Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 256 - 377 | 3.8e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 572 |
| Acc65I | GGTACC | 1 cut(s) | 1022 |
| AccB1I | GGYRCC | 1 cut(s) | 1022 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 746 |
| AccI | GTMKAC | 1 cut(s) | 718 |
| AciI | CCGC | 1 cut(s) | 455 |
| AcsI | RAATTY | 2 cut(s) | 674, 1175 |
| AcuI | CTGAAG | 1 cut(s) | 962 |
| AcyI | GRCGYC | 1 cut(s) | 372 |
| AfaI | GTAC | 6 cut(s) | 289, 415, 538, 867, 1024, 1086 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 382, 746, 847 |
| AflII | CTTAAG | 1 cut(s) | 1195 |
| AgeI | ACCGGT | 1 cut(s) | 1056 |
| AgsI | TTSAA | 3 cut(s) | 437, 919, 1135 |
| AluBI | AGCT | 8 cut(s) | 382, 394, 644, 765, 776, 902, 926, 1155 |
| AluI | AGCT | 8 cut(s) | 382, 394, 644, 765, 776, 902, 926, 1155 |
| Alw26I | GTCTC | 3 cut(s) | 363, 619, 953 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| AoxI | GGCC | 2 cut(s) | 93, 268 |
| ApeKI | GCWGC | 4 cut(s) | 644, 762, 765, 973 |
| ApoI | RAATTY | 2 cut(s) | 674, 1175 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 952, 984 |
| AsiGI | ACCGGT | 1 cut(s) | 1056 |
| Asp718I | GGTACC | 1 cut(s) | 1022 |
| AspS9I | GGNCC | 1 cut(s) | 582 |
| AsuC2I | CCSGG | 1 cut(s) | 65 |
| AsuHPI | GGTGA | 5 cut(s) | 70, 79, 305, 1046, 1051 |
| AvaII | GGWCC | 1 cut(s) | 582 |
| BanI | GGYRCC | 1 cut(s) | 1022 |
| BanII | GRGCYC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 226 |
| BbvCI | CCTCAGC | 1 cut(s) | 451 |
| BbvI | GCAGC | 4 cut(s) | 631, 752, 774, 960 |
| BccI | CCATC | 6 cut(s) | 270, 358, 485, 657, 764, 1034 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BclI | TGATCA | 1 cut(s) | 295 |
| BcnI | CCSGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 3 cut(s) | 363, 619, 953 |
| BfaI | CTAG | 4 cut(s) | 74, 249, 923, 1213 |
| BfmI | CTRYAG | 1 cut(s) | 1138 |
| BfrI | CTTAAG | 1 cut(s) | 1195 |
| BglII | AGATCT | 1 cut(s) | 1006 |
| BisI | GCNGC | 4 cut(s) | 645, 763, 766, 974 |
| BlsI | GCNGC | 4 cut(s) | 646, 764, 767, 975 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| Bme18I | GGWCC | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 1 cut(s) | 582 |
| BmiI | GGNNCC | 3 cut(s) | 103, 314, 1024 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmrI | ACTGGG | 1 cut(s) | 630 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BmuI | ACTGGG | 1 cut(s) | 630 |
| BpiI | GAAGAC | 1 cut(s) | 226 |
| Bpu10I | CCTNAGC | 1 cut(s) | 451 |
| BpuEI | CTTGAG | 2 cut(s) | 249, 679 |
| BpuMI | CCSGG | 1 cut(s) | 65 |
| BsaBI | GATNNNNATC | 2 cut(s) | 462, 1005 |
| BsaHI | GRCGYC | 1 cut(s) | 372 |
| BsaJI | CCNNGG | 5 cut(s) | 54, 63, 700, 740, 1017 |
| BsaWI | WCCGGW | 1 cut(s) | 1056 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 271, 301, 765, 795 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 382, 746, 847 |
| Bse118I | RCCGGY | 1 cut(s) | 1056 |
| Bse1I | ACTGG | 2 cut(s) | 295, 636 |
| Bse3DI | GCAATG | 1 cut(s) | 151 |
| Bse8I | GATNNNNATC | 2 cut(s) | 462, 1005 |
| BseDI | CCNNGG | 5 cut(s) | 54, 63, 700, 740, 1017 |
| BseGI | GGATG | 6 cut(s) | 52, 353, 463, 477, 668, 1192 |
| BseJI | GATNNNNATC | 2 cut(s) | 462, 1005 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 382, 746, 847 |
| BseMI | GCAATG | 1 cut(s) | 151 |
| BseMII | CTCAG | 2 cut(s) | 465, 476 |
| BseNI | ACTGG | 2 cut(s) | 295, 636 |
| BseRI | GAGGAG | 3 cut(s) | 351, 439, 813 |
| BseXI | GCAGC | 4 cut(s) | 631, 752, 774, 960 |
| BsgI | GTGCAG | 1 cut(s) | 864 |
| BshFI | GGCC | 2 cut(s) | 95, 270 |
| BshNI | GGYRCC | 1 cut(s) | 1022 |
| BshTI | ACCGGT | 1 cut(s) | 1056 |
| BsiSI | CCGG | 3 cut(s) | 65, 245, 1057 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 382, 746, 847 |
| BsmAI | GTCTC | 3 cut(s) | 363, 619, 953 |
| BsmBI | CGTCTC | 1 cut(s) | 363 |
| BsnI | GGCC | 2 cut(s) | 95, 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 106 |
| Bsp143I | GATC | 3 cut(s) | 295, 463, 1006 |
| BspACI | CCGC | 1 cut(s) | 455 |
| BspANI | GGCC | 2 cut(s) | 95, 270 |
| BspCNI | CTCAG | 2 cut(s) | 464, 477 |
| BspLI | GGNNCC | 3 cut(s) | 103, 314, 1024 |
| BspT107I | GGYRCC | 1 cut(s) | 1022 |
| BspTI | CTTAAG | 1 cut(s) | 1195 |
| BsrDI | GCAATG | 1 cut(s) | 151 |
| BsrFI | RCCGGY | 1 cut(s) | 1056 |
| BsrI | ACTGG | 2 cut(s) | 295, 636 |
| BssAI | RCCGGY | 1 cut(s) | 1056 |
| BssECI | CCNNGG | 5 cut(s) | 54, 63, 700, 740, 1017 |
| BssMI | GATC | 3 cut(s) | 295, 463, 1006 |
| BssNI | GRCGYC | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 4 cut(s) | 54, 700, 740, 1017 |
| Bst4CI | ACNGT | 2 cut(s) | 541, 712 |
| BstACI | GRCGYC | 1 cut(s) | 372 |
| BstAFI | CTTAAG | 1 cut(s) | 1195 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1127 |
| BstC8I | GCNNGC | 1 cut(s) | 984 |
| BstDEI | CTNAG | 3 cut(s) | 451, 485, 653 |
| BstEII | GGTNACC | 2 cut(s) | 58, 67 |
| BstF5I | GGATG | 6 cut(s) | 52, 353, 463, 477, 668, 1192 |
| BstKTI | GATC | 3 cut(s) | 298, 466, 1009 |
| BstMAI | GTCTC | 3 cut(s) | 363, 619, 953 |
| BstMBI | GATC | 3 cut(s) | 295, 463, 1006 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 87, 101, 150, 979, 1127 |
| BstNSI | RCATGY | 1 cut(s) | 193 |
| BstPI | GGTNACC | 2 cut(s) | 58, 67 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSFI | CTRYAG | 1 cut(s) | 1138 |
| BstV1I | GCAGC | 4 cut(s) | 631, 752, 774, 960 |
| BstV2I | GAAGAC | 1 cut(s) | 226 |
| BstX2I | RGATCY | 1 cut(s) | 1006 |
| BstYI | RGATCY | 1 cut(s) | 1006 |
| BsuRI | GGCC | 2 cut(s) | 95, 270 |
| BtgZI | GCGATG | 1 cut(s) | 783 |
| BtsCI | GGATG | 6 cut(s) | 52, 353, 463, 477, 668, 1192 |
| BtsIMutI | CAGTG | 2 cut(s) | 482, 643 |
| Cac8I | GCNNGC | 1 cut(s) | 984 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| Cfr10I | RCCGGY | 1 cut(s) | 1056 |
| Cfr13I | GGNCC | 1 cut(s) | 582 |
| CseI | GACGC | 1 cut(s) | 380 |
| Csp6I | GTAC | 6 cut(s) | 288, 414, 537, 866, 1023, 1085 |
| CspAI | ACCGGT | 1 cut(s) | 1056 |
| CviAII | CATG | 7 cut(s) | 173, 190, 417, 746, 887, 1082, 1127 |
| CviQI | GTAC | 6 cut(s) | 288, 414, 537, 866, 1023, 1085 |
| DdeI | CTNAG | 3 cut(s) | 451, 485, 653 |
| DpnI | GATC | 3 cut(s) | 297, 465, 1008 |
| DpnII | GATC | 3 cut(s) | 295, 463, 1006 |
| Eco130I | CCWWGG | 4 cut(s) | 54, 700, 740, 1017 |
| Eco147I | AGGCCT | 2 cut(s) | 95, 270 |
| Eco24I | GRGCYC | 1 cut(s) | 106 |
| Eco32I | GATATC | 1 cut(s) | 790 |
| Eco47I | GGWCC | 1 cut(s) | 582 |
| Eco57I | CTGAAG | 1 cut(s) | 962 |
| Eco91I | GGTNACC | 2 cut(s) | 58, 67 |
| EcoO65I | GGTNACC | 2 cut(s) | 58, 67 |
| EcoRI | GAATTC | 1 cut(s) | 674 |
| EcoRV | GATATC | 1 cut(s) | 790 |
| EcoT14I | CCWWGG | 4 cut(s) | 54, 700, 740, 1017 |
| EcoT38I | GRGCYC | 1 cut(s) | 106 |
| ErhI | CCWWGG | 4 cut(s) | 54, 700, 740, 1017 |
| Esp3I | CGTCTC | 1 cut(s) | 363 |
| FaeI | CATG | 7 cut(s) | 176, 193, 420, 749, 890, 1085, 1130 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1035, 1067 |
| FatI | CATG | 7 cut(s) | 172, 189, 416, 745, 886, 1081, 1126 |
| FauNDI | CATATG | 1 cut(s) | 587 |
| FbaI | TGATCA | 1 cut(s) | 295 |
| FblI | GTMKAC | 1 cut(s) | 718 |
| Fnu4HI | GCNGC | 4 cut(s) | 645, 763, 766, 974 |
| FokI | GGATG | 6 cut(s) | 59, 340, 464, 470, 675, 1199 |
| FriOI | GRGCYC | 1 cut(s) | 106 |
| Fsp4HI | GCNGC | 4 cut(s) | 645, 763, 766, 974 |
| FspBI | CTAG | 4 cut(s) | 74, 249, 923, 1213 |
| GluI | GCNGC | 4 cut(s) | 645, 763, 766, 974 |
| HaeIII | GGCC | 2 cut(s) | 95, 270 |
| HapII | CCGG | 3 cut(s) | 65, 245, 1057 |
| HgaI | GACGC | 1 cut(s) | 380 |
| Hin1I | GRCGYC | 1 cut(s) | 372 |
| Hin1II | CATG | 7 cut(s) | 176, 193, 420, 749, 890, 1085, 1130 |
| HincII | GTYRAC | 1 cut(s) | 669 |
| HindII | GTYRAC | 1 cut(s) | 669 |
| HinfI | GANTC | 4 cut(s) | 38, 262, 325, 332 |
| HpaI | GTTAAC | 1 cut(s) | 669 |
| HpaII | CCGG | 3 cut(s) | 65, 245, 1057 |
| HphI | GGTGA | 5 cut(s) | 70, 79, 305, 1046, 1051 |
| Hpy166II | GTNNAC | 2 cut(s) | 669, 719 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 300, 429 |
| Hpy188III | TCNNGA | 3 cut(s) | 329, 821, 1172 |
| Hpy8I | GTNNAC | 2 cut(s) | 669, 719 |
| Hpy99I | CGWCG | 1 cut(s) | 495 |
| HpyCH4III | ACNGT | 2 cut(s) | 541, 712 |
| HpyCH4IV | ACGT | 1 cut(s) | 343 |
| HpyCH4V | TGCA | 7 cut(s) | 144, 389, 560, 762, 845, 937, 1064 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 87, 101, 150, 979, 1127 |
| HpyF3I | CTNAG | 3 cut(s) | 451, 485, 653 |
| HpySE526I | ACGT | 1 cut(s) | 343 |
| Hsp92I | GRCGYC | 1 cut(s) | 372 |
| Hsp92II | CATG | 7 cut(s) | 176, 193, 420, 749, 890, 1085, 1130 |
| KpnI | GGTACC | 1 cut(s) | 1026 |
| Ksp22I | TGATCA | 1 cut(s) | 295 |
| KspAI | GTTAAC | 1 cut(s) | 669 |
| Kzo9I | GATC | 3 cut(s) | 295, 463, 1006 |
| LmnI | GCTCC | 3 cut(s) | 101, 773, 1174 |
| Lsp1109I | GCAGC | 4 cut(s) | 631, 752, 774, 960 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeI | CTAG | 4 cut(s) | 74, 249, 923, 1213 |
| MaeII | ACGT | 1 cut(s) | 343 |
| MaeIII | GTNAC | 6 cut(s) | 58, 67, 541, 781, 871, 1208 |
| MalI | GATC | 3 cut(s) | 297, 465, 1008 |
| MboI | GATC | 3 cut(s) | 295, 463, 1006 |
| MboII | GAAGA | 3 cut(s) | 217, 226, 1043 |
| MfeI | CAATTG | 1 cut(s) | 498 |
| MflI | RGATCY | 1 cut(s) | 1006 |
| MhlI | GDGCHC | 1 cut(s) | 106 |
| MlyI | GAGTC | 2 cut(s) | 32, 256 |
| MseI | TTAA | 3 cut(s) | 23, 668, 1196 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1059 |
| MspA1I | CMGCKG | 2 cut(s) | 455, 765 |
| MspCI | CTTAAG | 1 cut(s) | 1195 |
| MspI | CCGG | 3 cut(s) | 65, 245, 1057 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| MunI | CAATTG | 1 cut(s) | 498 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 87, 101, 150, 979, 1127 |
| NciI | CCSGG | 1 cut(s) | 65 |
| NdeI | CATATG | 1 cut(s) | 587 |
| NdeII | GATC | 3 cut(s) | 295, 463, 1006 |
| NlaIII | CATG | 7 cut(s) | 176, 193, 420, 749, 890, 1085, 1130 |
| NlaIV | GGNNCC | 3 cut(s) | 103, 314, 1024 |
| NmuCI | GTSAC | 5 cut(s) | 58, 67, 541, 781, 1208 |
| NspI | RCATGY | 1 cut(s) | 193 |
| PceI | AGGCCT | 2 cut(s) | 95, 270 |
| PfeI | GAWTC | 2 cut(s) | 325, 332 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 746 |
| PinAI | ACCGGT | 1 cut(s) | 1056 |
| PkrI | GCNGC | 4 cut(s) | 646, 764, 767, 975 |
| PleI | GAGTC | 2 cut(s) | 32, 256 |
| PpsI | GAGTC | 2 cut(s) | 32, 256 |
| PsiI | TTATAA | 1 cut(s) | 572 |
| PspEI | GGTNACC | 2 cut(s) | 58, 67 |
| PspN4I | GGNNCC | 3 cut(s) | 103, 314, 1024 |
| PspPI | GGNCC | 1 cut(s) | 582 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| PsuI | RGATCY | 1 cut(s) | 1006 |
| PvuII | CAGCTG | 1 cut(s) | 765 |
| RsaI | GTAC | 6 cut(s) | 289, 415, 538, 867, 1024, 1086 |
| RsaNI | GTAC | 6 cut(s) | 288, 414, 537, 866, 1023, 1085 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1059 |
| SaqAI | TTAA | 3 cut(s) | 23, 668, 1196 |
| SatI | GCNGC | 4 cut(s) | 645, 763, 766, 974 |
| Sau3AI | GATC | 3 cut(s) | 295, 463, 1006 |
| Sau96I | GGNCC | 1 cut(s) | 582 |
| SchI | GAGTC | 2 cut(s) | 32, 256 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 106 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SfcI | CTRYAG | 1 cut(s) | 1138 |
| SinI | GGWCC | 1 cut(s) | 582 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1059 |
| SmlI | CTYRAG | 3 cut(s) | 264, 694, 1195 |
| SmoI | CTYRAG | 3 cut(s) | 264, 694, 1195 |
| SseBI | AGGCCT | 2 cut(s) | 95, 270 |
| SsiI | CCGC | 1 cut(s) | 455 |
| SspMI | CTAG | 4 cut(s) | 74, 249, 923, 1213 |
| StuI | AGGCCT | 2 cut(s) | 95, 270 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| StyI | CCWWGG | 4 cut(s) | 54, 700, 740, 1017 |
| TaaI | ACNGT | 2 cut(s) | 541, 712 |
| TaiI | ACGT | 1 cut(s) | 346 |
| TaqI | TCGA | 3 cut(s) | 185, 462, 820 |
| TfiI | GAWTC | 2 cut(s) | 325, 332 |
| Tru1I | TTAA | 3 cut(s) | 23, 668, 1196 |
| Tru9I | TTAA | 3 cut(s) | 23, 668, 1196 |
| TscAI | CASTG | 2 cut(s) | 489, 643 |
| TseFI | GTSAC | 5 cut(s) | 58, 67, 541, 781, 1208 |
| TseI | GCWGC | 4 cut(s) | 644, 762, 765, 973 |
| Tsp45I | GTSAC | 5 cut(s) | 58, 67, 541, 781, 1208 |
| TspDTI | ATGAA | 1 cut(s) | 840 |
| TspGWI | ACGGA | 1 cut(s) | 830 |
| TspRI | CASTG | 2 cut(s) | 489, 643 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 746 |
| Vha464I | CTTAAG | 1 cut(s) | 1195 |
| VpaK11BI | GGWCC | 1 cut(s) | 582 |
| XapI | RAATTY | 2 cut(s) | 674, 1175 |
| XceI | RCATGY | 1 cut(s) | 193 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 747 |
| XmiI | GTMKAC | 1 cut(s) | 718 |
| XspI | CTAG | 4 cut(s) | 74, 249, 923, 1213 |