(s) | 181, 561 |
| BstX2I | RGATCY | 1 cut(s) | 648 |
| BstYI | RGATCY | 1 cut(s) | 648 |
| BstZ17I | GTATAC | 1 cut(s) | 219 |
| BtgI | CCRYGG | 1 cut(s) | 314 |
| BtsCI | GGATG | 2 cut(s) | 313, 540 |
| Csp6I | GTAC | 2 cut(s) | 538, 556 |
| CviAII | CATG | 8 cut(s) | 20, 187, 315, 358, 367, 430, 471, 500 |
| CviJI | RGCY | 9 cut(s) | 8, 62, 151, 161, 194, 386, 419, 439, 508 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 62, 151, 161, 194, 386, 419, 439, 508 |
| CviQI | GTAC | 2 cut(s) | 538, 556 |
| DdeI | CTNAG | 1 cut(s) | 509 |
| DpnI | GATC | 2 cut(s) | 399, 650 |
| DpnII | GATC | 2 cut(s) | 397, 648 |
| Eco130I | CCWWGG | 1 cut(s) | 314 |
| EcoRII | CCWGG | 1 cut(s) | 273 |
| EcoT14I | CCWWGG | 1 cut(s) | 314 |
| EcoT22I | ATGCAT | 1 cut(s) | 77 |
| ErhI | CCWWGG | 1 cut(s) | 314 |
| FaeI | CATG | 8 cut(s) | 23, 190, 318, 361, 370, 433, 474, 503 |
| FatI | CATG | 8 cut(s) | 19, 186, 314, 357, 366, 429, 470, 499 |
| FauI | CCCGC | 2 cut(s) | 200, 545 |
| FblI | GTMKAC | 1 cut(s) | 218 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 195, 550 |
| FokI | GGATG | 2 cut(s) | 320, 547 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 195, 550 |
| FspBI | CTAG | 2 cut(s) | 254, 591 |
| GluI | GCNGC | 3 cut(s) | 9, 195, 550 |
| GsuI | CTGGAG | 1 cut(s) | 336 |
| HapII | CCGG | 1 cut(s) | 131 |
| Hin1II | CATG | 8 cut(s) | 23, 190, 318, 361, 370, 433, 474, 503 |
| HindIII | AAGCTT | 1 cut(s) | 149 |
| HinfI | GANTC | 4 cut(s) | 121, 134, 212, 270 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 293, 464 |
| Hpy166II | GTNNAC | 3 cut(s) | 219, 444, 488 |
| Hpy188III | TCNNGA | 1 cut(s) | 609 |
| Hpy8I | GTNNAC | 3 cut(s) | 219, 444, 488 |
| Hpy99I | CGWCG | 2 cut(s) | 607, 610 |
| HpyAV | CCTTC | 1 cut(s) | 606 |
| HpyCH4IV | ACGT | 1 cut(s) | 490 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 75, 197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 514 |
| HpyF3I | CTNAG | 1 cut(s) | 509 |
| HpySE526I | ACGT | 1 cut(s) | 490 |
| Hsp92II | CATG | 8 cut(s) | 23, 190, 318, 361, 370, 433, 474, 503 |
| KpnI | GGTACC | 1 cut(s) | 559 |
| Kzo9I | GATC | 2 cut(s) | 397, 648 |
| LmnI | GCTCC | 1 cut(s) | 436 |
| LpnPI | CCDG | 8 cut(s) | 144, 260, 283, 287, 366, 414, 490, 516 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 561 |
| MaeI | CTAG | 2 cut(s) | 254, 591 |
| MaeII | ACGT | 1 cut(s) | 490 |
| MaeIII | GTNAC | 4 cut(s) | 93, 281, 403, 586 |
| MalI | GATC | 2 cut(s) | 399, 650 |
| MboI | GATC | 2 cut(s) | 397, 648 |
| MboII | GAAGA | 2 cut(s) | 475, 564 |
| MflI | RGATCY | 1 cut(s) | 648 |
| MhlI | GDGCHC | 1 cut(s) | 499 |
| MluCI | AATT | 4 cut(s) | 78, 84, 568, 634 |
| MlyI | GAGTC | 2 cut(s) | 128, 221 |
| MnlI | CCTC | 9 cut(s) | 46, 184, 237, 355, 364, 442, 448, 577, 610 |
| Mph1103I | ATGCAT | 1 cut(s) | 77 |
| MseI | TTAA | 3 cut(s) | 14, 156, 200 |
| MspA1I | CMGCKG | 1 cut(s) | 552 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 275 |
| MvaI | CCWGG | 1 cut(s) | 275 |
| MvnI | CGCG | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 514 |
| NcoI | CCATGG | 1 cut(s) | 314 |
| NdeII | GATC | 2 cut(s) | 397, 648 |
| NlaIII | CATG | 8 cut(s) | 23, 190, 318, 361, 370, 433, 474, 503 |
| NlaIV | GGNNCC | 3 cut(s) | 321, 496, 557 |
| NmuCI | GTSAC | 2 cut(s) | 281, 586 |
| NsiI | ATGCAT | 1 cut(s) | 77 |
| NspI | RCATGY | 1 cut(s) | 474 |
| PfeI | GAWTC | 2 cut(s) | 121, 270 |
| PkrI | GCNGC | 3 cut(s) | 10, 196, 551 |
| PleI | GAGTC | 2 cut(s) | 128, 220 |
| PpsI | GAGTC | 2 cut(s) | 128, 220 |
| Ppu21I | YACGTR | 1 cut(s) | 491 |
| PsiI | TTATAA | 1 cut(s) | 567 |
| Psp6I | CCWGG | 1 cut(s) | 273 |
| PspGI | CCWGG | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 3 cut(s) | 321, 496, 557 |
| PsuI | RGATCY | 1 cut(s) | 648 |
| RsaI | GTAC | 2 cut(s) | 539, 557 |
| RsaNI | GTAC | 2 cut(s) | 538, 556 |
| SaqAI | TTAA | 3 cut(s) | 14, 156, 200 |
| SatI | GCNGC | 3 cut(s) | 9, 195, 550 |
| Sau3AI | GATC | 2 cut(s) | 397, 648 |
| SchI | GAGTC | 2 cut(s) | 128, 221 |
| ScrFI | CCNGG | 1 cut(s) | 275 |
| SduI | GDGCHC | 1 cut(s) | 499 |
| SetI | ASST | 8 cut(s) | 57, 153, 279, 441, 459, 493, 588, 598 |
| Sse9I | AATT | 4 cut(s) | 78, 84, 568, 634 |
| SsiI | CCGC | 4 cut(s) | 173, 207, 547, 552 |
| SspMI | CTAG | 2 cut(s) | 254, 591 |
| StyD4I | CCNGG | 1 cut(s) | 273 |
| StyI | CCWWGG | 1 cut(s) | 314 |
| TaiI | ACGT | 1 cut(s) | 493 |
| TasI | AATT | 4 cut(s) | 78, 84, 568, 634 |
| TatI | WGTACW | 1 cut(s) | 537 |
| TfiI | GAWTC | 2 cut(s) | 121, 270 |
| Tru1I | TTAA | 3 cut(s) | 14, 156, 200 |
| Tru9I | TTAA | 3 cut(s) | 14, 156, 200 |
| TseFI | GTSAC | 2 cut(s) | 281, 586 |
| TseI | GCWGC | 3 cut(s) | 8, 194, 549 |
| Tsp45I | GTSAC | 2 cut(s) | 281, 586 |
| TspDTI | ATGAA | 3 cut(s) | 175, 324, 418 |
| TspGWI | ACGGA | 4 cut(s) | 55, 333, 461, 468 |
| XceI | RCATGY | 1 cut(s) | 474 |
| XmiI | GTMKAC | 1 cut(s) | 218 |
| XspI | CTAG | 2 cut(s) | 254, 591 |
| Zsp2I | ATGCAT | 1 cut(s) | 77 |