Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ELMO_CED12 | PF04727 | 72 - 237 | 2.1e-54 | ELMO/CED-12 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 80 |
| AccII | CGCG | 1 cut(s) | 568 |
| AccIII | TCCGGA | 1 cut(s) | 301 |
| AciI | CCGC | 2 cut(s) | 29, 566 |
| AclWI | GGATC | 4 cut(s) | 112, 359, 372, 459 |
| AcoI | YGGCCR | 2 cut(s) | 58, 121 |
| AcsI | RAATTY | 2 cut(s) | 409, 430 |
| AcuI | CTGAAG | 1 cut(s) | 771 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 196, 723, 730, 785 |
| AgsI | TTSAA | 5 cut(s) | 81, 554, 595, 649, 700 |
| AjnI | CCWGG | 3 cut(s) | 195, 264, 447 |
| AluBI | AGCT | 6 cut(s) | 113, 249, 272, 293, 652, 742 |
| AluI | AGCT | 6 cut(s) | 113, 249, 272, 293, 652, 742 |
| Alw21I | GWGCWC | 2 cut(s) | 148, 264 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| Alw44I | GTGCAC | 1 cut(s) | 144 |
| AlwI | GGATC | 4 cut(s) | 112, 359, 372, 459 |
| Aor13HI | TCCGGA | 1 cut(s) | 301 |
| AoxI | GGCC | 4 cut(s) | 58, 121, 279, 787 |
| ApaLI | GTGCAC | 1 cut(s) | 144 |
| ApeKI | GCWGC | 2 cut(s) | 110, 293 |
| ApoI | RAATTY | 2 cut(s) | 409, 430 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 312, 443 |
| AspS9I | GGNCC | 2 cut(s) | 279, 658 |
| AsuHPI | GGTGA | 1 cut(s) | 485 |
| AsuII | TTCGAA | 1 cut(s) | 460 |
| AvaII | GGWCC | 1 cut(s) | 658 |
| BaeGI | GKGCMC | 1 cut(s) | 148 |
| BamHI | GGATCC | 1 cut(s) | 364 |
| BbsI | GAAGAC | 1 cut(s) | 777 |
| Bbv12I | GWGCWC | 2 cut(s) | 148, 264 |
| BbvCI | CCTCAGC | 1 cut(s) | 90 |
| BbvI | GCAGC | 2 cut(s) | 122, 280 |
| BccI | CCATC | 3 cut(s) | 50, 345, 669 |
| BceAI | ACGGC | 2 cut(s) | 45, 779 |
| BciT130I | CCWGG | 3 cut(s) | 197, 266, 449 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfuAI | ACCTGC | 1 cut(s) | 80 |
| BisI | GCNGC | 2 cut(s) | 111, 294 |
| BlsI | GCNGC | 2 cut(s) | 112, 295 |
| Bme1390I | CCNGG | 3 cut(s) | 197, 266, 449 |
| Bme18I | GGWCC | 1 cut(s) | 658 |
| BmgT120I | GGNCC | 2 cut(s) | 279, 658 |
| BmiI | GGNNCC | 1 cut(s) | 366 |
| BmrFI | CCNGG | 3 cut(s) | 197, 266, 449 |
| BmsI | GCATC | 3 cut(s) | 154, 531, 648 |
| BpiI | GAAGAC | 1 cut(s) | 777 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 151, 183 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| Bpu14I | TTCGAA | 1 cut(s) | 460 |
| BsaI | GGTCTC | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 3 cut(s) | 61, 124, 195 |
| BsaWI | WCCGGW | 1 cut(s) | 301 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 398, 428 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 196, 723, 730, 785 |
| Bse118I | RCCGGY | 1 cut(s) | 723 |
| Bse1I | ACTGG | 1 cut(s) | 579 |
| Bse3DI | GCAATG | 1 cut(s) | 341 |
| BseAI | TCCGGA | 1 cut(s) | 301 |
| BseBI | CCWGG | 3 cut(s) | 197, 266, 449 |
| BseDI | CCNNGG | 3 cut(s) | 61, 124, 195 |
| BseGI | GGATG | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 196, 723, 730, 785 |
| BseMI | GCAATG | 1 cut(s) | 341 |
| BseMII | CTCAG | 2 cut(s) | 81, 321 |
| BseNI | ACTGG | 1 cut(s) | 579 |
| BseRI | GAGGAG | 1 cut(s) | 27 |
| BseSI | GKGCMC | 1 cut(s) | 148 |
| BseXI | GCAGC | 2 cut(s) | 122, 280 |
| Bsh1236I | CGCG | 1 cut(s) | 568 |
| BshFI | GGCC | 4 cut(s) | 60, 123, 281, 789 |
| BsiHKAI | GWGCWC | 2 cut(s) | 148, 264 |
| BsiSI | CCGG | 3 cut(s) | 226, 302, 724 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 196, 723, 730, 785 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmI | GAATGC | 1 cut(s) | 209 |
| BsnI | GGCC | 4 cut(s) | 60, 123, 281, 789 |
| Bso31I | GGTCTC | 1 cut(s) | 56 |
| Bsp119I | TTCGAA | 1 cut(s) | 460 |
| Bsp1286I | GDGCHC | 2 cut(s) | 148, 264 |
| Bsp13I | TCCGGA | 1 cut(s) | 301 |
| Bsp143I | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| BspACI | CCGC | 2 cut(s) | 29, 566 |
| BspANI | GGCC | 4 cut(s) | 60, 123, 281, 789 |
| BspCNI | CTCAG | 2 cut(s) | 82, 322 |
| BspEI | TCCGGA | 1 cut(s) | 301 |
| BspFNI | CGCG | 1 cut(s) | 568 |
| BspLI | GGNNCC | 1 cut(s) | 366 |
| BspMI | ACCTGC | 1 cut(s) | 80 |
| BspPI | GGATC | 4 cut(s) | 112, 359, 372, 459 |
| BspT104I | TTCGAA | 1 cut(s) | 460 |
| BspTNI | GGTCTC | 1 cut(s) | 56 |
| BsrDI | GCAATG | 1 cut(s) | 341 |
| BsrFI | RCCGGY | 1 cut(s) | 723 |
| BsrI | ACTGG | 1 cut(s) | 579 |
| BssAI | RCCGGY | 1 cut(s) | 723 |
| BssECI | CCNNGG | 3 cut(s) | 61, 124, 195 |
| BssMI | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| Bst2UI | CCWGG | 3 cut(s) | 197, 266, 449 |
| Bst4CI | ACNGT | 1 cut(s) | 706 |
| Bst6I | CTCTTC | 1 cut(s) | 148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 72 |
| BstBI | TTCGAA | 1 cut(s) | 460 |
| BstC8I | GCNNGC | 3 cut(s) | 209, 681, 725 |
| BstDEI | CTNAG | 2 cut(s) | 90, 330 |
| BstDSI | CCRYGG | 1 cut(s) | 61 |
| BstF5I | GGATG | 1 cut(s) | 356 |
| BstFNI | CGCG | 1 cut(s) | 568 |
| BstKTI | GATC | 5 cut(s) | 107, 184, 367, 454, 550 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMBI | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 72, 107, 278, 676 |
| BstNI | CCWGG | 3 cut(s) | 197, 266, 449 |
| BstSCI | CCNGG | 3 cut(s) | 195, 264, 447 |
| BstSLI | GKGCMC | 1 cut(s) | 148 |
| BstUI | CGCG | 1 cut(s) | 568 |
| BstV1I | GCAGC | 2 cut(s) | 122, 280 |
| BstV2I | GAAGAC | 1 cut(s) | 777 |
| BstX2I | RGATCY | 2 cut(s) | 364, 451 |
| BstYI | RGATCY | 2 cut(s) | 364, 451 |
| BsuRI | GGCC | 4 cut(s) | 60, 123, 281, 789 |
| BtgI | CCRYGG | 1 cut(s) | 61 |
| BtsCI | GGATG | 1 cut(s) | 356 |
| BtsIMutI | CAGTG | 3 cut(s) | 489, 572, 711 |
| BveI | ACCTGC | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 3 cut(s) | 209, 681, 725 |
| Cfr10I | RCCGGY | 1 cut(s) | 723 |
| Cfr13I | GGNCC | 2 cut(s) | 279, 658 |
| CviAII | CATG | 2 cut(s) | 317, 529 |
| DdeI | CTNAG | 2 cut(s) | 90, 330 |
| DpnI | GATC | 5 cut(s) | 106, 183, 366, 453, 549 |
| DpnII | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| EaeI | YGGCCR | 2 cut(s) | 58, 121 |
| Eam1104I | CTCTTC | 1 cut(s) | 148 |
| EarI | CTCTTC | 1 cut(s) | 148 |
| Eco31I | GGTCTC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 658 |
| Eco57I | CTGAAG | 1 cut(s) | 771 |
| EcoO109I | RGGNCCY | 1 cut(s) | 279 |
| EcoRII | CCWGG | 3 cut(s) | 195, 264, 447 |
| FaeI | CATG | 2 cut(s) | 320, 532 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 297, 329 |
| FatI | CATG | 2 cut(s) | 316, 528 |
| FauNDI | CATATG | 1 cut(s) | 784 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 294 |
| FokI | GGATG | 1 cut(s) | 363 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 294 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GluI | GCNGC | 2 cut(s) | 111, 294 |
| HaeIII | GGCC | 4 cut(s) | 60, 123, 281, 789 |
| HapII | CCGG | 3 cut(s) | 226, 302, 724 |
| Hin1II | CATG | 2 cut(s) | 320, 532 |
| HincII | GTYRAC | 1 cut(s) | 372 |
| HindII | GTYRAC | 1 cut(s) | 372 |
| HindIII | AAGCTT | 1 cut(s) | 270 |
| HinfI | GANTC | 1 cut(s) | 614 |
| HpaII | CCGG | 3 cut(s) | 226, 302, 724 |
| HphI | GGTGA | 1 cut(s) | 485 |
| Hpy166II | GTNNAC | 3 cut(s) | 146, 372, 717 |
| Hpy188I | TCNGA | 2 cut(s) | 540, 751 |
| Hpy188III | TCNNGA | 6 cut(s) | 53, 302, 436, 551, 592, 798 |
| Hpy8I | GTNNAC | 3 cut(s) | 146, 372, 717 |
| HpyAV | CCTTC | 3 cut(s) | 183, 334, 464 |
| HpyCH4III | ACNGT | 1 cut(s) | 706 |
| HpyCH4V | TGCA | 4 cut(s) | 146, 296, 605, 639 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 72, 107, 278, 676 |
| HpyF3I | CTNAG | 2 cut(s) | 90, 330 |
| Hsp92II | CATG | 2 cut(s) | 320, 532 |
| Kpn2I | TCCGGA | 1 cut(s) | 301 |
| KroI | GCCGGC | 1 cut(s) | 723 |
| KroNI | GCCGGC | 1 cut(s) | 725 |
| Kzo9I | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| LmnI | GCTCC | 1 cut(s) | 581 |
| Lsp1109I | GCAGC | 2 cut(s) | 122, 280 |
| LweI | GCATC | 3 cut(s) | 154, 531, 648 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MalI | GATC | 5 cut(s) | 106, 183, 366, 453, 549 |
| MboI | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| MboII | GAAGA | 7 cut(s) | 165, 317, 320, 446, 449, 764, 782 |
| MfeI | CAATTG | 1 cut(s) | 728 |
| MflI | RGATCY | 2 cut(s) | 364, 451 |
| MhlI | GDGCHC | 2 cut(s) | 148, 264 |
| MluCI | AATT | 4 cut(s) | 409, 430, 585, 728 |
| MnlI | CCTC | 8 cut(s) | 5, 8, 30, 85, 119, 193, 270, 790 |
| MroI | TCCGGA | 1 cut(s) | 301 |
| MroNI | GCCGGC | 1 cut(s) | 723 |
| MroXI | GAANNNNTTC | 2 cut(s) | 312, 443 |
| MseI | TTAA | 3 cut(s) | 323, 516, 561 |
| MspI | CCGG | 3 cut(s) | 226, 302, 724 |
| MspR9I | CCNGG | 3 cut(s) | 197, 266, 449 |
| MunI | CAATTG | 1 cut(s) | 728 |
| Mva1269I | GAATGC | 1 cut(s) | 209 |
| MvaI | CCWGG | 3 cut(s) | 197, 266, 449 |
| MvnI | CGCG | 1 cut(s) | 568 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 72, 107, 278, 676 |
| NaeI | GCCGGC | 1 cut(s) | 725 |
| NdeI | CATATG | 1 cut(s) | 784 |
| NdeII | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| NgoMIV | GCCGGC | 1 cut(s) | 723 |
| NlaIII | CATG | 2 cut(s) | 320, 532 |
| NlaIV | GGNNCC | 1 cut(s) | 366 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NspV | TTCGAA | 1 cut(s) | 460 |
| PctI | GAATGC | 1 cut(s) | 209 |
| PdiI | GCCGGC | 1 cut(s) | 725 |
| PdmI | GAANNNNTTC | 2 cut(s) | 312, 443 |
| PfeI | GAWTC | 1 cut(s) | 614 |
| PfoI | TCCNGGA | 1 cut(s) | 447 |
| PkrI | GCNGC | 2 cut(s) | 112, 295 |
| Psp6I | CCWGG | 3 cut(s) | 195, 264, 447 |
| PspGI | CCWGG | 3 cut(s) | 195, 264, 447 |
| PspN4I | GGNNCC | 1 cut(s) | 366 |
| PspPI | GGNCC | 2 cut(s) | 279, 658 |
| PsuI | RGATCY | 2 cut(s) | 364, 451 |
| SaqAI | TTAA | 3 cut(s) | 323, 516, 561 |
| SatI | GCNGC | 2 cut(s) | 111, 294 |
| Sau3AI | GATC | 5 cut(s) | 104, 181, 364, 451, 547 |
| Sau96I | GGNCC | 2 cut(s) | 279, 658 |
| ScrFI | CCNGG | 3 cut(s) | 197, 266, 449 |
| SduI | GDGCHC | 2 cut(s) | 148, 264 |
| SfaNI | GCATC | 3 cut(s) | 154, 531, 648 |
| SfuI | TTCGAA | 1 cut(s) | 460 |
| SinI | GGWCC | 1 cut(s) | 658 |
| Sse9I | AATT | 4 cut(s) | 409, 430, 585, 728 |
| SsiI | CCGC | 2 cut(s) | 29, 566 |
| SspI | AATATT | 1 cut(s) | 520 |
| SspMI | CTAG | 1 cut(s) | 426 |
| StyD4I | CCNGG | 3 cut(s) | 195, 264, 447 |
| TaaI | ACNGT | 1 cut(s) | 706 |
| TaqI | TCGA | 3 cut(s) | 54, 460, 546 |
| TasI | AATT | 4 cut(s) | 409, 430, 585, 728 |
| TfiI | GAWTC | 1 cut(s) | 614 |
| Tru1I | TTAA | 3 cut(s) | 323, 516, 561 |
| Tru9I | TTAA | 3 cut(s) | 323, 516, 561 |
| TscAI | CASTG | 3 cut(s) | 489, 579, 711 |
| TseI | GCWGC | 2 cut(s) | 110, 293 |
| TspDTI | ATGAA | 4 cut(s) | 305, 517, 627, 725 |
| TspGWI | ACGGA | 1 cut(s) | 357 |
| TspRI | CASTG | 3 cut(s) | 489, 579, 711 |
| VneI | GTGCAC | 1 cut(s) | 144 |
| VpaK11BI | GGWCC | 1 cut(s) | 658 |
| XapI | RAATTY | 2 cut(s) | 409, 430 |
| XmnI | GAANNNNTTC | 2 cut(s) | 312, 443 |
| XspI | CTAG | 1 cut(s) | 426 |