ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 230 |
| AccII | CGCG | 2 cut(s) | 538, 1443 |
| AciI | CCGC | 5 cut(s) | 151, 163, 230, 538, 1441 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 2 cut(s) | 694, 1219 |
| AcuI | CTGAAG | 2 cut(s) | 221, 1074 |
| AcyI | GRCGYC | 1 cut(s) | 1509 |
| AfaI | GTAC | 3 cut(s) | 73, 337, 544 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 332, 1042, 1068, 1153, 1246, 1447 |
| AgeI | ACCGGT | 1 cut(s) | 1475 |
| AgsI | TTSAA | 6 cut(s) | 121, 292, 778, 980, 1078, 1120 |
| AjnI | CCWGG | 2 cut(s) | 309, 1395 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 371, 403 |
| Alw21I | GWGCWC | 3 cut(s) | 815, 992, 1377 |
| Alw26I | GTCTC | 2 cut(s) | 1250, 1538 |
| AoxI | GGCC | 9 cut(s) | 91, 164, 195, 273, 312, 1070, 1350, 1398, 1449 |
| ApeKI | GCWGC | 5 cut(s) | 845, 1004, 1058, 1193, 1196 |
| ApoI | RAATTY | 2 cut(s) | 694, 1219 |
| AsiGI | ACCGGT | 1 cut(s) | 1475 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 503, 521, 1352 |
| AspA2I | CCTAGG | 1 cut(s) | 94 |
| AspLEI | GCGC | 2 cut(s) | 538, 1445 |
| AspS9I | GGNCC | 2 cut(s) | 43, 1033 |
| AsuHPI | GGTGA | 7 cut(s) | 364, 526, 574, 679, 773, 1136, 1465 |
| AvaII | GGWCC | 2 cut(s) | 43, 1033 |
| AvrII | CCTAGG | 1 cut(s) | 94 |
| BanII | GRGCYC | 3 cut(s) | 815, 992, 1377 |
| BauI | CACGAG | 1 cut(s) | 417 |
| Bbv12I | GWGCWC | 3 cut(s) | 815, 992, 1377 |
| BbvI | GCAGC | 5 cut(s) | 857, 991, 1045, 1205, 1208 |
| BccI | CCATC | 4 cut(s) | 719, 874, 1146, 1409 |
| BceAI | ACGGC | 1 cut(s) | 1364 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1244, 1278 |
| BciT130I | CCWGG | 2 cut(s) | 311, 1397 |
| BclI | TGATCA | 1 cut(s) | 493 |
| BcoDI | GTCTC | 2 cut(s) | 1250, 1538 |
| BfaI | CTAG | 2 cut(s) | 95, 1064 |
| BisI | GCNGC | 6 cut(s) | 164, 846, 1005, 1059, 1194, 1197 |
| BlnI | CCTAGG | 1 cut(s) | 94 |
| BlsI | GCNGC | 6 cut(s) | 165, 847, 1006, 1060, 1195, 1198 |
| BmcAI | AGTACT | 1 cut(s) | 544 |
| Bme1390I | CCNGG | 2 cut(s) | 311, 1397 |
| Bme18I | GGWCC | 2 cut(s) | 43, 1033 |
| BmgT120I | GGNCC | 2 cut(s) | 43, 1033 |
| BmiI | GGNNCC | 2 cut(s) | 633, 798 |
| BmrFI | CCNGG | 2 cut(s) | 311, 1397 |
| BmsI | GCATC | 2 cut(s) | 581, 832 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1418, 1450 |
| BpmI | CTGGAG | 1 cut(s) | 776 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1446 |
| BsaHI | GRCGYC | 1 cut(s) | 1509 |
| BsaI | GGTCTC | 1 cut(s) | 1538 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 639, 1147, 1395 |
| BsaWI | WCCGGW | 1 cut(s) | 1475 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 224, 254, 749, 779 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 332, 1042, 1068, 1153, 1246, 1447 |
| Bse118I | RCCGGY | 3 cut(s) | 275, 1475, 1511 |
| Bse1I | ACTGG | 1 cut(s) | 53 |
| Bse3DI | GCAATG | 2 cut(s) | 128, 1134 |
| BseBI | CCWGG | 2 cut(s) | 311, 1397 |
| BseDI | CCNNGG | 4 cut(s) | 94, 639, 1147, 1395 |
| BseGI | GGATG | 4 cut(s) | 205, 730, 1157, 1162 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 332, 1042, 1068, 1153, 1246, 1447 |
| BseMI | GCAATG | 2 cut(s) | 128, 1134 |
| BseMII | CTCAG | 3 cut(s) | 20, 1460, 1533 |
| BseNI | ACTGG | 1 cut(s) | 53 |
| BseRI | GAGGAG | 2 cut(s) | 277, 437 |
| BseXI | GCAGC | 5 cut(s) | 857, 991, 1045, 1205, 1208 |
| BseYI | CCCAGC | 1 cut(s) | 1124 |
| BsgI | GTGCAG | 1 cut(s) | 1203 |
| Bsh1236I | CGCG | 2 cut(s) | 538, 1443 |
| BshFI | GGCC | 9 cut(s) | 93, 166, 197, 275, 314, 1072, 1352, 1400, 1451 |
| BshTI | ACCGGT | 1 cut(s) | 1475 |
| BsiHKAI | GWGCWC | 3 cut(s) | 815, 992, 1377 |
| BsiSI | CCGG | 4 cut(s) | 276, 722, 1476, 1512 |
| BslFI | GGGAC | 2 cut(s) | 386, 1320 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 332, 1042, 1068, 1153, 1246, 1447 |
| BsmAI | GTCTC | 2 cut(s) | 1250, 1538 |
| BsmFI | GGGAC | 2 cut(s) | 386, 1320 |
| BsnI | GGCC | 9 cut(s) | 93, 166, 197, 275, 314, 1072, 1352, 1400, 1451 |
| Bso31I | GGTCTC | 1 cut(s) | 1538 |
| Bsp1286I | GDGCHC | 3 cut(s) | 815, 992, 1377 |
| Bsp143I | GATC | 2 cut(s) | 430, 493 |
| BspACI | CCGC | 5 cut(s) | 151, 163, 230, 538, 1441 |
| BspANI | GGCC | 9 cut(s) | 93, 166, 197, 275, 314, 1072, 1352, 1400, 1451 |
| BspCNI | CTCAG | 3 cut(s) | 19, 1459, 1534 |
| BspFNI | CGCG | 2 cut(s) | 538, 1443 |
| BspLI | GGNNCC | 2 cut(s) | 633, 798 |
| BspQI | GCTCTTC | 1 cut(s) | 512 |
| BspTNI | GGTCTC | 1 cut(s) | 1538 |
| BsrBI | CCGCTC | 1 cut(s) | 230 |
| BsrDI | GCAATG | 2 cut(s) | 128, 1134 |
| BsrFI | RCCGGY | 3 cut(s) | 275, 1475, 1511 |
| BsrI | ACTGG | 1 cut(s) | 53 |
| BssAI | RCCGGY | 3 cut(s) | 275, 1475, 1511 |
| BssECI | CCNNGG | 4 cut(s) | 94, 639, 1147, 1395 |
| BssMI | GATC | 2 cut(s) | 430, 493 |
| BssNI | GRCGYC | 1 cut(s) | 1509 |
| BssSI | CACGAG | 1 cut(s) | 417 |
| BssT1I | CCWWGG | 3 cut(s) | 94, 639, 1147 |
| Bst2BI | CACGAG | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 1397 |
| Bst4CI | ACNGT | 3 cut(s) | 69, 514, 1181 |
| Bst6I | CTCTTC | 2 cut(s) | 326, 512 |
| BstACI | GRCGYC | 1 cut(s) | 1509 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1190, 1202 |
| BstC8I | GCNNGC | 5 cut(s) | 54, 135, 458, 586, 1377 |
| BstDEI | CTNAG | 9 cut(s) | 6, 39, 78, 223, 339, 687, 1215, 1446, 1542 |
| BstEII | GGTNACC | 1 cut(s) | 562 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1244 |
| BstF5I | GGATG | 4 cut(s) | 205, 730, 1157, 1162 |
| BstFNI | CGCG | 2 cut(s) | 538, 1443 |
| BstHHI | GCGC | 2 cut(s) | 538, 1445 |
| BstKTI | GATC | 2 cut(s) | 433, 496 |
| BstMAI | GTCTC | 2 cut(s) | 1250, 1538 |
| BstMBI | GATC | 2 cut(s) | 430, 493 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 139, 148, 706, 1064, 1121, 1190, 1202, 1211, 1440 |
| BstNI | CCWGG | 2 cut(s) | 311, 1397 |
| BstPI | GGTNACC | 1 cut(s) | 562 |
| BstSCI | CCNGG | 2 cut(s) | 309, 1395 |
| BstUI | CGCG | 2 cut(s) | 538, 1443 |
| BstV1I | GCAGC | 5 cut(s) | 857, 991, 1045, 1205, 1208 |
| BsuRI | GGCC | 9 cut(s) | 93, 166, 197, 275, 314, 1072, 1352, 1400, 1451 |
| BtgZI | GCGATG | 1 cut(s) | 1387 |
| BtsCI | GGATG | 4 cut(s) | 205, 730, 1157, 1162 |
| BtsIMutI | CAGTG | 2 cut(s) | 46, 245 |
| Cac8I | GCNNGC | 5 cut(s) | 54, 135, 458, 586, 1377 |
| CfoI | GCGC | 2 cut(s) | 538, 1445 |
| Cfr10I | RCCGGY | 3 cut(s) | 275, 1475, 1511 |
| Cfr13I | GGNCC | 2 cut(s) | 43, 1033 |
| CseI | GACGC | 1 cut(s) | 1517 |
| Csp6I | GTAC | 3 cut(s) | 72, 336, 543 |
| CspAI | ACCGGT | 1 cut(s) | 1475 |
| CviAII | CATG | 5 cut(s) | 57, 258, 770, 1082, 1102 |
| CviQI | GTAC | 3 cut(s) | 72, 336, 543 |
| DdeI | CTNAG | 9 cut(s) | 6, 39, 78, 223, 339, 687, 1215, 1446, 1542 |
| DpnI | GATC | 2 cut(s) | 432, 495 |
| DpnII | GATC | 2 cut(s) | 430, 493 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 2 cut(s) | 326, 512 |
| EarI | CTCTTC | 2 cut(s) | 326, 512 |
| Ecl136II | GAGCTC | 3 cut(s) | 813, 990, 1375 |
| Eco130I | CCWWGG | 3 cut(s) | 94, 639, 1147 |
| Eco147I | AGGCCT | 4 cut(s) | 93, 314, 1072, 1352 |
| Eco24I | GRGCYC | 3 cut(s) | 815, 992, 1377 |
| Eco31I | GGTCTC | 1 cut(s) | 1538 |
| Eco47I | GGWCC | 2 cut(s) | 43, 1033 |
| Eco53kI | GAGCTC | 3 cut(s) | 813, 990, 1375 |
| Eco57I | CTGAAG | 2 cut(s) | 221, 1074 |
| Eco91I | GGTNACC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 3 cut(s) | 813, 990, 1375 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1244 |
| EcoO65I | GGTNACC | 1 cut(s) | 562 |
| EcoRII | CCWGG | 2 cut(s) | 309, 1395 |
| EcoT14I | CCWWGG | 3 cut(s) | 94, 639, 1147 |
| EcoT22I | ATGCAT | 1 cut(s) | 114 |
| EcoT38I | GRGCYC | 3 cut(s) | 815, 992, 1377 |
| ErhI | CCWWGG | 3 cut(s) | 94, 639, 1147 |
| FaeI | CATG | 5 cut(s) | 60, 261, 773, 1085, 1105 |
| FaqI | GGGAC | 2 cut(s) | 386, 1320 |
| FatI | CATG | 5 cut(s) | 56, 257, 769, 1081, 1101 |
| FbaI | TGATCA | 1 cut(s) | 493 |
| Fnu4HI | GCNGC | 6 cut(s) | 164, 846, 1005, 1059, 1194, 1197 |
| FokI | GGATG | 4 cut(s) | 192, 737, 1164, 1169 |
| FriOI | GRGCYC | 3 cut(s) | 815, 992, 1377 |
| Fsp4HI | GCNGC | 6 cut(s) | 164, 846, 1005, 1059, 1194, 1197 |
| FspBI | CTAG | 2 cut(s) | 95, 1064 |
| GlaI | GCGC | 2 cut(s) | 537, 1444 |
| GluI | GCNGC | 6 cut(s) | 164, 846, 1005, 1059, 1194, 1197 |
| GsaI | CCCAGC | 1 cut(s) | 1128 |
| GsuI | CTGGAG | 1 cut(s) | 776 |
| HaeIII | GGCC | 9 cut(s) | 93, 166, 197, 275, 314, 1072, 1352, 1400, 1451 |
| HapII | CCGG | 4 cut(s) | 276, 722, 1476, 1512 |
| HgaI | GACGC | 1 cut(s) | 1517 |
| HhaI | GCGC | 2 cut(s) | 538, 1445 |
| Hin1I | GRCGYC | 1 cut(s) | 1509 |
| Hin1II | CATG | 5 cut(s) | 60, 261, 773, 1085, 1105 |
| Hin6I | GCGC | 2 cut(s) | 536, 1443 |
| HinP1I | GCGC | 2 cut(s) | 536, 1443 |
| HincII | GTYRAC | 2 cut(s) | 1384, 1411 |
| HindII | GTYRAC | 2 cut(s) | 1384, 1411 |
| HindIII | AAGCTT | 2 cut(s) | 454, 1302 |
| HinfI | GANTC | 2 cut(s) | 35, 1258 |
| HpaII | CCGG | 4 cut(s) | 276, 722, 1476, 1512 |
| HphI | GGTGA | 7 cut(s) | 364, 526, 574, 679, 773, 1136, 1465 |
| Hpy166II | GTNNAC | 5 cut(s) | 46, 72, 464, 1384, 1411 |
| Hpy188I | TCNGA | 6 cut(s) | 85, 498, 1228, 1426, 1507, 1543 |
| Hpy188III | TCNNGA | 7 cut(s) | 104, 419, 755, 778, 961, 1274, 1283 |
| Hpy8I | GTNNAC | 5 cut(s) | 46, 72, 464, 1384, 1411 |
| HpyCH4III | ACNGT | 3 cut(s) | 69, 514, 1181 |
| HpyCH4IV | ACGT | 2 cut(s) | 531, 1278 |
| HpyCH4V | TGCA | 7 cut(s) | 112, 845, 1139, 1184, 1193, 1205, 1499 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 139, 148, 706, 1064, 1121, 1190, 1202, 1211, 1440 |
| HpyF3I | CTNAG | 9 cut(s) | 6, 39, 78, 223, 339, 687, 1215, 1446, 1542 |
| HpySE526I | ACGT | 2 cut(s) | 531, 1278 |
| Hsp92I | GRCGYC | 1 cut(s) | 1509 |
| Hsp92II | CATG | 5 cut(s) | 60, 261, 773, 1085, 1105 |
| HspAI | GCGC | 2 cut(s) | 536, 1443 |
| Ksp22I | TGATCA | 1 cut(s) | 493 |
| Kzo9I | GATC | 2 cut(s) | 430, 493 |
| LguI | GCTCTTC | 1 cut(s) | 512 |
| LmnI | GCTCC | 7 cut(s) | 227, 232, 264, 802, 818, 907, 1439 |
| Lsp1109I | GCAGC | 5 cut(s) | 857, 991, 1045, 1205, 1208 |
| LweI | GCATC | 2 cut(s) | 581, 832 |
| MaeI | CTAG | 2 cut(s) | 95, 1064 |
| MaeII | ACGT | 2 cut(s) | 531, 1278 |
| MaeIII | GTNAC | 5 cut(s) | 20, 156, 562, 1175, 1478 |
| MalI | GATC | 2 cut(s) | 432, 495 |
| MbiI | CCGCTC | 1 cut(s) | 230 |
| MboI | GATC | 2 cut(s) | 430, 493 |
| MboII | GAAGA | 7 cut(s) | 304, 313, 529, 570, 825, 1509, 1518 |
| MhlI | GDGCHC | 3 cut(s) | 815, 992, 1377 |
| MluCI | AATT | 6 cut(s) | 363, 694, 781, 1140, 1219, 1500 |
| MlyI | GAGTC | 1 cut(s) | 1252 |
| MmeI | TCCRAC | 5 cut(s) | 63, 369, 707, 996, 1461 |
| Mph1103I | ATGCAT | 1 cut(s) | 114 |
| MroXI | GAANNNNTTC | 3 cut(s) | 503, 521, 1352 |
| MseI | TTAA | 2 cut(s) | 362, 1299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 256 |
| MspA1I | CMGCKG | 2 cut(s) | 163, 1030 |
| MspI | CCGG | 4 cut(s) | 276, 722, 1476, 1512 |
| MspR9I | CCNGG | 2 cut(s) | 311, 1397 |
| MvaI | CCWGG | 2 cut(s) | 311, 1397 |
| MvnI | CGCG | 2 cut(s) | 538, 1443 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 139, 148, 706, 1064, 1121, 1190, 1202, 1211, 1440 |
| NdeII | GATC | 2 cut(s) | 430, 493 |
| NlaIII | CATG | 5 cut(s) | 60, 261, 773, 1085, 1105 |
| NlaIV | GGNNCC | 2 cut(s) | 633, 798 |
| NmuCI | GTSAC | 2 cut(s) | 562, 1175 |
| NsiI | ATGCAT | 1 cut(s) | 114 |
| PceI | AGGCCT | 4 cut(s) | 93, 314, 1072, 1352 |
| PciSI | GCTCTTC | 1 cut(s) | 512 |
| PdmI | GAANNNNTTC | 3 cut(s) | 503, 521, 1352 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PinAI | ACCGGT | 1 cut(s) | 1475 |
| PkrI | GCNGC | 6 cut(s) | 165, 847, 1006, 1060, 1195, 1198 |
| PleI | GAGTC | 1 cut(s) | 1252 |
| PpsI | GAGTC | 1 cut(s) | 1252 |
| Psp124BI | GAGCTC | 3 cut(s) | 815, 992, 1377 |
| Psp6I | CCWGG | 2 cut(s) | 309, 1395 |
| PspEI | GGTNACC | 1 cut(s) | 562 |
| PspFI | CCCAGC | 1 cut(s) | 1124 |
| PspGI | CCWGG | 2 cut(s) | 309, 1395 |
| PspN4I | GGNNCC | 2 cut(s) | 633, 798 |
| PspPI | GGNCC | 2 cut(s) | 43, 1033 |
| PvuII | CAGCTG | 1 cut(s) | 1030 |
| RsaI | GTAC | 3 cut(s) | 73, 337, 544 |
| RsaNI | GTAC | 3 cut(s) | 72, 336, 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 256 |
| SacI | GAGCTC | 3 cut(s) | 815, 992, 1377 |
| SapI | GCTCTTC | 1 cut(s) | 512 |
| SaqAI | TTAA | 2 cut(s) | 362, 1299 |
| SatI | GCNGC | 6 cut(s) | 164, 846, 1005, 1059, 1194, 1197 |
| Sau3AI | GATC | 2 cut(s) | 430, 493 |
| Sau96I | GGNCC | 2 cut(s) | 43, 1033 |
| ScaI | AGTACT | 1 cut(s) | 544 |
| SchI | GAGTC | 1 cut(s) | 1252 |
| ScrFI | CCNGG | 2 cut(s) | 311, 1397 |
| SduI | GDGCHC | 3 cut(s) | 815, 992, 1377 |
| SfaNI | GCATC | 2 cut(s) | 581, 832 |
| SinI | GGWCC | 2 cut(s) | 43, 1033 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 256 |
| Sse9I | AATT | 6 cut(s) | 363, 694, 781, 1140, 1219, 1500 |
| SseBI | AGGCCT | 4 cut(s) | 93, 314, 1072, 1352 |
| SsiI | CCGC | 5 cut(s) | 151, 163, 230, 538, 1441 |
| SspMI | CTAG | 2 cut(s) | 95, 1064 |
| SstI | GAGCTC | 3 cut(s) | 815, 992, 1377 |
| StuI | AGGCCT | 4 cut(s) | 93, 314, 1072, 1352 |
| StyD4I | CCNGG | 2 cut(s) | 309, 1395 |
| StyI | CCWWGG | 3 cut(s) | 94, 639, 1147 |
| TaaI | ACNGT | 3 cut(s) | 69, 514, 1181 |
| TaiI | ACGT | 2 cut(s) | 534, 1281 |
| TaqI | TCGA | 3 cut(s) | 103, 1284, 1342 |
| TasI | AATT | 6 cut(s) | 363, 694, 781, 1140, 1219, 1500 |
| TatI | WGTACW | 1 cut(s) | 542 |
| TauI | GCSGC | 1 cut(s) | 166 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 2 cut(s) | 362, 1299 |
| Tru9I | TTAA | 2 cut(s) | 362, 1299 |
| TscAI | CASTG | 2 cut(s) | 53, 245 |
| TseFI | GTSAC | 2 cut(s) | 562, 1175 |
| TseI | GCWGC | 5 cut(s) | 845, 1004, 1058, 1193, 1196 |
| Tsp45I | GTSAC | 2 cut(s) | 562, 1175 |
| TspDTI | ATGAA | 4 cut(s) | 240, 643, 758, 1345 |
| TspRI | CASTG | 2 cut(s) | 53, 245 |
| VpaK11BI | GGWCC | 2 cut(s) | 43, 1033 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1244 |
| XapI | RAATTY | 2 cut(s) | 694, 1219 |
| XmaJI | CCTAGG | 1 cut(s) | 94 |
| XmnI | GAANNNNTTC | 3 cut(s) | 503, 521, 1352 |
| XspI | CTAG | 2 cut(s) | 95, 1064 |
| ZrmI | AGTACT | 1 cut(s) | 544 |
| Zsp2I | ATGCAT | 1 cut(s) | 114 |