Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 336 |
| Acc16I | TGCGCA | 1 cut(s) | 159 |
| AciI | CCGC | 8 cut(s) | 337, 608, 627, 646, 664, 788, 990, 1002 |
| AclI | AACGTT | 1 cut(s) | 150 |
| AclWI | GGATC | 1 cut(s) | 943 |
| AcoI | YGGCCR | 2 cut(s) | 476, 979 |
| AcvI | CACGTG | 1 cut(s) | 1029 |
| AcyI | GRCGYC | 2 cut(s) | 333, 373 |
| AfaI | GTAC | 5 cut(s) | 36, 126, 258, 264, 872 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 343, 369, 443, 474, 526, 599, 663 |
| AgsI | TTSAA | 3 cut(s) | 7, 122, 326 |
| AhlI | ACTAGT | 2 cut(s) | 259, 565 |
| AluBI | AGCT | 2 cut(s) | 956, 1052 |
| AluI | AGCT | 2 cut(s) | 956, 1052 |
| Alw21I | GWGCWC | 2 cut(s) | 958, 1028 |
| Alw26I | GTCTC | 1 cut(s) | 501 |
| AlwI | GGATC | 1 cut(s) | 943 |
| AoxI | GGCC | 6 cut(s) | 476, 544, 876, 911, 939, 979 |
| ApeKI | GCWGC | 3 cut(s) | 20, 397, 515 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 483, 515, 658, 690 |
| AseI | ATTAAT | 1 cut(s) | 51 |
| AspLEI | GCGC | 3 cut(s) | 107, 160, 605 |
| AspS9I | GGNCC | 7 cut(s) | 316, 434, 522, 529, 732, 911, 940 |
| AsuC2I | CCSGG | 4 cut(s) | 344, 520, 572, 658 |
| AsuHPI | GGTGA | 2 cut(s) | 283, 1022 |
| AvaII | GGWCC | 5 cut(s) | 316, 434, 522, 529, 732 |
| BanII | GRGCYC | 3 cut(s) | 888, 958, 1047 |
| BbrPI | CACGTG | 1 cut(s) | 1029 |
| BbsI | GAAGAC | 1 cut(s) | 545 |
| Bbv12I | GWGCWC | 2 cut(s) | 958, 1028 |
| BbvI | GCAGC | 3 cut(s) | 7, 384, 502 |
| BccI | CCATC | 3 cut(s) | 383, 597, 863 |
| BceAI | ACGGC | 2 cut(s) | 595, 966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 594, 628 |
| BcnI | CCSGG | 4 cut(s) | 344, 520, 572, 658 |
| BcoDI | GTCTC | 1 cut(s) | 501 |
| BcuI | ACTAGT | 2 cut(s) | 259, 565 |
| BfaI | CTAG | 4 cut(s) | 194, 260, 533, 566 |
| BglII | AGATCT | 2 cut(s) | 535, 894 |
| BisI | GCNGC | 4 cut(s) | 21, 398, 516, 991 |
| BlsI | GCNGC | 4 cut(s) | 22, 399, 517, 992 |
| BmcAI | AGTACT | 1 cut(s) | 264 |
| Bme1390I | CCNGG | 4 cut(s) | 344, 520, 572, 658 |
| Bme18I | GGWCC | 5 cut(s) | 316, 434, 522, 529, 732 |
| BmgT120I | GGNCC | 7 cut(s) | 316, 434, 522, 529, 732, 911, 940 |
| BmiI | GGNNCC | 3 cut(s) | 219, 942, 1006 |
| BmrFI | CCNGG | 4 cut(s) | 344, 520, 572, 658 |
| BmsI | GCATC | 2 cut(s) | 225, 565 |
| BpiI | GAAGAC | 1 cut(s) | 545 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 945, 977 |
| BpmI | CTGGAG | 1 cut(s) | 875 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BpuMI | CCSGG | 4 cut(s) | 344, 520, 572, 658 |
| BsaAI | YACGTR | 1 cut(s) | 1029 |
| BsaHI | GRCGYC | 2 cut(s) | 333, 373 |
| BsaI | GGTCTC | 1 cut(s) | 501 |
| BsaJI | CCNNGG | 2 cut(s) | 525, 925 |
| BsaWI | WCCGGW | 4 cut(s) | 443, 460, 734, 1007 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 863, 893 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 343, 369, 443, 474, 526, 599, 663 |
| Bse3DI | GCAATG | 1 cut(s) | 30 |
| BseDI | CCNNGG | 2 cut(s) | 525, 925 |
| BseGI | GGATG | 4 cut(s) | 580, 589, 642, 668 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 343, 369, 443, 474, 526, 599, 663 |
| BseMI | GCAATG | 1 cut(s) | 30 |
| BseRI | GAGGAG | 3 cut(s) | 356, 766, 953 |
| BseX3I | CGGCCG | 2 cut(s) | 476, 979 |
| BseXI | GCAGC | 3 cut(s) | 7, 384, 502 |
| Bsh1285I | CGRYCG | 3 cut(s) | 479, 948, 982 |
| BshFI | GGCC | 6 cut(s) | 478, 546, 878, 913, 941, 981 |
| BsiEI | CGRYCG | 3 cut(s) | 479, 948, 982 |
| BsiHKAI | GWGCWC | 2 cut(s) | 958, 1028 |
| BsiWI | CGTACG | 1 cut(s) | 870 |
| BslFI | GGGAC | 1 cut(s) | 653 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 343, 369, 443, 474, 526, 599, 663 |
| BsmAI | GTCTC | 1 cut(s) | 501 |
| BsmFI | GGGAC | 1 cut(s) | 653 |
| BsnI | GGCC | 6 cut(s) | 478, 546, 878, 913, 941, 981 |
| Bso31I | GGTCTC | 1 cut(s) | 501 |
| Bsp1286I | GDGCHC | 4 cut(s) | 888, 958, 1028, 1047 |
| Bsp143I | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| BspACI | CCGC | 8 cut(s) | 337, 608, 627, 646, 664, 788, 990, 1002 |
| BspANI | GGCC | 6 cut(s) | 478, 546, 878, 913, 941, 981 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BspLI | GGNNCC | 3 cut(s) | 219, 942, 1006 |
| BspPI | GGATC | 1 cut(s) | 943 |
| BspQI | GCTCTTC | 2 cut(s) | 911, 963 |
| BspTNI | GGTCTC | 1 cut(s) | 501 |
| BsrDI | GCAATG | 1 cut(s) | 30 |
| BssECI | CCNNGG | 2 cut(s) | 525, 925 |
| BssMI | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| BssNI | GRCGYC | 2 cut(s) | 333, 373 |
| BssT1I | CCWWGG | 1 cut(s) | 925 |
| Bst4CI | ACNGT | 2 cut(s) | 34, 320 |
| Bst6I | CTCTTC | 6 cut(s) | 118, 321, 679, 911, 963, 990 |
| BstACI | GRCGYC | 2 cut(s) | 333, 373 |
| BstBAI | YACGTR | 1 cut(s) | 1029 |
| BstC8I | GCNNGC | 3 cut(s) | 395, 808, 1024 |
| BstDEI | CTNAG | 2 cut(s) | 41, 917 |
| BstEII | GGTNACC | 1 cut(s) | 463 |
| BstF5I | GGATG | 4 cut(s) | 580, 589, 642, 668 |
| BstHHI | GCGC | 3 cut(s) | 107, 160, 605 |
| BstKTI | GATC | 6 cut(s) | 312, 489, 538, 897, 938, 948 |
| BstMAI | GTCTC | 1 cut(s) | 501 |
| BstMBI | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| BstMCI | CGRYCG | 3 cut(s) | 479, 948, 982 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 17, 390, 602, 910, 987, 999 |
| BstNSI | RCATGY | 1 cut(s) | 582 |
| BstPI | GGTNACC | 1 cut(s) | 463 |
| BstSCI | CCNGG | 4 cut(s) | 342, 518, 570, 656 |
| BstV1I | GCAGC | 3 cut(s) | 7, 384, 502 |
| BstV2I | GAAGAC | 1 cut(s) | 545 |
| BstX2I | RGATCY | 2 cut(s) | 535, 894 |
| BstYI | RGATCY | 2 cut(s) | 535, 894 |
| BstZI | CGGCCG | 2 cut(s) | 476, 979 |
| BsuRI | GGCC | 6 cut(s) | 478, 546, 878, 913, 941, 981 |
| BtsCI | GGATG | 4 cut(s) | 580, 589, 642, 668 |
| BtsI | GCAGTG | 1 cut(s) | 556 |
| BtsIMutI | CAGTG | 1 cut(s) | 556 |
| Cac8I | GCNNGC | 3 cut(s) | 395, 808, 1024 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 3 cut(s) | 107, 160, 605 |
| Cfr13I | GGNCC | 7 cut(s) | 316, 434, 522, 529, 732, 911, 940 |
| CseI | GACGC | 1 cut(s) | 362 |
| Csp6I | GTAC | 5 cut(s) | 35, 125, 257, 263, 871 |
| CviAII | CATG | 2 cut(s) | 140, 579 |
| CviQI | GTAC | 5 cut(s) | 35, 125, 257, 263, 871 |
| DdeI | CTNAG | 2 cut(s) | 41, 917 |
| DpnI | GATC | 6 cut(s) | 311, 488, 537, 896, 937, 947 |
| DpnII | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| EaeI | YGGCCR | 2 cut(s) | 476, 979 |
| EagI | CGGCCG | 2 cut(s) | 476, 979 |
| Eam1104I | CTCTTC | 6 cut(s) | 118, 321, 679, 911, 963, 990 |
| EarI | CTCTTC | 6 cut(s) | 118, 321, 679, 911, 963, 990 |
| Ecl136II | GAGCTC | 1 cut(s) | 956 |
| EclXI | CGGCCG | 2 cut(s) | 476, 979 |
| Eco130I | CCWWGG | 1 cut(s) | 925 |
| Eco147I | AGGCCT | 1 cut(s) | 878 |
| Eco24I | GRGCYC | 3 cut(s) | 888, 958, 1047 |
| Eco31I | GGTCTC | 1 cut(s) | 501 |
| Eco47I | GGWCC | 5 cut(s) | 316, 434, 522, 529, 732 |
| Eco52I | CGGCCG | 2 cut(s) | 476, 979 |
| Eco53kI | GAGCTC | 1 cut(s) | 956 |
| Eco72I | CACGTG | 1 cut(s) | 1029 |
| Eco91I | GGTNACC | 1 cut(s) | 463 |
| EcoICRI | GAGCTC | 1 cut(s) | 956 |
| EcoO65I | GGTNACC | 1 cut(s) | 463 |
| EcoT14I | CCWWGG | 1 cut(s) | 925 |
| EcoT22I | ATGCAT | 1 cut(s) | 580 |
| EcoT38I | GRGCYC | 3 cut(s) | 888, 958, 1047 |
| ErhI | CCWWGG | 1 cut(s) | 925 |
| FaeI | CATG | 2 cut(s) | 143, 582 |
| FaiI | YATR | 6 cut(s) | 99, 101, 141, 162, 245, 580 |
| FaqI | GGGAC | 1 cut(s) | 653 |
| FatI | CATG | 2 cut(s) | 139, 578 |
| FauI | CCCGC | 1 cut(s) | 795 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 398, 516, 991 |
| FokI | GGATG | 4 cut(s) | 576, 587, 629, 655 |
| FriOI | GRGCYC | 3 cut(s) | 888, 958, 1047 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 398, 516, 991 |
| FspBI | CTAG | 4 cut(s) | 194, 260, 533, 566 |
| FspI | TGCGCA | 1 cut(s) | 159 |
| GlaI | GCGC | 3 cut(s) | 106, 159, 604 |
| GluI | GCNGC | 4 cut(s) | 21, 398, 516, 991 |
| GsuI | CTGGAG | 1 cut(s) | 875 |
| HaeIII | GGCC | 6 cut(s) | 478, 546, 878, 913, 941, 981 |
| HgaI | GACGC | 1 cut(s) | 362 |
| HhaI | GCGC | 3 cut(s) | 107, 160, 605 |
| Hin1I | GRCGYC | 2 cut(s) | 333, 373 |
| Hin1II | CATG | 2 cut(s) | 143, 582 |
| Hin6I | GCGC | 3 cut(s) | 105, 158, 603 |
| HinP1I | GCGC | 3 cut(s) | 105, 158, 603 |
| HinfI | GANTC | 5 cut(s) | 250, 277, 455, 921, 1058 |
| HphI | GGTGA | 2 cut(s) | 283, 1022 |
| Hpy166II | GTNNAC | 3 cut(s) | 148, 357, 454 |
| Hpy188I | TCNGA | 9 cut(s) | 234, 434, 491, 529, 616, 883, 950, 1049, 1057 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 194, 377, 754, 892 |
| Hpy8I | GTNNAC | 3 cut(s) | 148, 357, 454 |
| Hpy99I | CGWCG | 3 cut(s) | 378, 616, 971 |
| HpyAV | CCTTC | 4 cut(s) | 374, 557, 851, 1034 |
| HpyCH4III | ACNGT | 2 cut(s) | 34, 320 |
| HpyCH4IV | ACGT | 3 cut(s) | 150, 333, 1028 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 238, 504, 561, 578 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 17, 390, 602, 910, 987, 999 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 917 |
| HpySE526I | ACGT | 3 cut(s) | 150, 333, 1028 |
| Hsp92I | GRCGYC | 2 cut(s) | 333, 373 |
| Hsp92II | CATG | 2 cut(s) | 143, 582 |
| HspAI | GCGC | 3 cut(s) | 105, 158, 603 |
| Kzo9I | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| LguI | GCTCTTC | 2 cut(s) | 911, 963 |
| LmnI | GCTCC | 2 cut(s) | 223, 1049 |
| Lsp1109I | GCAGC | 3 cut(s) | 7, 384, 502 |
| LweI | GCATC | 2 cut(s) | 225, 565 |
| MaeI | CTAG | 4 cut(s) | 194, 260, 533, 566 |
| MaeII | ACGT | 3 cut(s) | 150, 333, 1028 |
| MaeIII | GTNAC | 2 cut(s) | 28, 463 |
| MalI | GATC | 6 cut(s) | 311, 488, 537, 896, 937, 947 |
| MboI | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| MfeI | CAATTG | 1 cut(s) | 305 |
| MflI | RGATCY | 2 cut(s) | 535, 894 |
| MhlI | GDGCHC | 4 cut(s) | 888, 958, 1028, 1047 |
| MluCI | AATT | 3 cut(s) | 202, 284, 305 |
| MlyI | GAGTC | 2 cut(s) | 449, 930 |
| MmeI | TCCRAC | 1 cut(s) | 594 |
| Mph1103I | ATGCAT | 1 cut(s) | 580 |
| MseI | TTAA | 1 cut(s) | 51 |
| MspR9I | CCNGG | 4 cut(s) | 344, 520, 572, 658 |
| MunI | CAATTG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 17, 390, 602, 910, 987, 999 |
| NciI | CCSGG | 4 cut(s) | 344, 520, 572, 658 |
| NdeII | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| NlaIII | CATG | 2 cut(s) | 143, 582 |
| NlaIV | GGNNCC | 3 cut(s) | 219, 942, 1006 |
| NsbI | TGCGCA | 1 cut(s) | 159 |
| NsiI | ATGCAT | 1 cut(s) | 580 |
| NspI | RCATGY | 1 cut(s) | 582 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PceI | AGGCCT | 1 cut(s) | 878 |
| PciSI | GCTCTTC | 2 cut(s) | 911, 963 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 683, 879 |
| PfeI | GAWTC | 3 cut(s) | 250, 277, 1058 |
| Pfl23II | CGTACG | 1 cut(s) | 870 |
| PfoI | TCCNGGA | 1 cut(s) | 570 |
| PkrI | GCNGC | 4 cut(s) | 22, 399, 517, 992 |
| Ple19I | CGATCG | 1 cut(s) | 948 |
| PleI | GAGTC | 2 cut(s) | 449, 929 |
| PmaCI | CACGTG | 1 cut(s) | 1029 |
| PmlI | CACGTG | 1 cut(s) | 1029 |
| PpsI | GAGTC | 2 cut(s) | 449, 929 |
| Ppu21I | YACGTR | 1 cut(s) | 1029 |
| PshBI | ATTAAT | 1 cut(s) | 51 |
| Psp124BI | GAGCTC | 1 cut(s) | 958 |
| Psp1406I | AACGTT | 1 cut(s) | 150 |
| PspCI | CACGTG | 1 cut(s) | 1029 |
| PspEI | GGTNACC | 1 cut(s) | 463 |
| PspLI | CGTACG | 1 cut(s) | 870 |
| PspN4I | GGNNCC | 3 cut(s) | 219, 942, 1006 |
| PspPI | GGNCC | 7 cut(s) | 316, 434, 522, 529, 732, 911, 940 |
| PsuI | RGATCY | 2 cut(s) | 535, 894 |
| PvuI | CGATCG | 1 cut(s) | 948 |
| RsaI | GTAC | 5 cut(s) | 36, 126, 258, 264, 872 |
| RsaNI | GTAC | 5 cut(s) | 35, 125, 257, 263, 871 |
| SacI | GAGCTC | 1 cut(s) | 958 |
| SapI | GCTCTTC | 2 cut(s) | 911, 963 |
| SaqAI | TTAA | 1 cut(s) | 51 |
| SatI | GCNGC | 4 cut(s) | 21, 398, 516, 991 |
| Sau3AI | GATC | 6 cut(s) | 309, 486, 535, 894, 935, 945 |
| Sau96I | GGNCC | 7 cut(s) | 316, 434, 522, 529, 732, 911, 940 |
| ScaI | AGTACT | 1 cut(s) | 264 |
| SchI | GAGTC | 2 cut(s) | 449, 930 |
| ScrFI | CCNGG | 4 cut(s) | 344, 520, 572, 658 |
| SduI | GDGCHC | 4 cut(s) | 888, 958, 1028, 1047 |
| SfaNI | GCATC | 2 cut(s) | 225, 565 |
| SinI | GGWCC | 5 cut(s) | 316, 434, 522, 529, 732 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| SpeI | ACTAGT | 2 cut(s) | 259, 565 |
| Sse9I | AATT | 3 cut(s) | 202, 284, 305 |
| SseBI | AGGCCT | 1 cut(s) | 878 |
| SsiI | CCGC | 8 cut(s) | 337, 608, 627, 646, 664, 788, 990, 1002 |
| SspMI | CTAG | 4 cut(s) | 194, 260, 533, 566 |
| SstI | GAGCTC | 1 cut(s) | 958 |
| StuI | AGGCCT | 1 cut(s) | 878 |
| StyD4I | CCNGG | 4 cut(s) | 342, 518, 570, 656 |
| StyI | CCWWGG | 1 cut(s) | 925 |
| TaaI | ACNGT | 2 cut(s) | 34, 320 |
| TaiI | ACGT | 3 cut(s) | 153, 336, 1031 |
| TaqI | TCGA | 4 cut(s) | 312, 376, 677, 686 |
| TasI | AATT | 3 cut(s) | 202, 284, 305 |
| TatI | WGTACW | 4 cut(s) | 34, 124, 256, 262 |
| TauI | GCSGC | 1 cut(s) | 993 |
| TfiI | GAWTC | 3 cut(s) | 250, 277, 1058 |
| Tru1I | TTAA | 1 cut(s) | 51 |
| Tru9I | TTAA | 1 cut(s) | 51 |
| TscAI | CASTG | 1 cut(s) | 563 |
| TseI | GCWGC | 3 cut(s) | 20, 397, 515 |
| TspDTI | ATGAA | 3 cut(s) | 156, 429, 839 |
| TspGWI | ACGGA | 2 cut(s) | 858, 948 |
| TspRI | CASTG | 1 cut(s) | 563 |
| VpaK11BI | GGWCC | 5 cut(s) | 316, 434, 522, 529, 732 |
| VspI | ATTAAT | 1 cut(s) | 51 |
| XbaI | TCTAGA | 1 cut(s) | 193 |
| XceI | RCATGY | 1 cut(s) | 582 |
| XspI | CTAG | 4 cut(s) | 194, 260, 533, 566 |
| ZraI | GACGTC | 1 cut(s) | 334 |
| ZrmI | AGTACT | 1 cut(s) | 264 |
| Zsp2I | ATGCAT | 1 cut(s) | 580 |