Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 71 - 173 | 3.6e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 10, 120 |
| AclWI | GGATC | 1 cut(s) | 262 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 3 cut(s) | 115, 360, 411 |
| AfeI | AGCGCT | 1 cut(s) | 207 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 173 |
| AgsI | TTSAA | 1 cut(s) | 323 |
| AluBI | AGCT | 2 cut(s) | 278, 407 |
| AluI | AGCT | 2 cut(s) | 278, 407 |
| AlwI | GGATC | 1 cut(s) | 262 |
| Aor51HI | AGCGCT | 1 cut(s) | 207 |
| AoxI | GGCC | 1 cut(s) | 43 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| AseI | ATTAAT | 1 cut(s) | 501 |
| AspLEI | GCGC | 1 cut(s) | 208 |
| AspS9I | GGNCC | 4 cut(s) | 43, 89, 98, 123 |
| AsuHPI | GGTGA | 1 cut(s) | 449 |
| AsuII | TTCGAA | 1 cut(s) | 129 |
| AsuNHI | GCTAGC | 1 cut(s) | 446 |
| AvaII | GGWCC | 3 cut(s) | 89, 98, 123 |
| BbvI | GCAGC | 1 cut(s) | 287 |
| BccI | CCATC | 1 cut(s) | 299 |
| BfaI | CTAG | 4 cut(s) | 258, 272, 447, 513 |
| BfoI | RGCGCY | 1 cut(s) | 209 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| Bme18I | GGWCC | 3 cut(s) | 89, 98, 123 |
| BmgT120I | GGNCC | 4 cut(s) | 43, 89, 98, 123 |
| BmiI | GGNNCC | 1 cut(s) | 124 |
| BmtI | GCTAGC | 1 cut(s) | 450 |
| Bpu14I | TTCGAA | 1 cut(s) | 129 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 173 |
| Bse1I | ACTGG | 3 cut(s) | 91, 241, 471 |
| Bse3DI | GCAATG | 1 cut(s) | 114 |
| BseGI | GGATG | 3 cut(s) | 37, 291, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 173 |
| BseMI | GCAATG | 1 cut(s) | 114 |
| BseNI | ACTGG | 3 cut(s) | 91, 241, 471 |
| BseRI | GAGGAG | 1 cut(s) | 66 |
| BseXI | GCAGC | 1 cut(s) | 287 |
| BshFI | GGCC | 1 cut(s) | 45 |
| BslFI | GGGAC | 1 cut(s) | 247 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 173 |
| BsmFI | GGGAC | 1 cut(s) | 247 |
| BsnI | GGCC | 1 cut(s) | 45 |
| Bsp119I | TTCGAA | 1 cut(s) | 129 |
| Bsp1407I | TGTACA | 1 cut(s) | 409 |
| Bsp143I | GATC | 3 cut(s) | 61, 189, 254 |
| BspACI | CCGC | 2 cut(s) | 10, 120 |
| BspANI | GGCC | 1 cut(s) | 45 |
| BspLI | GGNNCC | 1 cut(s) | 124 |
| BspOI | GCTAGC | 1 cut(s) | 450 |
| BspPI | GGATC | 1 cut(s) | 262 |
| BspT104I | TTCGAA | 1 cut(s) | 129 |
| BsrDI | GCAATG | 1 cut(s) | 114 |
| BsrGI | TGTACA | 1 cut(s) | 409 |
| BsrI | ACTGG | 3 cut(s) | 91, 241, 471 |
| BssMI | GATC | 3 cut(s) | 61, 189, 254 |
| Bst4CI | ACNGT | 1 cut(s) | 369 |
| Bst6I | CTCTTC | 2 cut(s) | 43, 67 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 281 |
| BstAUI | TGTACA | 1 cut(s) | 409 |
| BstBI | TTCGAA | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 2 cut(s) | 168, 448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 171 |
| BstF5I | GGATG | 3 cut(s) | 37, 291, 475 |
| BstH2I | RGCGCY | 1 cut(s) | 209 |
| BstHHI | GCGC | 1 cut(s) | 208 |
| BstKTI | GATC | 3 cut(s) | 64, 192, 257 |
| BstMBI | GATC | 3 cut(s) | 61, 189, 254 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 281 |
| BstV1I | GCAGC | 1 cut(s) | 287 |
| BstX2I | RGATCY | 1 cut(s) | 254 |
| BstYI | RGATCY | 1 cut(s) | 254 |
| BsuRI | GGCC | 1 cut(s) | 45 |
| BtsCI | GGATG | 3 cut(s) | 37, 291, 475 |
| BtsI | GCAGTG | 1 cut(s) | 306 |
| BtsIMutI | CAGTG | 1 cut(s) | 306 |
| Cac8I | GCNNGC | 2 cut(s) | 168, 448 |
| CfoI | GCGC | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 4 cut(s) | 43, 89, 98, 123 |
| Csp6I | GTAC | 3 cut(s) | 114, 359, 410 |
| CviAII | CATG | 3 cut(s) | 227, 299, 328 |
| CviJI | RGCY | 7 cut(s) | 45, 166, 278, 332, 346, 407, 450 |
| CviKI_1 | RGCY | 7 cut(s) | 45, 166, 278, 332, 346, 407, 450 |
| CviQI | GTAC | 3 cut(s) | 114, 359, 410 |
| DpnI | GATC | 3 cut(s) | 63, 191, 256 |
| DpnII | GATC | 3 cut(s) | 61, 189, 254 |
| Eam1104I | CTCTTC | 2 cut(s) | 43, 67 |
| EarI | CTCTTC | 2 cut(s) | 43, 67 |
| EciI | GGCGGA | 1 cut(s) | 25 |
| Eco47I | GGWCC | 3 cut(s) | 89, 98, 123 |
| Eco47III | AGCGCT | 1 cut(s) | 207 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 171 |
| EcoO109I | RGGNCCY | 1 cut(s) | 123 |
| FaeI | CATG | 3 cut(s) | 230, 302, 331 |
| FaiI | YATR | 7 cut(s) | 183, 228, 300, 329, 383, 464, 507 |
| FaqI | GGGAC | 1 cut(s) | 247 |
| FatI | CATG | 3 cut(s) | 226, 298, 327 |
| FauI | CCCGC | 1 cut(s) | 113 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| FokI | GGATG | 3 cut(s) | 44, 278, 482 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| FspBI | CTAG | 4 cut(s) | 258, 272, 447, 513 |
| GlaI | GCGC | 1 cut(s) | 207 |
| GluI | GCNGC | 1 cut(s) | 276 |
| HaeII | RGCGCY | 1 cut(s) | 209 |
| HaeIII | GGCC | 1 cut(s) | 45 |
| HhaI | GCGC | 1 cut(s) | 208 |
| Hin1II | CATG | 3 cut(s) | 230, 302, 331 |
| Hin6I | GCGC | 1 cut(s) | 206 |
| HinP1I | GCGC | 1 cut(s) | 206 |
| HinfI | GANTC | 1 cut(s) | 38 |
| HphI | GGTGA | 1 cut(s) | 449 |
| Hpy166II | GTNNAC | 1 cut(s) | 306 |
| Hpy188I | TCNGA | 1 cut(s) | 28 |
| Hpy188III | TCNNGA | 1 cut(s) | 475 |
| Hpy8I | GTNNAC | 1 cut(s) | 306 |
| HpyAV | CCTTC | 3 cut(s) | 136, 167, 428 |
| HpyCH4III | ACNGT | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 3 cut(s) | 107, 284, 311 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 281 |
| Hsp92II | CATG | 3 cut(s) | 230, 302, 331 |
| HspAI | GCGC | 1 cut(s) | 206 |
| Kzo9I | GATC | 3 cut(s) | 61, 189, 254 |
| LmnI | GCTCC | 1 cut(s) | 213 |
| LpnPI | CCDG | 7 cut(s) | 72, 180, 222, 302, 332, 398, 452 |
| Lsp1109I | GCAGC | 1 cut(s) | 287 |
| MaeI | CTAG | 4 cut(s) | 258, 272, 447, 513 |
| MaeIII | GTNAC | 2 cut(s) | 176, 263 |
| MalI | GATC | 3 cut(s) | 63, 191, 256 |
| MboI | GATC | 3 cut(s) | 61, 189, 254 |
| MboII | GAAGA | 6 cut(s) | 31, 47, 60, 81, 84, 199 |
| MflI | RGATCY | 1 cut(s) | 254 |
| MluCI | AATT | 2 cut(s) | 144, 502 |
| MnlI | CCTC | 8 cut(s) | 22, 44, 224, 226, 245, 334, 349, 461 |
| MseI | TTAA | 2 cut(s) | 387, 501 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 281 |
| NdeII | GATC | 3 cut(s) | 61, 189, 254 |
| NheI | GCTAGC | 1 cut(s) | 446 |
| NlaIII | CATG | 3 cut(s) | 230, 302, 331 |
| NlaIV | GGNNCC | 1 cut(s) | 124 |
| NmuCI | GTSAC | 1 cut(s) | 263 |
| NspV | TTCGAA | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 38 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| PpuMI | RGGWCCY | 1 cut(s) | 123 |
| PshBI | ATTAAT | 1 cut(s) | 501 |
| Psp5II | RGGWCCY | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 1 cut(s) | 124 |
| PspPI | GGNCC | 4 cut(s) | 43, 89, 98, 123 |
| PspPPI | RGGWCCY | 1 cut(s) | 123 |
| PsuI | RGATCY | 1 cut(s) | 254 |
| RsaI | GTAC | 3 cut(s) | 115, 360, 411 |
| RsaNI | GTAC | 3 cut(s) | 114, 359, 410 |
| SaqAI | TTAA | 2 cut(s) | 387, 501 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau3AI | GATC | 3 cut(s) | 61, 189, 254 |
| Sau96I | GGNCC | 4 cut(s) | 43, 89, 98, 123 |
| SetI | ASST | 6 cut(s) | 178, 280, 321, 360, 409, 439 |
| SfuI | TTCGAA | 1 cut(s) | 129 |
| SinI | GGWCC | 3 cut(s) | 89, 98, 123 |
| Sse9I | AATT | 2 cut(s) | 144, 502 |
| SsiI | CCGC | 2 cut(s) | 10, 120 |
| SspMI | CTAG | 4 cut(s) | 258, 272, 447, 513 |
| TaaI | ACNGT | 1 cut(s) | 369 |
| TaqI | TCGA | 3 cut(s) | 129, 137, 250 |
| TasI | AATT | 2 cut(s) | 144, 502 |
| TatI | WGTACW | 1 cut(s) | 409 |
| TfiI | GAWTC | 1 cut(s) | 38 |
| Tru1I | TTAA | 2 cut(s) | 387, 501 |
| Tru9I | TTAA | 2 cut(s) | 387, 501 |
| TscAI | CASTG | 1 cut(s) | 313 |
| TseFI | GTSAC | 1 cut(s) | 263 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 263 |
| TspDTI | ATGAA | 2 cut(s) | 32, 48 |
| TspGWI | ACGGA | 1 cut(s) | 407 |
| TspRI | CASTG | 1 cut(s) | 313 |
| VpaK11BI | GGWCC | 3 cut(s) | 89, 98, 123 |
| VspI | ATTAAT | 1 cut(s) | 501 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 171 |
| XspI | CTAG | 4 cut(s) | 258, 272, 447, 513 |